Wall clock time and date at job start Tue Mar 31 2020 05:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 C 1.46898 * 110.99793 * 123.95156 * 2 1 3 5 5 C 1.53001 * 109.47325 * 66.04880 * 4 2 1 6 6 N 1.46496 * 109.47580 * 180.02562 * 5 4 2 7 7 C 1.46500 * 119.99964 * 270.00103 * 6 5 4 8 8 C 1.34774 * 120.00211 * 89.99942 * 6 5 4 9 9 O 1.21586 * 119.99704 * 359.97438 * 8 6 5 10 10 N 1.34774 * 120.00303 * 180.02562 * 8 6 5 11 11 C 1.46493 * 120.00256 * 180.02562 * 10 8 6 12 12 C 1.53349 * 109.42022 * 275.12556 * 11 10 8 13 13 C 1.53196 * 109.15353 * 178.67345 * 12 11 10 14 14 N 1.46928 * 108.89135 * 54.57497 * 13 12 11 15 15 C 1.36936 * 120.63013 * 126.29699 * 14 13 12 16 16 H 1.07999 * 120.00022 * 331.83633 * 15 14 13 17 17 C 1.38813 * 120.00005 * 151.82709 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.09585 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.09475 * 17 15 14 20 20 H 1.48494 * 109.47083 * 60.00061 * 19 17 15 21 21 H 1.48500 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47024 * 300.00112 * 19 17 15 23 23 C 1.46924 * 118.73859 * 306.32337 * 14 13 12 24 24 C 1.53044 * 109.46300 * 154.99736 * 11 10 8 25 25 H 1.08997 * 109.47645 * 296.04543 * 1 2 3 26 26 H 1.09003 * 109.46988 * 56.04864 * 1 2 3 27 27 H 1.09004 * 109.47160 * 176.04485 * 1 2 3 28 28 H 1.09003 * 109.47055 * 183.94889 * 3 2 1 29 29 H 1.08995 * 109.47561 * 303.95254 * 3 2 1 30 30 H 1.09002 * 109.46848 * 63.95160 * 3 2 1 31 31 H 1.09005 * 109.47488 * 306.05137 * 4 2 1 32 32 H 1.09002 * 109.47307 * 186.04701 * 4 2 1 33 33 H 1.09001 * 109.47032 * 60.00006 * 5 4 2 34 34 H 1.09002 * 109.46781 * 300.00143 * 5 4 2 35 35 H 1.09001 * 109.47168 * 269.99561 * 7 6 5 36 36 H 1.08998 * 109.47154 * 30.00000 * 7 6 5 37 37 H 1.09004 * 109.47347 * 149.99844 * 7 6 5 38 38 H 0.97003 * 119.99662 * 359.97438 * 10 8 6 39 39 H 1.09003 * 109.46113 * 35.02623 * 11 10 8 40 40 H 1.08998 * 109.68701 * 58.70834 * 12 11 10 41 41 H 1.09000 * 109.47234 * 298.50902 * 12 11 10 42 42 H 1.08996 * 109.58345 * 294.72319 * 13 12 11 43 43 H 1.08994 * 109.58644 * 174.43734 * 13 12 11 44 44 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.58664 * 173.39523 * 23 14 13 46 46 H 1.08996 * 109.58580 * 293.67452 * 23 14 13 47 47 H 1.08992 * 109.49619 * 61.43083 * 24 11 10 48 48 H 1.08999 * 109.52313 * 301.35096 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9953 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 7 2.1558 -3.0064 2.1052 7 6 3.5007 -3.5836 2.0408 8 6 1.4009 -3.1781 3.2085 9 8 0.2849 -2.6986 3.2621 10 7 1.8836 -3.8803 4.2527 11 6 1.0629 -4.0674 5.4516 12 6 1.2268 -2.8548 6.3760 13 6 0.3409 -3.0415 7.6118 14 7 0.6657 -4.3294 8.2399 15 6 0.9983 -4.3945 9.5666 16 1 1.4615 -3.5467 10.0494 17 6 0.7400 -5.5500 10.2911 18 7 -0.1048 -6.4446 9.8238 19 14 1.5913 -5.8353 11.9292 20 1 1.2411 -4.7382 12.8667 21 1 1.1481 -7.1335 12.4979 22 1 3.0620 -5.8612 11.7249 23 6 0.6275 -5.5461 7.4172 24 6 1.5103 -5.3350 6.1832 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0253 -0.0709 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9164 -0.8524 30 1 1.7042 1.8723 0.9233 31 1 1.5609 -0.3872 2.0629 32 1 3.0796 -0.6611 1.1757 33 1 2.0658 -2.6214 0.0453 34 1 0.5471 -2.3475 0.9323 35 1 3.4449 -4.5893 1.6243 36 1 4.1328 -2.9621 1.4065 37 1 3.9252 -3.6288 3.0438 38 1 2.7741 -4.2625 4.2100 39 1 0.0161 -4.1647 5.1637 40 1 0.9294 -1.9484 5.8488 41 1 2.2688 -2.7715 6.6847 42 1 -0.7076 -3.0343 7.3141 43 1 0.5254 -2.2331 8.3192 44 1 -0.2850 -7.2522 10.3299 45 1 1.0035 -6.3902 7.9954 46 1 -0.3981 -5.7446 7.1058 47 1 2.5497 -5.2283 6.4934 48 1 1.4157 -6.1926 5.5171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610478711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:44 Heat of formation + Delta-G solvation = 5.774115 kcal Electronic energy + Delta-G solvation = -25191.663967 eV Core-core repulsion = 21703.690796 eV Total energy + Delta-G solvation = -3487.973172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.22269 -38.03348 -37.27011 -35.36304 -34.41249 -32.13687 -30.41959 -29.85373 -29.01864 -27.80815 -26.79975 -25.19838 -24.08101 -22.23325 -21.93939 -21.22782 -19.80528 -19.24710 -17.96545 -16.75606 -16.54960 -15.86036 -15.58722 -15.29934 -14.86378 -14.63844 -14.23356 -14.00769 -13.79245 -13.54948 -13.33918 -13.24089 -12.92499 -12.64942 -12.59597 -12.54002 -12.27701 -12.09854 -11.98617 -11.79566 -11.43359 -11.10361 -11.01194 -10.79297 -10.70862 -10.47770 -10.26297 -10.02233 -9.97015 -9.73286 -9.51947 -8.91319 -8.65792 -8.51308 -8.39325 -6.67054 -5.78583 -3.20739 2.65283 3.34390 3.38663 3.44304 3.45434 3.76654 4.09819 4.50205 4.72056 4.86709 4.89838 4.93481 5.15151 5.22875 5.26769 5.35050 5.37325 5.40976 5.44215 5.45715 5.53606 5.56550 5.61806 5.64828 5.72118 5.86181 5.92388 6.10197 6.30474 6.31338 6.39193 6.53451 6.60095 6.63052 6.72014 6.76044 6.82046 6.91756 7.01020 7.09581 7.33774 7.63298 7.79798 8.09161 8.45836 8.75888 9.21883 9.85133 10.42529 11.30402 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.002818 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.627873 B = 9933.379941 C =10188.345157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.038 3.962 5 C 0.138 3.862 6 N -0.638 5.638 7 C 0.081 3.919 8 C 0.703 3.297 9 O -0.589 6.589 10 N -0.738 5.738 11 C 0.167 3.833 12 C -0.138 4.138 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.175 3.825 24 C -0.146 4.146 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.391 0.609 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.255 0.745 45 H 0.091 0.909 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 8.327 -19.993 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.091 4.091 5 C 0.014 3.986 6 N -0.377 5.377 7 C -0.063 4.063 8 C 0.404 3.596 9 O -0.466 6.466 10 N -0.393 5.393 11 C 0.064 3.936 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.226 0.774 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.881 8.278 -20.264 22.946 hybrid contribution 0.733 0.062 1.545 1.711 sum 7.613 8.340 -18.720 21.862 Atomic orbital electron populations 1.22461 0.87035 1.02735 1.00598 1.61964 1.08414 1.13829 1.42803 1.22372 1.00612 0.88768 1.00588 1.22530 1.00030 0.94523 0.92038 1.21202 1.00732 0.89361 0.87269 1.47017 1.16569 1.57458 1.16652 1.21703 0.83457 0.98664 1.02482 1.15974 0.84137 0.79605 0.79887 1.90906 1.19233 1.54818 1.81677 1.45692 1.19954 1.57327 1.16312 1.20976 0.94923 0.95754 0.81987 1.22436 1.01032 0.96931 0.97483 1.20869 0.95077 0.89691 0.92288 1.44080 1.79657 1.01206 1.06597 1.19149 1.32768 1.00758 0.85535 0.91724 1.25054 0.97710 0.99100 0.97795 1.70016 1.34109 1.11274 1.39392 0.86363 0.79461 0.77185 0.83718 1.20885 1.21636 1.21077 1.20739 0.95210 0.91127 0.88119 1.22532 1.01754 0.94973 0.99296 0.95206 0.91489 0.90876 0.91446 0.91299 0.95575 0.94013 0.90976 0.90046 0.89707 0.92631 0.90957 0.91472 0.77437 0.90109 0.92795 0.92551 0.96183 0.92675 0.93546 0.89060 0.96054 0.92292 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 60.06 0.56 0.75 16 2 N -0.55 -5.23 5.02 -251.26 -1.26 -6.49 16 3 C 0.03 0.20 9.57 60.07 0.57 0.77 16 4 C 0.04 0.40 5.28 -3.82 -0.02 0.38 16 5 C 0.14 1.48 5.33 -4.04 -0.02 1.46 16 6 N -0.64 -7.44 2.87 -187.35 -0.54 -7.98 16 7 C 0.08 0.63 10.20 59.85 0.61 1.24 16 8 C 0.70 11.00 8.24 -86.92 -0.72 10.28 16 9 O -0.59 -11.55 15.58 5.29 0.08 -11.47 16 10 N -0.74 -10.93 4.94 -58.48 -0.29 -11.22 16 11 C 0.17 3.01 2.42 -67.73 -0.16 2.85 16 12 C -0.14 -2.61 5.68 -26.45 -0.15 -2.76 16 13 C 0.15 3.25 6.51 -3.71 -0.02 3.22 16 14 N -0.59 -14.96 2.99 -172.32 -0.52 -15.48 16 15 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -26.17 11.20 55.49 0.62 -25.55 16 19 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 24 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 25 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.07 0.70 6.47 -51.93 -0.34 0.36 16 28 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.08 0.71 8.07 -51.93 -0.42 0.30 16 34 H 0.08 1.07 5.83 -51.93 -0.30 0.77 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.07 0.49 6.36 -51.93 -0.33 0.16 16 38 H 0.39 4.72 6.33 -40.82 -0.26 4.46 16 39 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -32.15 374.15 -9.69 -41.83 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.65 Total: 1.81 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 0.25 Total: 12.33 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -1.98 Total: -66.71 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.15 -9.69 -41.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610478711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.605 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds