Wall clock time and date at job start Tue Mar 31 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99649 * 2 1 4 4 H 1.48492 * 109.47060 * 269.99623 * 3 2 1 5 5 H 1.48501 * 109.47033 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.46895 * 149.99343 * 3 2 1 7 7 C 1.38945 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99924 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00206 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99801 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00202 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99775 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46862 * 179.97438 * 12 10 9 14 14 C 1.34723 * 117.00140 * 180.02562 * 13 12 10 15 15 O 1.21485 * 119.99395 * 0.27073 * 14 13 12 16 16 C 1.47656 * 120.00454 * 180.02562 * 14 13 12 17 17 C 1.39623 * 120.13327 * 359.72126 * 16 14 13 18 18 C 1.38385 * 119.80186 * 179.81500 * 17 16 14 19 19 O 1.35933 * 119.96516 * 180.18590 * 18 17 16 20 20 C 1.38884 * 120.07130 * 0.44006 * 18 17 16 21 21 C 1.38198 * 120.27510 * 359.78787 * 20 18 17 22 22 C 1.38153 * 120.19938 * 0.02562 * 21 20 18 23 23 Cl 1.73599 * 120.04307 * 179.97438 * 22 21 20 24 24 H 0.96994 * 120.00695 * 0.02562 * 1 2 3 25 25 H 0.96992 * 120.00026 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47158 * 59.99972 * 12 10 9 27 27 H 1.08998 * 109.46923 * 299.99608 * 12 10 9 28 28 H 1.08004 * 120.10110 * 0.02562 * 17 16 14 29 29 H 0.96704 * 114.00032 * 270.25887 * 19 18 17 30 30 H 1.07999 * 119.86404 * 179.77007 * 20 18 17 31 31 H 1.08003 * 119.90317 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4404 0.7002 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5608 -2.3703 0.0022 13 8 6.0448 -3.7392 0.0026 14 6 7.3804 -3.9158 0.0042 15 8 8.1204 -2.9523 0.0102 16 6 7.9449 -5.2802 0.0041 17 6 7.0970 -6.3895 0.0082 18 6 7.6334 -7.6651 0.0042 19 8 6.8110 -8.7475 0.0044 20 6 9.0111 -7.8408 0.0053 21 6 9.8532 -6.7450 0.0060 22 6 9.3298 -5.4664 0.0061 23 17 10.3914 -4.0928 0.0077 24 1 -0.4851 0.8399 -0.0004 25 1 3.8648 -0.3632 0.0007 26 1 5.9234 -1.8568 0.8927 27 1 5.9248 -1.8561 -0.8873 28 1 6.0257 -6.2524 0.0111 29 1 6.5723 -9.0599 0.8879 30 1 9.4261 -8.8378 0.0060 31 1 10.9236 -6.8885 0.0073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785871217.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:28 Heat of formation + Delta-G solvation = -151.541615 kcal Electronic energy + Delta-G solvation = -20767.277822 eV Core-core repulsion = 17039.848302 eV Total energy + Delta-G solvation = -3727.429520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 299.044 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.87558 -40.69229 -40.06476 -38.25728 -37.40653 -37.01689 -36.10100 -33.88660 -32.86132 -30.72206 -30.19009 -26.71839 -25.36437 -23.81148 -22.28284 -21.56474 -20.54995 -19.78750 -18.69454 -18.08288 -17.78998 -17.73745 -17.22270 -16.81171 -16.68000 -16.06031 -15.81850 -15.43727 -15.05982 -14.71426 -14.49679 -14.24205 -13.85707 -13.78712 -13.57789 -13.34479 -13.01482 -12.62619 -12.47189 -12.33444 -12.01241 -11.89747 -11.82050 -11.60370 -11.10586 -10.62758 -10.36815 -10.35538 -9.70894 -8.47322 -6.10635 -0.65344 -0.06976 0.97003 1.23711 1.28672 1.30673 1.32915 1.43932 1.73712 2.19146 2.35681 2.72484 3.06712 3.07192 3.47993 3.59304 3.85653 3.96501 4.06903 4.09787 4.11619 4.26484 4.70566 4.72006 4.90961 5.09504 5.18556 5.41828 5.45961 5.83598 6.41992 6.53698 6.75456 6.76555 7.23826 7.75340 8.69268 Molecular weight = 299.04amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.003412 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.960049 B = 8204.920923 C = 9413.187669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.232 1.232 7 C -0.334 4.334 8 H 0.061 0.939 9 N -0.575 5.575 10 C 0.449 3.551 11 O -0.608 6.608 12 C 0.069 3.931 13 O -0.340 6.340 14 C 0.499 3.501 15 O -0.499 6.499 16 C -0.119 4.119 17 C -0.089 4.089 18 C 0.104 3.896 19 O -0.501 6.501 20 C -0.081 4.081 21 C -0.095 4.095 22 C -0.003 4.003 23 Cl -0.039 7.039 24 H 0.283 0.717 25 H 0.393 0.607 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.417 0.583 30 H 0.183 0.817 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.699 -11.974 1.817 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.206 4.206 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.155 1.155 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.217 5.217 10 C 0.236 3.764 11 O -0.492 6.492 12 C -0.008 4.008 13 O -0.256 6.256 14 C 0.344 3.656 15 O -0.388 6.388 16 C -0.121 4.121 17 C -0.108 4.108 18 C 0.059 3.941 19 O -0.315 6.315 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.031 4.031 23 Cl -0.010 7.010 24 H 0.092 0.908 25 H 0.229 0.771 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.278 0.722 30 H 0.200 0.800 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 24.406 -12.082 1.231 27.261 hybrid contribution -0.536 1.332 0.460 1.508 sum 23.871 -10.750 1.691 26.234 Atomic orbital electron populations 1.69773 1.08069 1.29603 1.48992 1.26077 0.96449 1.02606 0.95517 0.85427 0.79588 0.76796 0.80180 1.17941 1.19597 1.15496 1.19009 0.80703 0.95376 1.51198 0.92070 1.41796 1.06126 1.06971 1.66762 1.20132 0.89218 0.84080 0.83003 1.90577 1.70908 1.32574 1.55170 1.22632 0.90706 0.80982 1.06437 1.86581 1.23831 1.31364 1.83813 1.21383 0.80374 0.90514 0.73364 1.90897 1.59921 1.42454 1.45576 1.18712 0.92533 0.90079 1.10783 1.21854 1.01009 0.91554 0.96423 1.18449 0.89972 0.85704 0.99960 1.84826 1.66800 1.43890 1.36017 1.22017 0.91231 1.01342 0.95328 1.21289 1.02815 0.87941 0.99295 1.21233 0.88887 0.91094 1.01864 1.98423 1.63691 1.42746 1.96122 0.90774 0.77067 0.86411 0.86439 0.84341 0.72233 0.79979 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 13.96 21.66 0.30 -54.44 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.96 38.07 27.74 68.60 1.90 39.98 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 7 C -0.33 -19.40 10.16 84.04 0.85 -18.55 16 8 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 9 N -0.57 -27.19 5.09 -306.98 -1.56 -28.76 16 10 C 0.45 20.93 7.86 87.66 0.69 21.62 16 11 O -0.61 -34.62 16.08 15.73 0.25 -34.37 16 12 C 0.07 2.40 5.95 71.24 0.42 2.82 16 13 O -0.34 -12.24 9.01 -49.95 -0.45 -12.69 16 14 C 0.50 15.62 7.89 70.31 0.55 16.18 16 15 O -0.50 -16.21 13.75 19.89 0.27 -15.94 16 16 C -0.12 -3.04 5.87 -20.09 -0.12 -3.16 16 17 C -0.09 -2.09 9.55 22.64 0.22 -1.87 16 18 C 0.10 1.74 6.70 22.46 0.15 1.89 16 19 O -0.50 -7.40 13.50 -92.80 -1.25 -8.66 16 20 C -0.08 -0.89 9.98 22.42 0.22 -0.66 16 21 C -0.10 -1.20 9.81 22.24 0.22 -0.98 16 22 C 0.00 -0.07 6.35 22.61 0.14 0.07 16 23 Cl -0.04 -0.88 26.01 -2.72 -0.07 -0.95 16 24 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.39 15.28 5.76 -92.71 -0.53 14.75 16 26 H 0.12 3.44 8.13 -2.39 -0.02 3.42 16 27 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.14 3.77 7.61 -2.91 -0.02 3.75 16 29 H 0.42 2.07 9.06 -74.05 -0.67 1.40 16 30 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 31 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -80.35 302.01 3.18 -77.17 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.04 Total: 21.17 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 3.82 Total: 17.48 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -1.26 Total: -83.20 kcal Atomic # 8 Polarization: -70.48 SS G_CDS: -1.18 Total: -71.65 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.98 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.95 kcal Total: -80.35 3.18 -77.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785871217.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.370 kcal (2) G-P(sol) polarization free energy of solvation -80.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds