Wall clock time and date at job start Tue Mar 31 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 C 1.46898 * 110.99793 * 123.95156 * 2 1 3 5 5 C 1.53001 * 109.47325 * 66.04880 * 4 2 1 6 6 N 1.46496 * 109.47580 * 180.02562 * 5 4 2 7 7 C 1.46500 * 119.99964 * 270.00103 * 6 5 4 8 8 C 1.34774 * 120.00211 * 89.99942 * 6 5 4 9 9 O 1.21586 * 119.99704 * 359.97438 * 8 6 5 10 10 N 1.34774 * 120.00303 * 180.02562 * 8 6 5 11 11 C 1.46493 * 120.00256 * 180.02562 * 10 8 6 12 12 C 1.53349 * 109.42022 * 275.12556 * 11 10 8 13 13 C 1.53196 * 109.15353 * 178.67345 * 12 11 10 14 14 N 1.46928 * 108.89135 * 54.57497 * 13 12 11 15 15 C 1.36936 * 120.63013 * 126.29699 * 14 13 12 16 16 H 1.07999 * 120.00022 * 331.83633 * 15 14 13 17 17 C 1.38813 * 120.00005 * 151.82709 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.09585 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.09475 * 17 15 14 20 20 H 1.48494 * 109.47083 * 60.00061 * 19 17 15 21 21 H 1.48500 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47024 * 300.00112 * 19 17 15 23 23 C 1.46924 * 118.73859 * 306.32337 * 14 13 12 24 24 C 1.53044 * 109.46300 * 154.99736 * 11 10 8 25 25 H 1.08997 * 109.47645 * 296.04543 * 1 2 3 26 26 H 1.09003 * 109.46988 * 56.04864 * 1 2 3 27 27 H 1.09004 * 109.47160 * 176.04485 * 1 2 3 28 28 H 1.09003 * 109.47055 * 183.94889 * 3 2 1 29 29 H 1.08995 * 109.47561 * 303.95254 * 3 2 1 30 30 H 1.09002 * 109.46848 * 63.95160 * 3 2 1 31 31 H 1.09005 * 109.47488 * 306.05137 * 4 2 1 32 32 H 1.09002 * 109.47307 * 186.04701 * 4 2 1 33 33 H 1.09001 * 109.47032 * 60.00006 * 5 4 2 34 34 H 1.09002 * 109.46781 * 300.00143 * 5 4 2 35 35 H 1.09001 * 109.47168 * 269.99561 * 7 6 5 36 36 H 1.08998 * 109.47154 * 30.00000 * 7 6 5 37 37 H 1.09004 * 109.47347 * 149.99844 * 7 6 5 38 38 H 0.97003 * 119.99662 * 359.97438 * 10 8 6 39 39 H 1.09003 * 109.46113 * 35.02623 * 11 10 8 40 40 H 1.08998 * 109.68701 * 58.70834 * 12 11 10 41 41 H 1.09000 * 109.47234 * 298.50902 * 12 11 10 42 42 H 1.08996 * 109.58345 * 294.72319 * 13 12 11 43 43 H 1.08994 * 109.58644 * 174.43734 * 13 12 11 44 44 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.58664 * 173.39523 * 23 14 13 46 46 H 1.08996 * 109.58580 * 293.67452 * 23 14 13 47 47 H 1.08992 * 109.49619 * 61.43083 * 24 11 10 48 48 H 1.08999 * 109.52313 * 301.35096 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9953 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 7 2.1558 -3.0064 2.1052 7 6 3.5007 -3.5836 2.0408 8 6 1.4009 -3.1781 3.2085 9 8 0.2849 -2.6986 3.2621 10 7 1.8836 -3.8803 4.2527 11 6 1.0629 -4.0674 5.4516 12 6 1.2268 -2.8548 6.3760 13 6 0.3409 -3.0415 7.6118 14 7 0.6657 -4.3294 8.2399 15 6 0.9983 -4.3945 9.5666 16 1 1.4615 -3.5467 10.0494 17 6 0.7400 -5.5500 10.2911 18 7 -0.1048 -6.4446 9.8238 19 14 1.5913 -5.8353 11.9292 20 1 1.2411 -4.7382 12.8667 21 1 1.1481 -7.1335 12.4979 22 1 3.0620 -5.8612 11.7249 23 6 0.6275 -5.5461 7.4172 24 6 1.5103 -5.3350 6.1832 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0253 -0.0709 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9164 -0.8524 30 1 1.7042 1.8723 0.9233 31 1 1.5609 -0.3872 2.0629 32 1 3.0796 -0.6611 1.1757 33 1 2.0658 -2.6214 0.0453 34 1 0.5471 -2.3475 0.9323 35 1 3.4449 -4.5893 1.6243 36 1 4.1328 -2.9621 1.4065 37 1 3.9252 -3.6288 3.0438 38 1 2.7741 -4.2625 4.2100 39 1 0.0161 -4.1647 5.1637 40 1 0.9294 -1.9484 5.8488 41 1 2.2688 -2.7715 6.6847 42 1 -0.7076 -3.0343 7.3141 43 1 0.5254 -2.2331 8.3192 44 1 -0.2850 -7.2522 10.3299 45 1 1.0035 -6.3902 7.9954 46 1 -0.3981 -5.7446 7.1058 47 1 2.5497 -5.2283 6.4934 48 1 1.4157 -6.1926 5.5171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610478711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:43 Heat of formation + Delta-G solvation = -16.408385 kcal Electronic energy + Delta-G solvation = -25192.625873 eV Core-core repulsion = 21703.690796 eV Total energy + Delta-G solvation = -3488.935077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41250 -39.33027 -38.44074 -36.41986 -36.01681 -33.91477 -31.92706 -31.40141 -30.32654 -28.52390 -27.63326 -26.89026 -25.21700 -23.92858 -23.48975 -22.18282 -21.20712 -20.68593 -19.22730 -18.50956 -17.69478 -16.97345 -16.72029 -16.39628 -16.31955 -15.79884 -15.54516 -15.36611 -15.21928 -14.88877 -14.79667 -14.47064 -14.11252 -14.05598 -13.92677 -13.36495 -13.25681 -13.19938 -13.00552 -12.84431 -12.63901 -12.56507 -12.53879 -12.50810 -12.23749 -12.04034 -11.89231 -11.82713 -11.56460 -11.39037 -11.17058 -10.55370 -10.14254 -9.57686 -9.39749 -8.71687 -7.88047 -5.34124 1.48923 1.50557 1.58013 1.60958 2.13580 2.52008 2.85838 3.17879 3.28428 3.65295 3.87788 3.91107 4.05014 4.09632 4.23364 4.30940 4.32964 4.42421 4.44751 4.51930 4.59091 4.63260 4.63507 4.72353 4.78009 4.80514 4.85242 4.91576 4.93866 4.98722 4.99989 5.04557 5.05564 5.14545 5.27523 5.45654 5.49741 5.59879 5.63869 5.69828 5.92454 5.97448 6.01065 6.38577 6.99108 7.13980 7.57673 7.83125 8.36665 9.19128 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.002818 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.627873 B = 9933.379941 C =10188.345157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.023 3.977 4 C 0.047 3.953 5 C 0.139 3.861 6 N -0.631 5.631 7 C 0.073 3.927 8 C 0.697 3.303 9 O -0.635 6.635 10 N -0.726 5.726 11 C 0.180 3.820 12 C -0.122 4.122 13 C 0.145 3.855 14 N -0.608 5.608 15 C -0.266 4.266 16 H 0.067 0.933 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.275 1.275 23 C 0.179 3.821 24 C -0.126 4.126 25 H 0.011 0.989 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.016 0.984 31 H 0.007 0.993 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.408 0.592 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.005 0.995 43 H 0.057 0.943 44 H 0.251 0.749 45 H 0.065 0.935 46 H -0.006 1.006 47 H 0.071 0.929 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 8.710 -21.470 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.271 5.271 3 C -0.125 4.125 4 C -0.082 4.082 5 C 0.016 3.984 6 N -0.368 5.368 7 C -0.069 4.069 8 C 0.398 3.602 9 O -0.517 6.517 10 N -0.382 5.382 11 C 0.075 3.925 12 C -0.162 4.162 13 C 0.019 3.981 14 N -0.332 5.332 15 C -0.396 4.396 16 H 0.085 0.915 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.200 1.200 23 C 0.053 3.947 24 C -0.166 4.166 25 H 0.030 0.970 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.246 0.754 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.012 0.988 47 H 0.090 0.910 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.657 8.675 -21.794 25.367 hybrid contribution -0.150 -0.002 1.931 1.937 sum 9.507 8.673 -19.863 23.667 Atomic orbital electron populations 1.22464 0.87223 1.02574 1.00471 1.62025 1.08299 1.14785 1.41943 1.22458 1.01452 0.87815 1.00746 1.22426 1.00679 0.94266 0.90856 1.21271 0.99619 0.89684 0.87845 1.47063 1.17592 1.56804 1.15316 1.22011 0.81370 0.99804 1.03717 1.16163 0.83890 0.79334 0.80784 1.90881 1.21525 1.56583 1.82673 1.45284 1.20303 1.57470 1.15155 1.20551 0.94052 0.95015 0.82900 1.22219 1.00583 0.97375 0.96026 1.20944 0.95001 0.88577 0.93562 1.44336 1.79925 1.02451 1.06491 1.19489 1.32471 1.00958 0.86679 0.91505 1.25837 0.98376 0.98943 1.01301 1.70180 1.35550 1.11610 1.40811 0.85303 0.78613 0.76704 0.79568 1.20340 1.22013 1.20042 1.20568 0.94634 0.89951 0.89583 1.22243 1.00921 0.96142 0.97294 0.97007 0.89627 0.91428 0.90161 0.89893 0.96494 0.97420 0.89301 0.87271 0.92131 0.91106 0.88428 0.90790 0.75377 0.92860 0.92731 0.91566 0.97679 0.92482 0.93956 0.91696 0.98799 0.91042 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.32 127.69 1.19 1.57 16 2 N -0.55 -9.68 5.02 -948.85 -4.76 -14.44 16 3 C 0.02 0.33 9.57 127.69 1.22 1.55 16 4 C 0.05 0.92 5.28 86.30 0.46 1.38 16 5 C 0.14 2.77 5.33 86.38 0.46 3.23 16 6 N -0.63 -13.39 2.87 -864.92 -2.49 -15.87 16 7 C 0.07 0.86 10.20 127.77 1.30 2.16 16 8 C 0.70 21.17 8.24 179.06 1.48 22.65 16 9 O -0.64 -25.38 15.58 -3.99 -0.06 -25.44 16 10 N -0.73 -20.26 4.94 -457.20 -2.26 -22.52 16 11 C 0.18 6.39 2.42 45.12 0.11 6.50 16 12 C -0.12 -4.54 5.68 30.78 0.17 -4.36 16 13 C 0.15 6.50 6.51 86.36 0.56 7.06 16 14 N -0.61 -31.21 2.99 -699.11 -2.09 -33.30 16 15 C -0.27 -14.73 9.58 84.03 0.81 -13.92 16 16 H 0.07 3.60 7.88 -2.91 -0.02 3.57 16 17 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 18 N -0.94 -55.44 11.20 21.65 0.24 -55.20 16 19 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.18 8.65 5.30 86.36 0.46 9.11 16 24 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 25 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 27 H 0.07 1.30 6.47 -2.38 -0.02 1.29 16 28 H 0.08 0.92 8.12 -2.39 -0.02 0.91 16 29 H 0.08 0.93 8.12 -2.39 -0.02 0.91 16 30 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.01 0.20 8.12 -2.38 -0.02 0.18 16 32 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 33 H 0.11 1.58 8.07 -2.39 -0.02 1.56 16 34 H 0.06 1.52 5.83 -2.39 -0.01 1.51 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 0.72 8.07 -2.39 -0.02 0.70 16 37 H 0.07 0.80 6.36 -2.38 -0.02 0.78 16 38 H 0.41 8.60 6.33 -92.71 -0.59 8.01 16 39 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.06 3.48 6.06 -2.39 -0.01 3.47 16 46 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -71.66 374.15 -0.25 -71.91 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.33 Total: 18.06 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 8.80 Total: 30.21 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -11.36 Total: -141.32 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.06 Total: -25.44 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -71.66 -0.25 -71.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610478711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.504 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds