Wall clock time and date at job start Tue Mar 31 2020 04:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46908 * 2 1 4 4 C 1.52995 * 109.47171 * 240.00321 * 2 1 3 5 5 C 1.50695 * 109.47689 * 64.99991 * 4 2 1 6 6 H 1.08006 * 119.99388 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00452 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99785 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00303 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47121 * 89.99537 * 9 7 5 11 11 H 1.48492 * 109.47180 * 210.00094 * 9 7 5 12 12 H 1.48501 * 109.46832 * 330.00039 * 9 7 5 13 13 C 1.53003 * 109.46961 * 119.99838 * 2 1 3 14 14 N 1.46901 * 109.46955 * 181.81990 * 13 2 1 15 15 C 1.46846 * 111.00146 * 52.09128 * 14 13 2 16 16 C 1.53037 * 109.52276 * 185.84188 * 15 14 13 17 17 C 1.53124 * 109.27574 * 300.81631 * 16 15 14 18 18 C 1.50696 * 109.57392 * 177.59604 * 17 16 15 19 19 O 1.21288 * 119.99859 * 240.28599 * 18 17 16 20 20 N 1.34777 * 120.00098 * 60.28284 * 18 17 16 21 21 C 1.46503 * 119.99540 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.46832 * 179.97438 * 21 20 18 23 23 O 1.42901 * 109.46999 * 65.00138 * 22 21 20 24 24 C 1.53114 * 109.15944 * 57.65382 * 17 16 15 25 25 C 1.46848 * 110.99899 * 176.29777 * 14 13 2 26 26 H 1.08997 * 109.47187 * 294.56388 * 1 2 3 27 27 H 1.09003 * 109.46933 * 54.56245 * 1 2 3 28 28 H 1.08998 * 109.47038 * 174.56047 * 1 2 3 29 29 H 1.09003 * 109.47262 * 185.00178 * 4 2 1 30 30 H 1.09003 * 109.46891 * 304.99586 * 4 2 1 31 31 H 0.97002 * 120.00472 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46733 * 61.82460 * 13 2 1 33 33 H 1.09004 * 109.47277 * 301.82121 * 13 2 1 34 34 H 1.09004 * 109.45668 * 305.85052 * 15 14 13 35 35 H 1.09000 * 109.46477 * 65.82122 * 15 14 13 36 36 H 1.08999 * 109.50355 * 180.88079 * 16 15 14 37 37 H 1.08996 * 109.53907 * 60.77954 * 16 15 14 38 38 H 1.09007 * 109.51971 * 297.75313 * 17 16 15 39 39 H 0.96991 * 120.00331 * 0.02562 * 20 18 17 40 40 H 1.08998 * 109.47718 * 299.99904 * 21 20 18 41 41 H 1.09004 * 109.47187 * 60.00331 * 21 20 18 42 42 H 1.08999 * 109.47504 * 184.99878 * 22 21 20 43 43 H 1.09005 * 109.47451 * 305.00047 * 22 21 20 44 44 H 0.96705 * 114.00332 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.50478 * 182.40131 * 24 17 16 46 46 H 1.09008 * 109.53401 * 62.31319 * 24 17 16 47 47 H 1.08992 * 109.46232 * 294.17672 * 25 14 13 48 48 H 1.09000 * 109.46164 * 54.15528 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0807 0.9747 -2.3756 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5192 -3.8512 9 14 1.4989 0.5629 -5.2497 10 1 2.5650 1.5418 -5.5823 11 1 1.3111 -0.3708 -6.3889 12 1 0.2283 1.2852 -4.9870 13 6 2.0400 -0.7212 1.2493 14 7 3.5083 -0.6833 1.2715 15 6 4.0019 0.6897 1.1049 16 6 5.5276 0.6740 0.9870 17 6 6.1257 0.0464 2.2492 18 6 7.6249 -0.0265 2.1151 19 8 8.1860 -1.1010 2.1565 20 7 8.3422 1.1024 1.9490 21 6 9.7998 1.0315 1.8192 22 6 10.3651 2.4421 1.6419 23 8 10.1277 3.2030 2.8280 24 6 5.5585 -1.3648 2.4259 25 6 4.0319 -1.2900 2.5020 26 1 -0.3633 0.4272 0.9346 27 1 -0.3633 0.5959 -0.8373 28 1 -0.3633 -1.0230 -0.0974 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7197 -1.2951 31 1 2.9229 -1.8422 -4.7317 32 1 1.7035 -1.7579 1.2330 33 1 1.6502 -0.2266 2.1390 34 1 3.5723 1.1229 0.2016 35 1 3.7104 1.2877 1.9684 36 1 5.8948 1.6945 0.8791 37 1 5.8198 0.0880 0.1157 38 1 5.8666 0.6543 3.1161 39 1 7.8936 1.9617 1.9162 40 1 10.2231 0.5802 2.7165 41 1 10.0582 0.4252 0.9510 42 1 11.4376 2.3832 1.4567 43 1 9.8764 2.9258 0.7961 44 1 10.4609 4.1099 2.7869 45 1 5.9478 -1.8010 3.3458 46 1 5.8507 -1.9840 1.5776 47 1 3.7403 -0.6828 3.3589 48 1 3.6243 -2.2948 2.6134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876578272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:32 Heat of formation + Delta-G solvation = -132.931340 kcal Electronic energy + Delta-G solvation = -25062.026695 eV Core-core repulsion = 21535.746052 eV Total energy + Delta-G solvation = -3526.280643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28623 -39.70722 -38.05351 -36.91124 -35.46977 -34.66221 -33.28317 -31.73553 -30.29040 -29.01599 -27.47151 -25.49136 -24.28784 -24.08026 -23.22166 -21.81885 -20.66180 -20.17206 -18.51480 -18.45107 -18.22438 -17.38071 -16.72117 -16.56525 -16.26598 -15.84291 -15.57296 -15.31760 -15.16874 -14.92321 -14.55453 -14.31824 -14.13170 -14.07030 -13.63452 -13.48678 -13.38219 -13.16306 -12.95091 -12.76281 -12.61030 -12.37676 -12.30497 -12.21802 -12.09266 -11.94829 -11.60727 -11.57854 -11.22556 -11.07438 -10.87798 -10.80545 -10.61573 -10.44577 -10.12421 -8.98559 -8.08600 -6.17550 1.41235 1.42333 1.52831 1.60287 2.20172 2.46235 3.07637 3.24371 3.31940 3.62852 3.79410 3.86987 4.04215 4.12120 4.21634 4.27726 4.31387 4.36653 4.48331 4.51483 4.55306 4.58790 4.66213 4.76343 4.79453 4.83645 4.85898 4.88896 4.92699 5.01554 5.04526 5.18830 5.21625 5.34506 5.37179 5.45649 5.49519 5.54234 5.70090 5.97273 6.06818 6.33166 6.37839 6.42899 6.51714 6.89617 7.02367 7.22777 7.49973 9.02719 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.003521 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.410564 B = 7950.552099 C = 9079.461417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 H 0.063 0.937 4 C 0.048 3.952 5 C -0.526 4.526 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.074 3.926 14 N -0.557 5.557 15 C 0.057 3.943 16 C -0.097 4.097 17 C -0.096 4.096 18 C 0.516 3.484 19 O -0.586 6.586 20 N -0.714 5.714 21 C 0.111 3.889 22 C 0.072 3.928 23 O -0.592 6.592 24 C -0.091 4.091 25 C 0.062 3.938 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.002 0.998 30 H -0.027 1.027 31 H 0.258 0.742 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.122 0.878 39 H 0.415 0.585 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.401 0.599 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.007 11.850 15.531 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 H 0.081 0.919 4 C 0.010 3.990 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.187 1.187 13 C -0.053 4.053 14 N -0.282 5.282 15 C -0.071 4.071 16 C -0.136 4.136 17 C -0.117 4.117 18 C 0.304 3.696 19 O -0.467 6.467 20 N -0.367 5.367 21 C -0.013 4.013 22 C -0.006 4.006 23 O -0.401 6.401 24 C -0.129 4.129 25 C -0.065 4.065 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.021 0.979 30 H -0.008 1.008 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.140 0.860 39 H 0.252 0.748 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.252 0.748 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.400 10.170 15.234 21.575 hybrid contribution -0.237 1.026 -0.890 1.379 sum 11.163 11.196 14.344 21.348 Atomic orbital electron populations 1.21620 0.95058 1.00855 1.00909 1.21215 0.95637 0.98860 0.94479 0.91913 1.18844 0.95274 0.93194 0.91640 1.21744 1.33903 1.08368 0.92405 0.92303 1.25907 0.95519 0.96019 1.02472 1.70141 1.40584 1.23051 1.23829 0.85604 0.78998 0.78428 0.78951 1.19955 1.21400 1.18701 1.22052 0.86456 1.00148 0.96691 1.61758 1.08973 1.20160 1.37352 1.22098 0.94579 0.88984 1.01411 1.21507 0.95075 1.01249 0.95737 1.21358 0.89606 0.99591 1.01186 1.21009 0.90376 0.83580 0.74653 1.90670 1.73598 1.30322 1.52064 1.45879 1.07739 1.09525 1.73510 1.21503 0.80071 0.97696 1.01988 1.22374 1.00750 0.89782 0.87676 1.86467 1.84367 1.30244 1.39008 1.21313 0.94405 0.95167 1.02040 1.22053 0.94330 0.99897 0.90250 0.91561 0.93606 0.94284 0.97918 1.00827 0.93330 0.92365 0.93588 0.91125 0.92937 0.88568 0.93789 0.86010 0.74824 0.92395 0.90605 0.89976 0.91298 0.74811 0.90517 0.93657 0.93056 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.91 71.98 0.64 -3.90 16 2 C -0.08 -3.30 1.85 -10.79 -0.02 -3.32 16 3 H 0.06 2.43 6.08 -2.38 -0.01 2.41 16 4 C 0.05 2.51 4.30 29.84 0.13 2.64 16 5 C -0.53 -29.70 8.48 25.60 0.22 -29.49 16 6 H 0.06 3.17 7.06 -2.91 -0.02 3.15 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 8 N -0.93 -58.61 13.29 21.45 0.28 -58.33 16 9 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.07 2.47 4.55 86.30 0.39 2.86 16 14 N -0.56 -18.51 3.99 -896.36 -3.58 -22.09 16 15 C 0.06 1.66 4.99 86.33 0.43 2.09 16 16 C -0.10 -2.55 5.26 30.65 0.16 -2.39 16 17 C -0.10 -2.31 2.59 -11.46 -0.03 -2.34 16 18 C 0.52 14.00 7.16 87.66 0.63 14.62 16 19 O -0.59 -21.00 15.98 -3.05 -0.05 -21.05 16 20 N -0.71 -14.39 5.41 -463.05 -2.51 -16.90 16 21 C 0.11 2.02 6.06 86.38 0.52 2.55 16 22 C 0.07 0.75 7.18 71.98 0.52 1.27 16 23 O -0.59 -6.83 13.60 -148.98 -2.03 -8.86 16 24 C -0.09 -2.55 4.68 30.64 0.14 -2.41 16 25 C 0.06 1.69 5.46 86.32 0.47 2.16 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.76 7.12 -2.39 -0.02 1.74 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.00 0.14 7.46 -2.39 -0.02 0.12 16 30 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 2.45 5.74 -2.39 -0.01 2.43 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.88 7.67 -2.39 -0.02 1.86 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.41 6.26 7.96 -92.72 -0.74 5.52 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.40 0.91 9.12 -74.05 -0.68 0.23 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.59 8.04 -2.38 -0.02 1.57 16 47 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 Total: -1.00 -77.19 376.71 -1.66 -78.85 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.48 Total: 16.81 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.67 Total: -15.33 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -5.80 Total: -97.31 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -2.08 Total: -29.90 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -77.19 -1.66 -78.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876578272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.083 kcal (2) G-P(sol) polarization free energy of solvation -77.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds