Wall clock time and date at job start Tue Mar 31 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99765 * 2 1 4 4 H 1.48497 * 109.46723 * 269.99820 * 3 2 1 5 5 H 1.48496 * 109.47104 * 29.99811 * 3 2 1 6 6 H 1.48502 * 109.47033 * 150.00317 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00128 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00075 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.34786 * 119.99729 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99586 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99856 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.46945 * 180.02562 * 13 11 10 15 15 C 1.46902 * 110.99673 * 175.43613 * 14 13 11 16 16 H 1.08993 * 109.47761 * 344.67541 * 15 14 13 17 17 C 1.53005 * 109.46591 * 224.67309 * 15 14 13 18 18 C 1.52997 * 109.47064 * 66.27761 * 17 15 14 19 19 O 1.42900 * 109.47201 * 184.48340 * 18 17 15 20 20 C 1.53001 * 109.46968 * 104.67911 * 15 14 13 21 21 C 1.52999 * 109.47054 * 294.47525 * 20 15 14 22 22 C 1.52994 * 109.47389 * 180.02562 * 21 20 15 23 23 C 1.53006 * 109.47165 * 300.00167 * 22 21 20 24 24 C 1.53003 * 109.46933 * 59.99975 * 23 22 21 25 25 C 1.52997 * 109.47489 * 54.48160 * 20 15 14 26 26 H 0.97005 * 120.00175 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46855 * 60.00852 * 9 7 2 28 28 H 1.08997 * 109.47459 * 300.00647 * 9 7 2 29 29 H 0.97001 * 120.00457 * 0.02562 * 10 9 7 30 30 H 1.08999 * 109.47674 * 59.99586 * 13 11 10 31 31 H 1.09006 * 109.46854 * 299.99850 * 13 11 10 32 32 H 1.00895 * 111.00049 * 51.47842 * 14 13 11 33 33 H 1.09008 * 109.46606 * 186.27489 * 17 15 14 34 34 H 1.08996 * 109.47310 * 306.27041 * 17 15 14 35 35 H 1.09000 * 109.47378 * 304.49349 * 18 17 15 36 36 H 1.09010 * 109.46973 * 64.49047 * 18 17 15 37 37 H 0.96702 * 113.99720 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.46659 * 174.48163 * 20 15 14 39 39 H 1.09003 * 109.46716 * 60.00230 * 21 20 15 40 40 H 1.09003 * 109.47477 * 300.00641 * 21 20 15 41 41 H 1.09003 * 109.47282 * 60.00236 * 22 21 20 42 42 H 1.08998 * 109.47356 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47222 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47097 * 300.00227 * 23 22 21 45 45 H 1.08996 * 109.46949 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.47210 * 59.99675 * 24 23 22 47 47 H 1.09002 * 109.46429 * 299.99712 * 25 20 15 48 48 H 1.08998 * 109.47269 * 59.99807 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3250 -2.8215 0.0001 12 8 6.1131 -1.8995 0.0006 13 6 5.8273 -4.2422 -0.0003 14 7 7.2964 -4.2422 0.0005 15 6 7.8227 -5.6094 0.1092 16 1 7.0276 -6.2801 0.4344 17 6 8.9626 -5.6372 1.1294 18 6 8.4075 -5.3349 2.5227 19 8 9.4849 -5.2577 3.4583 20 6 8.3475 -6.0637 -1.2543 21 6 7.1822 -6.1679 -2.2403 22 6 7.7067 -6.6229 -3.6036 23 6 8.7252 -5.6062 -4.1234 24 6 9.8905 -5.5021 -3.1374 25 6 9.3657 -5.0467 -1.7737 26 1 -0.4851 0.8401 0.0004 27 1 3.8752 -0.6796 0.8896 28 1 3.8746 -0.6806 -0.8904 29 1 3.3696 -3.3125 0.0001 30 1 5.4641 -4.7558 -0.8905 31 1 5.4639 -4.7564 0.8895 32 1 7.6575 -3.6559 0.7379 33 1 9.4263 -6.6238 1.1292 34 1 9.7065 -4.8862 0.8637 35 1 7.8744 -4.3843 2.5031 36 1 7.7232 -6.1291 2.8214 37 1 9.2060 -5.0678 4.3645 38 1 8.8260 -7.0378 -1.1532 39 1 6.7036 -5.1938 -2.3414 40 1 6.4567 -6.8925 -1.8703 41 1 8.1851 -7.5971 -3.5023 42 1 6.8766 -6.6967 -4.3062 43 1 9.0993 -5.9306 -5.0944 44 1 8.2469 -4.6321 -4.2247 45 1 10.6163 -4.7782 -3.5079 46 1 10.3689 -6.4763 -3.0359 47 1 8.8870 -4.0727 -1.8748 48 1 10.1958 -4.9725 -1.0713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725111657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:42 Heat of formation + Delta-G solvation = -143.110988 kcal Electronic energy + Delta-G solvation = -25067.138580 eV Core-core repulsion = 21540.416515 eV Total energy + Delta-G solvation = -3526.722065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85584 -39.93568 -38.05347 -36.67417 -36.06556 -34.40668 -33.03174 -31.54641 -30.98173 -30.20381 -27.36106 -25.49720 -23.88507 -23.59679 -22.69178 -21.47087 -21.11286 -20.34643 -19.15730 -18.46714 -17.63946 -17.24293 -16.80866 -16.57128 -16.30134 -16.02435 -15.74002 -15.18431 -15.08323 -14.86711 -14.71025 -14.58495 -14.40401 -14.30370 -13.85379 -13.51738 -13.29772 -13.07927 -13.00543 -12.78021 -12.68217 -12.60365 -12.14060 -11.94721 -11.91359 -11.83975 -11.76427 -11.65968 -11.18448 -10.96038 -10.93007 -10.92720 -10.72162 -10.65301 -9.92088 -9.26599 -8.40845 -6.47619 1.31718 1.34188 1.46294 1.75789 2.26915 2.37442 2.94728 3.20807 3.29633 3.83133 3.92749 3.97149 3.98305 4.09027 4.18392 4.28807 4.33322 4.43567 4.46413 4.49307 4.61546 4.65836 4.69856 4.78534 4.79007 4.80170 4.87679 4.89671 5.00121 5.02831 5.11707 5.20401 5.25834 5.28071 5.38337 5.43357 5.49409 5.50904 5.53221 5.57421 5.79591 6.02932 6.13097 6.38262 6.53800 6.82341 6.87729 7.15706 7.44129 8.73831 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.003488 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.454128 B = 8025.008581 C = 9209.817913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.233 3.767 10 N -0.707 5.707 11 C 0.496 3.504 12 O -0.586 6.586 13 C 0.052 3.948 14 N -0.674 5.674 15 C 0.099 3.901 16 H 0.073 0.927 17 C -0.125 4.125 18 C 0.070 3.930 19 O -0.592 6.592 20 C -0.064 4.064 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.106 4.106 26 H 0.272 0.728 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.408 0.592 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.344 0.656 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.567 -17.775 -0.316 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.358 5.358 11 C 0.284 3.716 12 O -0.467 6.467 13 C -0.080 4.080 14 N -0.308 5.308 15 C -0.010 4.010 16 H 0.091 0.909 17 C -0.163 4.163 18 C -0.008 4.008 19 O -0.401 6.401 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.143 4.143 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.026 0.974 29 H 0.244 0.756 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.246 0.754 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.337 -17.108 -1.523 25.863 hybrid contribution -1.027 0.895 1.331 1.905 sum 18.309 -16.212 -0.192 24.456 Atomic orbital electron populations 1.69979 1.07648 1.28589 1.50748 1.25583 0.95516 1.02602 0.93627 0.85874 0.79231 0.79485 0.79384 1.19155 1.19770 1.18572 1.21302 0.89981 0.94579 1.52515 0.92149 1.19050 0.93293 0.81280 0.95444 1.46028 1.06899 1.09551 1.73321 1.21385 0.81942 0.92747 0.75556 1.90641 1.56219 1.48017 1.51818 1.21965 0.90182 0.91280 1.04529 1.60225 1.04837 1.11269 1.54516 1.21611 0.95909 0.88734 0.94780 0.90877 1.21837 0.98657 1.03688 0.92153 1.22276 0.89042 0.99678 0.89757 1.86414 1.35736 1.95032 1.22881 1.21115 0.95783 0.98416 0.93041 1.21595 0.97550 1.01021 0.94973 1.21502 0.98415 0.98804 0.96600 1.21524 0.96618 0.99056 0.98592 1.21539 0.97277 1.01271 0.95374 1.21448 0.97787 0.99256 0.95851 0.91853 0.97072 0.97437 0.75600 0.86480 0.89950 0.83522 0.89533 0.91468 0.94561 0.92201 0.75436 0.90075 0.92896 0.91476 0.91214 0.92325 0.91793 0.93749 0.92761 0.91410 0.92761 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.96 21.44 0.30 -55.10 16 2 C 0.03 1.53 5.47 84.65 0.46 1.99 16 3 Si 0.94 44.19 27.47 68.60 1.88 46.07 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 7 C -0.55 -29.95 9.83 25.60 0.25 -29.69 16 8 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 9 C 0.23 11.39 4.50 85.63 0.38 11.77 16 10 N -0.71 -27.41 5.55 -466.77 -2.59 -30.00 16 11 C 0.50 17.67 7.86 87.65 0.69 18.36 16 12 O -0.59 -25.93 16.10 -3.04 -0.05 -25.98 16 13 C 0.05 1.22 5.63 85.55 0.48 1.70 16 14 N -0.67 -15.26 4.68 -495.57 -2.32 -17.58 16 15 C 0.10 1.62 1.88 44.92 0.08 1.70 16 16 H 0.07 1.00 7.52 -2.39 -0.02 0.98 16 17 C -0.13 -2.05 4.59 30.59 0.14 -1.91 16 18 C 0.07 1.15 6.95 71.98 0.50 1.65 16 19 O -0.59 -10.62 13.66 -148.98 -2.04 -12.66 16 20 C -0.06 -1.04 2.01 -10.79 -0.02 -1.06 16 21 C -0.11 -1.95 4.44 30.59 0.14 -1.81 16 22 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 23 C -0.12 -2.14 5.92 30.60 0.18 -1.96 16 24 C -0.12 -2.01 5.92 30.61 0.18 -1.83 16 25 C -0.11 -2.05 4.75 30.61 0.15 -1.90 16 26 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 27 H 0.01 0.58 7.20 -2.39 -0.02 0.57 16 28 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 29 H 0.41 13.64 8.32 -92.71 -0.77 12.87 16 30 H 0.12 2.41 6.29 -2.39 -0.02 2.40 16 31 H 0.08 1.50 8.00 -2.38 -0.02 1.48 16 32 H 0.34 8.79 6.21 -89.70 -0.56 8.24 16 33 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16 34 H 0.07 1.32 6.89 -2.39 -0.02 1.31 16 35 H 0.04 0.66 6.71 -2.39 -0.02 0.64 16 36 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.40 3.83 9.12 -74.06 -0.68 3.15 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.16 6.40 -2.39 -0.02 1.14 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.05 1.38 7.46 -2.39 -0.02 1.36 16 48 H 0.05 1.05 6.73 -2.39 -0.02 1.03 16 Total: -1.00 -69.53 369.83 -2.11 -71.63 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -1.10 Total: 28.28 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 3.80 Total: -4.66 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -4.61 Total: -102.68 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -2.08 Total: -38.64 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -69.53 -2.11 -71.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725111657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.476 kcal (2) G-P(sol) polarization free energy of solvation -69.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds