Wall clock time and date at job start Tue Mar 31 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99765 * 2 1 4 4 H 1.48497 * 109.46723 * 269.99820 * 3 2 1 5 5 H 1.48496 * 109.47104 * 29.99811 * 3 2 1 6 6 H 1.48502 * 109.47033 * 150.00317 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00128 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00075 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.34786 * 119.99729 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99586 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99856 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.46945 * 180.02562 * 13 11 10 15 15 C 1.46902 * 110.99673 * 175.43613 * 14 13 11 16 16 H 1.08993 * 109.47761 * 344.67541 * 15 14 13 17 17 C 1.53005 * 109.46591 * 224.67309 * 15 14 13 18 18 C 1.52997 * 109.47064 * 66.27761 * 17 15 14 19 19 O 1.42900 * 109.47201 * 184.48340 * 18 17 15 20 20 C 1.53001 * 109.46968 * 104.67911 * 15 14 13 21 21 C 1.52999 * 109.47054 * 294.47525 * 20 15 14 22 22 C 1.52994 * 109.47389 * 180.02562 * 21 20 15 23 23 C 1.53006 * 109.47165 * 300.00167 * 22 21 20 24 24 C 1.53003 * 109.46933 * 59.99975 * 23 22 21 25 25 C 1.52997 * 109.47489 * 54.48160 * 20 15 14 26 26 H 0.97005 * 120.00175 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46855 * 60.00852 * 9 7 2 28 28 H 1.08997 * 109.47459 * 300.00647 * 9 7 2 29 29 H 0.97001 * 120.00457 * 0.02562 * 10 9 7 30 30 H 1.08999 * 109.47674 * 59.99586 * 13 11 10 31 31 H 1.09006 * 109.46854 * 299.99850 * 13 11 10 32 32 H 1.00895 * 111.00049 * 51.47842 * 14 13 11 33 33 H 1.09008 * 109.46606 * 186.27489 * 17 15 14 34 34 H 1.08996 * 109.47310 * 306.27041 * 17 15 14 35 35 H 1.09000 * 109.47378 * 304.49349 * 18 17 15 36 36 H 1.09010 * 109.46973 * 64.49047 * 18 17 15 37 37 H 0.96702 * 113.99720 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.46659 * 174.48163 * 20 15 14 39 39 H 1.09003 * 109.46716 * 60.00230 * 21 20 15 40 40 H 1.09003 * 109.47477 * 300.00641 * 21 20 15 41 41 H 1.09003 * 109.47282 * 60.00236 * 22 21 20 42 42 H 1.08998 * 109.47356 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47222 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47097 * 300.00227 * 23 22 21 45 45 H 1.08996 * 109.46949 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.47210 * 59.99675 * 24 23 22 47 47 H 1.09002 * 109.46429 * 299.99712 * 25 20 15 48 48 H 1.08998 * 109.47269 * 59.99807 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3250 -2.8215 0.0001 12 8 6.1131 -1.8995 0.0006 13 6 5.8273 -4.2422 -0.0003 14 7 7.2964 -4.2422 0.0005 15 6 7.8227 -5.6094 0.1092 16 1 7.0276 -6.2801 0.4344 17 6 8.9626 -5.6372 1.1294 18 6 8.4075 -5.3349 2.5227 19 8 9.4849 -5.2577 3.4583 20 6 8.3475 -6.0637 -1.2543 21 6 7.1822 -6.1679 -2.2403 22 6 7.7067 -6.6229 -3.6036 23 6 8.7252 -5.6062 -4.1234 24 6 9.8905 -5.5021 -3.1374 25 6 9.3657 -5.0467 -1.7737 26 1 -0.4851 0.8401 0.0004 27 1 3.8752 -0.6796 0.8896 28 1 3.8746 -0.6806 -0.8904 29 1 3.3696 -3.3125 0.0001 30 1 5.4641 -4.7558 -0.8905 31 1 5.4639 -4.7564 0.8895 32 1 7.6575 -3.6559 0.7379 33 1 9.4263 -6.6238 1.1292 34 1 9.7065 -4.8862 0.8637 35 1 7.8744 -4.3843 2.5031 36 1 7.7232 -6.1291 2.8214 37 1 9.2060 -5.0678 4.3645 38 1 8.8260 -7.0378 -1.1532 39 1 6.7036 -5.1938 -2.3414 40 1 6.4567 -6.8925 -1.8703 41 1 8.1851 -7.5971 -3.5023 42 1 6.8766 -6.6967 -4.3062 43 1 9.0993 -5.9306 -5.0944 44 1 8.2469 -4.6321 -4.2247 45 1 10.6163 -4.7782 -3.5079 46 1 10.3689 -6.4763 -3.0359 47 1 8.8870 -4.0727 -1.8748 48 1 10.1958 -4.9725 -1.0713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725111657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:44 Heat of formation + Delta-G solvation = -118.461656 kcal Electronic energy + Delta-G solvation = -25066.069705 eV Core-core repulsion = 21540.416515 eV Total energy + Delta-G solvation = -3525.653190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79805 -38.69226 -37.33250 -35.78290 -34.28685 -32.43170 -32.02560 -30.79657 -30.24480 -28.40821 -26.19659 -24.52887 -22.97159 -21.98424 -21.87453 -20.37919 -19.91408 -19.52181 -17.82890 -17.19544 -16.17921 -16.02743 -15.77915 -15.45716 -15.18009 -14.60148 -14.47442 -14.29609 -14.11264 -13.90016 -13.71725 -13.42218 -13.02486 -12.70453 -12.54996 -12.36011 -12.23756 -12.12744 -11.91953 -11.76046 -11.40483 -11.16054 -11.07570 -11.02302 -11.00050 -10.77599 -10.38644 -10.25963 -10.17055 -9.98974 -9.95406 -9.51690 -9.18722 -8.79768 -8.40677 -8.15187 -6.23469 -4.25898 3.20649 3.26231 3.32256 3.40560 3.69831 3.85172 4.31158 4.34684 4.58778 4.67416 4.71853 4.78463 4.88761 5.00487 5.10443 5.11954 5.19236 5.23928 5.33580 5.34978 5.40475 5.43375 5.50015 5.52578 5.54796 5.63104 5.64476 5.71521 5.83811 5.92663 6.00207 6.14559 6.17347 6.24396 6.27862 6.34749 6.60548 6.76231 6.94565 7.05299 7.21105 7.32933 7.34036 7.38759 8.11859 8.49569 8.73153 8.92009 9.36770 10.88444 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.003488 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.454128 B = 8025.008581 C = 9209.817913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.707 5.707 11 C 0.497 3.503 12 O -0.546 6.546 13 C 0.037 3.963 14 N -0.663 5.663 15 C 0.093 3.907 16 H 0.056 0.944 17 C -0.131 4.131 18 C 0.070 3.930 19 O -0.574 6.574 20 C -0.068 4.068 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.109 4.109 26 H 0.268 0.732 27 H 0.024 0.976 28 H 0.021 0.979 29 H 0.396 0.604 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.351 0.649 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.380 0.620 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.469 -16.054 -0.529 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.099 3.901 10 N -0.356 5.356 11 C 0.281 3.719 12 O -0.424 6.424 13 C -0.095 4.095 14 N -0.298 5.298 15 C -0.017 4.017 16 H 0.075 0.925 17 C -0.169 4.169 18 C -0.008 4.008 19 O -0.379 6.379 20 C -0.087 4.087 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.147 4.147 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.229 0.771 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.173 0.827 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.227 0.773 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.102 0.898 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.241 -15.347 -1.743 23.901 hybrid contribution -0.705 0.414 1.395 1.617 sum 17.536 -14.933 -0.348 23.035 Atomic orbital electron populations 1.69881 1.06220 1.27443 1.49430 1.24798 0.94788 0.99187 0.93842 0.86812 0.80528 0.83217 0.79096 1.19810 1.20906 1.18545 1.21094 0.88548 0.95204 1.53345 0.90285 1.19472 0.95187 0.78677 0.96725 1.46178 1.05697 1.11019 1.72753 1.20451 0.83164 0.90722 0.77515 1.90661 1.55431 1.46039 1.50316 1.22027 0.89653 0.95379 1.02461 1.60218 1.05398 1.09693 1.54452 1.21589 0.95490 0.90054 0.94535 0.92548 1.21903 0.99168 1.03706 0.92134 1.22265 0.89039 0.99636 0.89821 1.86459 1.34967 1.94956 1.21537 1.21112 0.96149 0.98114 0.93332 1.21619 0.97277 1.01926 0.94439 1.21506 0.98516 0.98492 0.96956 1.21524 0.96439 0.99812 0.97928 1.21552 0.97392 1.00703 0.96018 1.21525 0.97672 1.00319 0.95171 0.92250 0.95821 0.96158 0.77104 0.88159 0.92866 0.82704 0.90553 0.89875 0.93582 0.93790 0.77309 0.91745 0.90620 0.92786 0.92562 0.92334 0.92713 0.91762 0.92469 0.92757 0.89839 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.54 -14.80 9.83 -34.44 -0.34 -15.13 16 8 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 9 C 0.22 5.40 4.50 -5.19 -0.02 5.37 16 10 N -0.71 -13.88 5.55 -61.47 -0.34 -14.22 16 11 C 0.50 9.03 7.86 -10.98 -0.09 8.94 16 12 O -0.55 -12.03 16.10 5.55 0.09 -11.94 16 13 C 0.04 0.47 5.63 -4.98 -0.03 0.44 16 14 N -0.66 -7.93 4.68 -107.99 -0.51 -8.43 16 15 C 0.09 0.87 1.88 -67.71 -0.13 0.75 16 16 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 17 C -0.13 -1.20 4.59 -26.73 -0.12 -1.32 16 18 C 0.07 0.64 6.95 37.16 0.26 0.90 16 19 O -0.57 -5.60 13.66 -35.23 -0.48 -6.08 16 20 C -0.07 -0.63 2.01 -90.62 -0.18 -0.81 16 21 C -0.12 -1.11 4.44 -26.73 -0.12 -1.23 16 22 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 23 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 24 C -0.12 -1.10 5.92 -26.70 -0.16 -1.26 16 25 C -0.11 -1.11 4.75 -26.71 -0.13 -1.23 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 28 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 29 H 0.40 6.79 8.32 -40.82 -0.34 6.45 16 30 H 0.10 1.16 6.29 -51.93 -0.33 0.83 16 31 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 32 H 0.35 4.60 6.21 -39.29 -0.24 4.36 16 33 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.08 0.86 6.89 -51.93 -0.36 0.50 16 35 H 0.05 0.45 6.71 -51.93 -0.35 0.10 16 36 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.38 2.13 9.12 45.56 0.42 2.54 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.87 6.40 -51.93 -0.33 0.54 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 1.05 7.46 -51.93 -0.39 0.66 16 48 H 0.05 0.54 6.73 -51.93 -0.35 0.20 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -32.17 369.83 -8.68 -40.85 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.65 Total: 8.12 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.47 Total: -4.99 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.07 Total: -48.25 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.39 Total: -18.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.17 -8.68 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725111657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.615 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds