Wall clock time and date at job start Tue Mar 31 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00100 * 2 1 4 4 H 1.48499 * 109.46936 * 269.99599 * 3 2 1 5 5 H 1.48496 * 109.47207 * 29.99713 * 3 2 1 6 6 H 1.48511 * 109.46911 * 149.99943 * 3 2 1 7 7 C 1.37873 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00284 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99880 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99870 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00086 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.46960 * 179.97438 * 13 11 10 15 15 C 1.46902 * 110.99757 * 176.33449 * 14 13 11 16 16 H 1.08997 * 109.46962 * 323.57643 * 15 14 13 17 17 C 1.53006 * 109.46914 * 83.58012 * 15 14 13 18 18 C 1.52997 * 109.47234 * 63.42040 * 17 15 14 19 19 O 1.42905 * 109.46781 * 179.51791 * 18 17 15 20 20 C 1.53004 * 109.46953 * 203.57331 * 15 14 13 21 21 C 1.53002 * 109.47000 * 180.02562 * 20 15 14 22 22 C 1.52996 * 109.47094 * 180.02562 * 21 20 15 23 23 C 1.52997 * 109.47628 * 59.99724 * 22 21 20 24 24 C 1.53002 * 109.47109 * 300.00267 * 23 22 21 25 25 C 1.52996 * 109.46809 * 60.00591 * 20 15 14 26 26 H 0.96996 * 119.99559 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47317 * 60.00192 * 9 7 2 28 28 H 1.08995 * 109.47212 * 299.99502 * 9 7 2 29 29 H 0.97002 * 120.00568 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.46870 * 59.99545 * 13 11 10 31 31 H 1.08995 * 109.46604 * 299.99502 * 13 11 10 32 32 H 1.00901 * 111.00150 * 300.29102 * 14 13 11 33 33 H 1.09001 * 109.46753 * 303.41697 * 17 15 14 34 34 H 1.08997 * 109.46994 * 183.42393 * 17 15 14 35 35 H 1.08994 * 109.47318 * 59.51868 * 18 17 15 36 36 H 1.08998 * 109.47174 * 299.51536 * 18 17 15 37 37 H 0.96703 * 113.99290 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47541 * 299.99958 * 20 15 14 39 39 H 1.09005 * 109.47124 * 300.00249 * 21 20 15 40 40 H 1.09001 * 109.47307 * 60.00228 * 21 20 15 41 41 H 1.09005 * 109.46844 * 299.99815 * 22 21 20 42 42 H 1.09000 * 109.47197 * 180.02562 * 22 21 20 43 43 H 1.08993 * 109.47203 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.46934 * 60.00146 * 23 22 21 45 45 H 1.08997 * 109.46826 * 299.99754 * 24 23 22 46 46 H 1.09002 * 109.46852 * 179.97438 * 24 23 22 47 47 H 1.09009 * 109.46953 * 299.99500 * 25 20 15 48 48 H 1.08997 * 109.47586 * 59.99394 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7328 -6.0289 0.0006 14 7 1.9983 -7.3010 0.0005 15 6 2.9203 -8.4413 -0.0866 16 1 3.7569 -8.1832 -0.7359 17 6 3.4444 -8.7812 1.3101 18 6 2.2801 -9.2256 2.1976 19 8 2.7713 -9.5538 3.4988 20 6 2.1820 -9.6513 -0.6627 21 6 3.1421 -10.8391 -0.7528 22 6 2.4041 -12.0489 -1.3294 23 6 1.8807 -11.7090 -2.7263 24 6 0.9206 -10.5212 -2.6362 25 6 1.6579 -9.3115 -2.0593 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5572 -0.8897 28 1 0.6240 -2.5568 0.8903 29 1 3.1566 -3.4355 0.0002 30 1 3.3588 -5.9713 0.8910 31 1 3.3600 -5.9711 -0.8889 32 1 1.4056 -7.3765 0.8136 33 1 3.9173 -7.9006 1.7449 34 1 4.1745 -9.5873 1.2379 35 1 1.8019 -10.1010 1.7583 36 1 1.5541 -8.4164 2.2767 37 1 2.0859 -9.8442 4.1161 38 1 1.3454 -9.9094 -0.0134 39 1 3.9791 -10.5814 -1.4018 40 1 3.5152 -11.0811 0.2424 41 1 1.5669 -12.3068 -0.6806 42 1 3.0880 -12.8953 -1.3932 43 1 1.3546 -12.5707 -3.1368 44 1 2.7179 -11.4511 -3.3751 45 1 0.0835 -10.7791 -1.9874 46 1 0.5481 -10.2788 -3.6315 47 1 0.9737 -8.4653 -1.9947 48 1 2.4945 -9.0534 -2.7085 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725111659.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:48 Heat of formation + Delta-G solvation = -146.456962 kcal Electronic energy + Delta-G solvation = -24783.997467 eV Core-core repulsion = 21257.130309 eV Total energy + Delta-G solvation = -3526.867158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83475 -40.05180 -37.99070 -36.78218 -36.05685 -34.33931 -33.11243 -31.55945 -30.57443 -29.69643 -27.38837 -25.57706 -24.40123 -23.47126 -23.15054 -21.38885 -20.83737 -20.39116 -18.97263 -18.46093 -17.54843 -17.21997 -16.82817 -16.63408 -16.26473 -15.82820 -15.60899 -15.38445 -14.90648 -14.84913 -14.73535 -14.45177 -14.35278 -14.10571 -13.87981 -13.54729 -13.15717 -13.02724 -12.94334 -12.86377 -12.70459 -12.58418 -12.26469 -12.22932 -12.17978 -11.89874 -11.53366 -11.48860 -11.21959 -10.94243 -10.85861 -10.80414 -10.75523 -10.61794 -9.81002 -9.30547 -8.29514 -6.46143 1.42638 1.45125 1.56279 1.81460 2.29324 2.50122 3.05337 3.16708 3.44763 3.66171 3.91309 3.96931 4.00763 4.08244 4.14357 4.31078 4.36223 4.42754 4.46340 4.49118 4.53951 4.63437 4.69359 4.74473 4.81134 4.83418 4.87173 4.99096 5.09265 5.11772 5.19402 5.24666 5.28894 5.34321 5.34630 5.39785 5.49362 5.52710 5.65248 5.67755 5.70665 5.85241 6.03416 6.34466 6.65438 6.83268 6.95930 7.23598 7.53853 8.82781 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.002759 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.624043 B =10144.792691 C =10924.937554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.268 3.732 10 N -0.710 5.710 11 C 0.492 3.508 12 O -0.591 6.591 13 C 0.056 3.944 14 N -0.678 5.678 15 C 0.101 3.899 16 H 0.094 0.906 17 C -0.148 4.148 18 C 0.071 3.929 19 O -0.593 6.593 20 C -0.070 4.070 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.104 4.104 26 H 0.269 0.731 27 H -0.015 1.015 28 H -0.014 1.014 29 H 0.408 0.592 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.342 0.658 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.395 0.605 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.158 -24.762 -0.356 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.145 3.855 10 N -0.361 5.361 11 C 0.279 3.721 12 O -0.472 6.472 13 C -0.076 4.076 14 N -0.310 5.310 15 C -0.009 4.009 16 H 0.112 0.888 17 C -0.187 4.187 18 C -0.006 4.006 19 O -0.401 6.401 20 C -0.089 4.089 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.142 4.142 26 H 0.077 0.923 27 H 0.003 0.997 28 H 0.004 0.996 29 H 0.243 0.757 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.245 0.755 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.591 -24.601 -1.304 26.437 hybrid contribution -0.220 1.146 1.145 1.635 sum 9.371 -23.455 -0.158 25.258 Atomic orbital electron populations 1.70144 1.08297 1.28547 1.50043 1.26081 0.95780 1.03952 0.93882 0.85155 0.78492 0.76950 0.78613 1.19581 1.20972 1.17885 1.21632 0.94310 0.90616 1.52785 0.89806 1.18493 0.88697 0.84413 0.93886 1.46193 1.11121 1.05594 1.73200 1.21469 0.90009 0.84894 0.75694 1.90634 1.19330 1.85398 1.51793 1.21778 0.93987 0.87346 1.04505 1.60209 1.22080 1.00156 1.48549 1.21686 0.94440 0.90082 0.94648 0.88755 1.22201 0.98574 1.02548 0.95380 1.22277 0.96050 0.98991 0.83296 1.86412 1.40430 1.89562 1.23679 1.21109 0.97930 0.93375 0.96471 1.21616 0.97835 0.94080 1.01401 1.21508 0.99995 0.97665 0.96230 1.21525 0.98935 0.97564 0.97391 1.21543 0.98300 0.95564 1.00424 1.21391 0.99780 0.97346 0.95656 0.92265 0.99712 0.99636 0.75668 0.90321 0.86062 0.83732 0.92110 0.89329 0.91845 0.94725 0.75513 0.91658 0.91465 0.91255 0.92346 0.91128 0.91790 0.91954 0.92702 0.92604 0.93026 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.98 42.50 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.89 5.43 85.63 0.46 15.35 16 10 N -0.71 -30.01 5.55 -466.79 -2.59 -32.60 16 11 C 0.49 19.58 7.88 87.66 0.69 20.27 16 12 O -0.59 -29.43 16.28 -3.01 -0.05 -29.48 16 13 C 0.06 1.46 5.97 85.56 0.51 1.97 16 14 N -0.68 -16.95 5.04 -495.57 -2.50 -19.45 16 15 C 0.10 1.80 1.92 44.92 0.09 1.89 16 16 H 0.09 1.54 7.77 -2.39 -0.02 1.52 16 17 C -0.15 -2.52 4.98 30.60 0.15 -2.36 16 18 C 0.07 1.26 6.39 71.98 0.46 1.72 16 19 O -0.59 -10.99 13.66 -148.98 -2.04 -13.02 16 20 C -0.07 -1.18 1.52 -10.79 -0.02 -1.19 16 21 C -0.11 -1.46 4.85 30.59 0.15 -1.31 16 22 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 23 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 24 C -0.12 -2.11 5.92 30.58 0.18 -1.93 16 25 C -0.10 -2.07 5.05 30.58 0.15 -1.92 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.41 14.08 8.32 -92.71 -0.77 13.31 16 30 H 0.08 1.71 7.37 -2.39 -0.02 1.69 16 31 H 0.12 2.61 7.97 -2.39 -0.02 2.59 16 32 H 0.34 9.33 6.34 -89.69 -0.57 8.76 16 33 H 0.06 1.15 7.35 -2.39 -0.02 1.13 16 34 H 0.09 1.34 6.62 -2.39 -0.02 1.33 16 35 H 0.06 0.97 6.34 -2.39 -0.02 0.96 16 36 H 0.03 0.69 6.40 -2.39 -0.02 0.68 16 37 H 0.40 4.05 9.12 -74.06 -0.68 3.37 16 38 H 0.07 1.19 6.35 -2.39 -0.02 1.17 16 39 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.07 0.85 6.51 -2.39 -0.02 0.83 16 41 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 1.35 7.60 -2.38 -0.02 1.33 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -73.50 372.55 -2.01 -75.51 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -1.05 Total: 30.73 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 3.89 Total: 0.21 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -4.80 Total: -108.48 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.08 Total: -42.50 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -73.50 -2.01 -75.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725111659.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.947 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds