Wall clock time and date at job start Tue Mar 31 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00100 * 2 1 4 4 H 1.48499 * 109.46936 * 269.99599 * 3 2 1 5 5 H 1.48496 * 109.47207 * 29.99713 * 3 2 1 6 6 H 1.48511 * 109.46911 * 149.99943 * 3 2 1 7 7 C 1.37873 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00284 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99880 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99870 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00086 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.46960 * 179.97438 * 13 11 10 15 15 C 1.46902 * 110.99757 * 176.33449 * 14 13 11 16 16 H 1.08997 * 109.46962 * 323.57643 * 15 14 13 17 17 C 1.53006 * 109.46914 * 83.58012 * 15 14 13 18 18 C 1.52997 * 109.47234 * 63.42040 * 17 15 14 19 19 O 1.42905 * 109.46781 * 179.51791 * 18 17 15 20 20 C 1.53004 * 109.46953 * 203.57331 * 15 14 13 21 21 C 1.53002 * 109.47000 * 180.02562 * 20 15 14 22 22 C 1.52996 * 109.47094 * 180.02562 * 21 20 15 23 23 C 1.52997 * 109.47628 * 59.99724 * 22 21 20 24 24 C 1.53002 * 109.47109 * 300.00267 * 23 22 21 25 25 C 1.52996 * 109.46809 * 60.00591 * 20 15 14 26 26 H 0.96996 * 119.99559 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47317 * 60.00192 * 9 7 2 28 28 H 1.08995 * 109.47212 * 299.99502 * 9 7 2 29 29 H 0.97002 * 120.00568 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.46870 * 59.99545 * 13 11 10 31 31 H 1.08995 * 109.46604 * 299.99502 * 13 11 10 32 32 H 1.00901 * 111.00150 * 300.29102 * 14 13 11 33 33 H 1.09001 * 109.46753 * 303.41697 * 17 15 14 34 34 H 1.08997 * 109.46994 * 183.42393 * 17 15 14 35 35 H 1.08994 * 109.47318 * 59.51868 * 18 17 15 36 36 H 1.08998 * 109.47174 * 299.51536 * 18 17 15 37 37 H 0.96703 * 113.99290 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47541 * 299.99958 * 20 15 14 39 39 H 1.09005 * 109.47124 * 300.00249 * 21 20 15 40 40 H 1.09001 * 109.47307 * 60.00228 * 21 20 15 41 41 H 1.09005 * 109.46844 * 299.99815 * 22 21 20 42 42 H 1.09000 * 109.47197 * 180.02562 * 22 21 20 43 43 H 1.08993 * 109.47203 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.46934 * 60.00146 * 23 22 21 45 45 H 1.08997 * 109.46826 * 299.99754 * 24 23 22 46 46 H 1.09002 * 109.46852 * 179.97438 * 24 23 22 47 47 H 1.09009 * 109.46953 * 299.99500 * 25 20 15 48 48 H 1.08997 * 109.47586 * 59.99394 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7328 -6.0289 0.0006 14 7 1.9983 -7.3010 0.0005 15 6 2.9203 -8.4413 -0.0866 16 1 3.7569 -8.1832 -0.7359 17 6 3.4444 -8.7812 1.3101 18 6 2.2801 -9.2256 2.1976 19 8 2.7713 -9.5538 3.4988 20 6 2.1820 -9.6513 -0.6627 21 6 3.1421 -10.8391 -0.7528 22 6 2.4041 -12.0489 -1.3294 23 6 1.8807 -11.7090 -2.7263 24 6 0.9206 -10.5212 -2.6362 25 6 1.6579 -9.3115 -2.0593 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5572 -0.8897 28 1 0.6240 -2.5568 0.8903 29 1 3.1566 -3.4355 0.0002 30 1 3.3588 -5.9713 0.8910 31 1 3.3600 -5.9711 -0.8889 32 1 1.4056 -7.3765 0.8136 33 1 3.9173 -7.9006 1.7449 34 1 4.1745 -9.5873 1.2379 35 1 1.8019 -10.1010 1.7583 36 1 1.5541 -8.4164 2.2767 37 1 2.0859 -9.8442 4.1161 38 1 1.3454 -9.9094 -0.0134 39 1 3.9791 -10.5814 -1.4018 40 1 3.5152 -11.0811 0.2424 41 1 1.5669 -12.3068 -0.6806 42 1 3.0880 -12.8953 -1.3932 43 1 1.3546 -12.5707 -3.1368 44 1 2.7179 -11.4511 -3.3751 45 1 0.0835 -10.7791 -1.9874 46 1 0.5481 -10.2788 -3.6315 47 1 0.9737 -8.4653 -1.9947 48 1 2.4945 -9.0534 -2.7085 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725111659.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:49 Heat of formation + Delta-G solvation = -121.157332 kcal Electronic energy + Delta-G solvation = -24782.900393 eV Core-core repulsion = 21257.130309 eV Total energy + Delta-G solvation = -3525.770083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84145 -38.62366 -37.24163 -35.86022 -34.12937 -32.38564 -32.08023 -30.84584 -29.83552 -27.89701 -26.03832 -24.59996 -23.00483 -22.44689 -22.18959 -20.13092 -19.81234 -19.46294 -17.77429 -17.14236 -16.14679 -15.85354 -15.68468 -15.08849 -15.00078 -14.78962 -14.41054 -14.26822 -14.12175 -14.00389 -13.72797 -13.39480 -13.00053 -12.61773 -12.45390 -12.25113 -12.16997 -11.95588 -11.86872 -11.55627 -11.48352 -11.38792 -11.22261 -10.97347 -10.87430 -10.84372 -10.48297 -10.31434 -10.16507 -10.12670 -10.00782 -9.39083 -9.02319 -8.72685 -8.32192 -7.84866 -6.16247 -4.23106 3.24281 3.30305 3.32680 3.41503 3.73845 3.99679 4.30794 4.40630 4.51194 4.62957 4.73064 4.76360 4.83140 5.06251 5.12650 5.18691 5.19814 5.20948 5.31570 5.38680 5.40058 5.43547 5.48995 5.50269 5.55314 5.56276 5.65916 5.69307 5.82134 5.90102 5.94423 6.01829 6.03449 6.07766 6.23058 6.39790 6.50281 6.93894 7.32609 7.36114 7.40370 7.46833 7.53367 7.68409 7.98082 8.65340 8.79831 9.14047 9.43749 10.94004 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.002759 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.624043 B =10144.792691 C =10924.937554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.497 3.503 12 O -0.544 6.544 13 C 0.039 3.961 14 N -0.663 5.663 15 C 0.095 3.905 16 H 0.084 0.916 17 C -0.154 4.154 18 C 0.071 3.929 19 O -0.576 6.576 20 C -0.075 4.075 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.107 4.107 26 H 0.266 0.734 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.389 0.611 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.348 0.652 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.379 0.621 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.082 0.918 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 -23.864 -0.371 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.281 3.719 12 O -0.421 6.421 13 C -0.094 4.094 14 N -0.296 5.296 15 C -0.016 4.016 16 H 0.102 0.898 17 C -0.193 4.193 18 C -0.007 4.007 19 O -0.382 6.382 20 C -0.094 4.094 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.145 4.145 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.222 0.778 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.169 0.831 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.680 -23.660 -1.325 24.620 hybrid contribution 0.751 0.946 1.148 1.666 sum 7.431 -22.714 -0.176 23.899 Atomic orbital electron populations 1.69979 1.06105 1.27278 1.48945 1.24956 0.94918 0.99452 0.94727 0.86418 0.79611 0.82667 0.78227 1.20448 1.21007 1.19768 1.21234 0.93249 0.90502 1.53141 0.91936 1.19074 0.88291 0.81937 0.97656 1.46452 1.11046 1.06155 1.72795 1.20364 0.89556 0.84200 0.77827 1.90657 1.16680 1.84726 1.50078 1.21877 0.95683 0.89613 1.02199 1.60203 1.21156 0.99646 1.48563 1.21661 0.94771 0.91092 0.94053 0.89756 1.22266 0.98514 1.02563 0.95967 1.22286 0.96258 0.98906 0.83206 1.86462 1.39081 1.89448 1.23161 1.21156 0.97751 0.92990 0.97515 1.21660 0.98198 0.94810 1.00856 1.21502 0.99799 0.97458 0.96712 1.21548 0.99215 0.98090 0.96875 1.21555 0.98120 0.95344 1.00826 1.21464 1.00368 0.97928 0.94693 0.92458 0.95570 0.95662 0.77835 0.92879 0.88597 0.83051 0.91294 0.90414 0.92933 0.93559 0.77431 0.91088 0.91979 0.91899 0.92233 0.92376 0.92556 0.92192 0.92268 0.92256 0.89939 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.72 -14.97 5.55 -61.47 -0.34 -15.32 16 11 C 0.50 9.77 7.88 -10.98 -0.09 9.68 16 12 O -0.54 -12.98 16.28 5.56 0.09 -12.88 16 13 C 0.04 0.54 5.97 -4.98 -0.03 0.51 16 14 N -0.66 -8.53 5.04 -107.99 -0.54 -9.07 16 15 C 0.09 0.93 1.92 -67.71 -0.13 0.80 16 16 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 17 C -0.15 -1.47 4.98 -26.73 -0.13 -1.61 16 18 C 0.07 0.68 6.39 37.16 0.24 0.91 16 19 O -0.58 -5.79 13.66 -35.23 -0.48 -6.27 16 20 C -0.08 -0.68 1.52 -90.62 -0.14 -0.82 16 21 C -0.12 -0.91 4.85 -26.73 -0.13 -1.04 16 22 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 23 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 24 C -0.12 -1.09 5.92 -26.75 -0.16 -1.25 16 25 C -0.11 -1.09 5.05 -26.75 -0.13 -1.23 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 30 H 0.05 0.65 7.37 -51.93 -0.38 0.27 16 31 H 0.10 1.17 7.97 -51.93 -0.41 0.75 16 32 H 0.35 4.74 6.34 -39.29 -0.25 4.49 16 33 H 0.07 0.73 7.35 -51.93 -0.38 0.35 16 34 H 0.08 0.70 6.62 -51.93 -0.34 0.36 16 35 H 0.05 0.44 6.34 -51.93 -0.33 0.11 16 36 H 0.05 0.47 6.40 -51.93 -0.33 0.14 16 37 H 0.38 2.19 9.12 45.56 0.42 2.61 16 38 H 0.07 0.68 6.35 -51.93 -0.33 0.35 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.48 6.51 -51.93 -0.34 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 1.05 7.60 -51.92 -0.39 0.66 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -32.73 372.55 -8.99 -41.72 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.58 Total: 8.76 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.46 Total: -2.95 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.15 Total: -49.87 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.39 Total: -19.16 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.73 -8.99 -41.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725111659.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.435 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds