Wall clock time and date at job start Tue Mar 31 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99649 * 2 1 4 4 H 1.48492 * 109.47060 * 269.99623 * 3 2 1 5 5 H 1.48501 * 109.47033 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.46895 * 149.99343 * 3 2 1 7 7 C 1.38945 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00206 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99801 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00202 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99775 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46862 * 179.97438 * 12 10 9 14 14 C 1.34723 * 117.00140 * 180.02562 * 13 12 10 15 15 O 1.21485 * 119.99395 * 0.27073 * 14 13 12 16 16 C 1.47656 * 120.00454 * 180.02562 * 14 13 12 17 17 C 1.39623 * 120.13327 * 359.72126 * 16 14 13 18 18 C 1.38385 * 119.80186 * 179.81500 * 17 16 14 19 19 O 1.35933 * 119.96516 * 180.18590 * 18 17 16 20 20 C 1.38884 * 120.07130 * 0.44006 * 18 17 16 21 21 C 1.38198 * 120.27510 * 359.78787 * 20 18 17 22 22 C 1.38153 * 120.19938 * 0.02562 * 21 20 18 23 23 Cl 1.73599 * 120.04307 * 179.97438 * 22 21 20 24 24 H 0.96994 * 120.00695 * 0.02562 * 1 2 3 25 25 H 0.96992 * 120.00026 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47158 * 59.99972 * 12 10 9 27 27 H 1.08998 * 109.46923 * 299.99608 * 12 10 9 28 28 H 1.08004 * 120.10110 * 0.02562 * 17 16 14 29 29 H 0.96704 * 114.00032 * 270.25887 * 19 18 17 30 30 H 1.07999 * 119.86404 * 179.77007 * 20 18 17 31 31 H 1.08003 * 119.90317 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4404 0.7002 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5608 -2.3703 0.0022 13 8 6.0448 -3.7392 0.0026 14 6 7.3804 -3.9158 0.0042 15 8 8.1204 -2.9523 0.0102 16 6 7.9449 -5.2802 0.0041 17 6 7.0970 -6.3895 0.0082 18 6 7.6334 -7.6651 0.0042 19 8 6.8110 -8.7475 0.0044 20 6 9.0111 -7.8408 0.0053 21 6 9.8532 -6.7450 0.0060 22 6 9.3298 -5.4664 0.0061 23 17 10.3914 -4.0928 0.0077 24 1 -0.4851 0.8399 -0.0004 25 1 3.8648 -0.3632 0.0007 26 1 5.9234 -1.8568 0.8927 27 1 5.9248 -1.8561 -0.8873 28 1 6.0257 -6.2524 0.0111 29 1 6.5723 -9.0599 0.8879 30 1 9.4261 -8.8378 0.0060 31 1 10.9236 -6.8885 0.0073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785871217.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:28 Heat of formation + Delta-G solvation = -125.792604 kcal Electronic energy + Delta-G solvation = -20766.161261 eV Core-core repulsion = 17039.848302 eV Total energy + Delta-G solvation = -3726.312959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 299.044 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76020 -39.67833 -38.34043 -37.39878 -36.22655 -36.11754 -34.07289 -32.05336 -31.78801 -29.95094 -28.63693 -25.10155 -24.09297 -23.00787 -21.25258 -19.66633 -18.90842 -18.54793 -17.67254 -17.15133 -16.47982 -16.39609 -16.00151 -15.62610 -15.23139 -14.87606 -14.38715 -14.28519 -13.68366 -13.42609 -13.04352 -12.86193 -12.68394 -12.40615 -12.26495 -12.16664 -11.61833 -11.51225 -11.26907 -11.11809 -10.65459 -10.54119 -10.08458 -10.02660 -9.68474 -9.59626 -8.93823 -8.68292 -8.30142 -6.39891 -3.92919 0.19966 0.67442 1.81711 2.30133 2.47469 2.98622 3.03369 3.12010 3.18458 3.54617 3.72366 4.03298 4.20810 4.33421 4.56256 4.78280 4.86149 5.01031 5.10634 5.30002 5.42704 5.46527 5.53786 5.64672 5.68628 5.84746 6.08661 6.40712 7.23592 7.43701 7.71710 7.99921 8.46875 8.82853 9.29083 9.64394 10.72348 Molecular weight = 299.04amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.003412 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.960049 B = 8204.920923 C = 9413.187669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.448 3.552 11 O -0.558 6.558 12 C 0.060 3.940 13 O -0.320 6.320 14 C 0.499 3.501 15 O -0.486 6.486 16 C -0.097 4.097 17 C -0.073 4.073 18 C 0.099 3.901 19 O -0.491 6.491 20 C -0.102 4.102 21 C -0.109 4.109 22 C 0.006 3.994 23 Cl -0.028 7.028 24 H 0.276 0.724 25 H 0.373 0.627 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.396 0.604 30 H 0.144 0.856 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.146 -12.100 1.683 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.219 5.219 10 C 0.233 3.767 11 O -0.439 6.439 12 C -0.018 4.018 13 O -0.234 6.234 14 C 0.342 3.658 15 O -0.375 6.375 16 C -0.099 4.099 17 C -0.091 4.091 18 C 0.054 3.946 19 O -0.302 6.302 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.021 4.021 23 Cl 0.002 6.998 24 H 0.086 0.914 25 H 0.206 0.794 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.179 0.821 29 H 0.253 0.747 30 H 0.162 0.838 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 20.832 -12.195 1.081 24.163 hybrid contribution 0.615 1.609 0.496 1.792 sum 21.448 -10.587 1.576 23.970 Atomic orbital electron populations 1.69607 1.05662 1.27788 1.48333 1.25034 0.95512 0.98064 0.97231 0.86683 0.79873 0.83862 0.79121 1.19385 1.19942 1.19327 1.19424 0.78657 0.96886 1.48705 0.85992 1.42025 1.07638 1.05703 1.66498 1.19168 0.86869 0.85161 0.85538 1.90601 1.69033 1.30701 1.53597 1.22782 0.95132 0.80048 1.03797 1.86577 1.22130 1.31503 1.83224 1.20902 0.81475 0.89301 0.74088 1.90920 1.60127 1.41809 1.44638 1.18774 0.91556 0.91455 1.08082 1.21963 1.02060 0.90377 0.94736 1.18376 0.88906 0.86490 1.00819 1.84876 1.66732 1.44573 1.33982 1.21648 0.92537 0.99792 0.98082 1.20891 1.01071 0.89388 1.01460 1.21052 0.89856 0.90222 1.00980 1.98430 1.63663 1.41747 1.96004 0.91369 0.79359 0.89219 0.89207 0.82138 0.74716 0.83798 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.06 13.96 55.50 0.77 -24.28 16 2 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 18.99 27.74 -169.99 -4.71 14.27 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 7 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 9 N -0.58 -13.64 5.09 -10.96 -0.06 -13.70 16 10 C 0.45 10.26 7.86 -10.98 -0.09 10.17 16 11 O -0.56 -15.09 16.08 -14.11 -0.23 -15.32 16 12 C 0.06 1.07 5.95 36.01 0.21 1.28 16 13 O -0.32 -5.69 9.01 -47.24 -0.43 -6.11 16 14 C 0.50 7.86 7.89 34.58 0.27 8.14 16 15 O -0.49 -8.13 13.75 -19.25 -0.26 -8.39 16 16 C -0.10 -1.25 5.87 -104.97 -0.62 -1.87 16 17 C -0.07 -0.85 9.55 -39.01 -0.37 -1.22 16 18 C 0.10 0.93 6.70 -39.29 -0.26 0.66 16 19 O -0.49 -4.11 13.50 -19.53 -0.26 -4.38 16 20 C -0.10 -0.76 9.98 -39.36 -0.39 -1.15 16 21 C -0.11 -0.89 9.81 -39.63 -0.39 -1.28 16 22 C 0.01 0.07 6.35 -39.05 -0.25 -0.18 16 23 Cl -0.03 -0.34 26.01 -51.86 -1.35 -1.68 16 24 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 26 H 0.09 1.41 8.13 -51.93 -0.42 0.98 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.16 2.04 7.61 -52.48 -0.40 1.64 16 29 H 0.40 1.39 9.06 45.56 0.41 1.80 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16 LS Contribution 302.01 15.07 4.55 4.55 Total: -1.00 -34.37 302.01 -5.57 -39.94 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -1.47 Total: 8.15 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -2.13 Total: 6.95 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.72 Total: -37.98 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.18 Total: -34.20 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.35 Total: -1.68 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.37 -5.57 -39.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785871217.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.854 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds