Wall clock time and date at job start Tue Mar 31 2020 04:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47355 * 240.00001 * 2 1 3 5 5 C 1.52995 * 109.47054 * 174.99802 * 4 2 1 6 6 C 1.53008 * 109.46841 * 180.02562 * 5 4 2 7 7 N 1.46906 * 109.47142 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47383 * 119.99719 * 2 1 3 9 9 C 1.34776 * 120.00057 * 275.00462 * 8 2 1 10 10 O 1.21582 * 119.99827 * 4.96546 * 9 8 2 11 11 N 1.34775 * 119.99758 * 184.96949 * 9 8 2 12 12 C 1.47085 * 120.88220 * 354.79912 * 11 9 8 13 13 C 1.53240 * 108.51807 * 231.16207 * 12 11 9 14 14 N 1.46893 * 109.34110 * 306.17179 * 13 12 11 15 15 C 1.46904 * 111.00050 * 187.25679 * 14 13 12 16 16 C 1.50700 * 109.47522 * 170.00099 * 15 14 13 17 17 H 1.07997 * 119.99797 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00016 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00009 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00187 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47205 * 90.00057 * 20 18 16 22 22 H 1.48504 * 109.46990 * 209.99806 * 20 18 16 23 23 H 1.48500 * 109.46884 * 329.99981 * 20 18 16 24 24 C 1.46897 * 111.27283 * 63.10860 * 14 13 12 25 25 C 1.47084 * 120.87908 * 174.77500 * 11 9 8 26 26 H 1.08992 * 109.47352 * 60.00485 * 1 2 3 27 27 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47147 * 299.99497 * 1 2 3 29 29 H 1.08999 * 109.47403 * 294.99998 * 4 2 1 30 30 H 1.09002 * 109.46990 * 54.99883 * 4 2 1 31 31 H 1.09002 * 109.47302 * 299.99577 * 5 4 2 32 32 H 1.08997 * 109.47579 * 60.00014 * 5 4 2 33 33 H 1.08994 * 109.47126 * 299.99830 * 6 5 4 34 34 H 1.09002 * 109.47115 * 60.00135 * 6 5 4 35 35 H 1.00892 * 111.00183 * 180.02562 * 7 6 5 36 36 H 1.00905 * 110.99897 * 303.95476 * 7 6 5 37 37 H 0.96994 * 119.99690 * 95.00210 * 8 2 1 38 38 H 1.08996 * 109.62434 * 111.45401 * 12 11 9 39 39 H 1.08997 * 109.62703 * 350.86852 * 12 11 9 40 40 H 1.08999 * 109.49450 * 186.20765 * 13 12 11 41 41 H 1.09004 * 109.49371 * 66.13471 * 13 12 11 42 42 H 1.09000 * 109.46811 * 289.99908 * 15 14 13 43 43 H 1.09001 * 109.47246 * 49.99120 * 15 14 13 44 44 H 0.96995 * 120.00570 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.49471 * 56.85177 * 24 14 13 46 46 H 1.08997 * 109.49632 * 176.93996 * 24 14 13 47 47 H 1.08998 * 109.62553 * 9.13120 * 25 11 9 48 48 H 1.08998 * 109.62754 * 248.54628 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0748 -1.3339 -2.5633 7 7 5.5389 -1.2308 -2.6248 8 7 2.0184 -0.6906 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.7735 1.1362 2.4357 11 7 2.6899 -0.6254 3.4310 12 6 3.0439 -2.0525 3.3925 13 6 2.4225 -2.7411 4.6123 14 7 2.8317 -2.0323 5.8321 15 6 2.3997 -2.7591 7.0334 16 6 3.0402 -2.1434 8.2507 17 1 3.7024 -1.2971 8.1426 18 6 2.7809 -2.6606 9.5021 19 7 3.3404 -2.1236 10.5644 20 14 1.6351 -4.1240 9.6890 21 1 2.4204 -5.3815 9.6048 22 1 0.9532 -4.0536 11.0064 23 1 0.6209 -4.1001 8.6046 24 6 2.3269 -0.6528 5.8416 25 6 2.9445 0.1215 4.6722 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.8531 0.4371 -1.3574 32 1 3.9995 -1.0726 -0.4259 33 1 3.7865 -2.3842 -2.5200 34 1 3.6401 -0.8740 -3.4508 35 1 5.9003 -1.6990 -3.4422 36 1 5.8348 -0.2664 -2.6005 37 1 2.2491 -1.6316 1.1526 38 1 4.1279 -2.1617 3.4230 39 1 2.6532 -2.5022 2.4797 40 1 2.7649 -3.7749 4.6601 41 1 1.3360 -2.7211 4.5271 42 1 1.3151 -2.6991 7.1240 43 1 2.7003 -3.8038 6.9537 44 1 3.1583 -2.4875 11.4448 45 1 1.2418 -0.6618 5.7392 46 1 2.6002 -0.1719 6.7808 47 1 2.4881 1.1091 4.6053 48 1 4.0190 0.2212 4.8257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892139917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:16 Heat of formation + Delta-G solvation = -24.596096 kcal Electronic energy + Delta-G solvation = -24986.374713 eV Core-core repulsion = 21497.084591 eV Total energy + Delta-G solvation = -3489.290123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33886 -38.11537 -36.96911 -35.17838 -34.45691 -32.46344 -31.94441 -30.66690 -29.90902 -28.46382 -25.72670 -25.33579 -23.38298 -22.18211 -21.70223 -21.24454 -20.47665 -19.37940 -17.91289 -16.83709 -16.59261 -16.23525 -15.53752 -15.32723 -15.16501 -14.57893 -14.54972 -14.31661 -14.13914 -13.84890 -13.68603 -13.47030 -13.34744 -12.94376 -12.72536 -12.47943 -12.36901 -12.07873 -11.74721 -11.60727 -11.38954 -11.23512 -11.19771 -10.93501 -10.90318 -10.75008 -10.53588 -10.34034 -9.96405 -9.85782 -9.32469 -9.15076 -9.10918 -8.59356 -8.34516 -7.44219 -6.07445 -4.05341 2.73977 3.26407 3.33006 3.34346 3.35629 3.91611 4.04047 4.39622 4.43214 4.61733 4.62797 4.82136 4.93919 5.05948 5.14676 5.22237 5.22678 5.27447 5.31758 5.39060 5.42130 5.44773 5.55444 5.62876 5.72770 5.78670 5.84848 5.95380 5.95600 6.00706 6.09223 6.11663 6.39535 6.52610 6.54289 6.63905 6.69985 6.82925 6.94728 6.99390 7.08495 7.54023 7.81486 7.96778 8.05249 8.61547 8.71537 9.00534 9.53837 11.05489 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.002904 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.995205 B = 9641.194346 C = 9960.470705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.162 3.838 3 H 0.086 0.914 4 C -0.125 4.125 5 C -0.119 4.119 6 C 0.061 3.939 7 N -0.853 5.853 8 N -0.744 5.744 9 C 0.708 3.292 10 O -0.596 6.596 11 N -0.626 5.626 12 C 0.120 3.880 13 C 0.038 3.962 14 N -0.526 5.526 15 C 0.163 3.837 16 C -0.511 4.511 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.050 3.950 25 C 0.133 3.867 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.341 0.659 36 H 0.341 0.659 37 H 0.393 0.607 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.026 0.974 42 H -0.012 1.012 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.025 0.975 46 H 0.102 0.898 47 H 0.090 0.910 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 0.416 -27.079 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 H 0.104 0.896 4 C -0.164 4.164 5 C -0.157 4.157 6 C -0.070 4.070 7 N -0.382 5.382 8 N -0.402 5.402 9 C 0.410 3.590 10 O -0.475 6.475 11 N -0.363 5.363 12 C -0.004 4.004 13 C -0.092 4.092 14 N -0.250 5.250 15 C 0.037 3.963 16 C -0.549 4.549 17 H 0.100 0.900 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.079 4.079 25 C 0.010 3.990 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.230 0.770 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.006 0.994 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.121 0.879 47 H 0.108 0.892 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.591 0.874 -26.127 26.190 hybrid contribution -1.566 -0.990 -0.636 1.959 sum -3.157 -0.116 -26.763 26.949 Atomic orbital electron populations 1.22205 0.95598 1.01947 1.02560 1.20751 0.93641 0.97133 0.82825 0.89624 1.21866 0.95727 1.01285 0.97493 1.21587 0.94820 1.00801 0.98503 1.21825 0.87769 1.00723 0.96693 1.58696 1.10373 1.20983 1.48182 1.45378 1.72280 1.13612 1.08955 1.15837 0.78382 0.84566 0.80256 1.90880 1.56095 1.16793 1.83699 1.47412 1.65224 1.10569 1.13101 1.21721 1.00769 0.80339 0.97562 1.22430 0.97214 0.98282 0.91247 1.61895 1.59680 1.01815 1.01632 1.20173 0.93741 0.94107 0.88296 1.21013 1.28309 1.16968 0.88626 0.90001 1.24896 0.95739 0.96806 0.95842 1.69889 1.43936 1.41484 0.98446 0.86867 0.81649 0.83614 0.77632 1.20133 1.21195 1.19369 1.22405 0.96195 0.90359 0.98925 1.21729 1.00859 0.95339 0.81039 0.91967 0.92712 0.91712 0.91291 0.90463 0.92013 0.90729 0.91093 0.95747 0.84718 0.84700 0.77024 0.90516 0.91235 0.90131 0.95544 0.99409 0.95693 0.92618 0.95727 0.87950 0.89178 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.16 1.52 2.54 -67.93 -0.17 1.35 16 3 H 0.09 0.97 7.65 -51.93 -0.40 0.57 16 4 C -0.13 -0.80 4.75 -26.73 -0.13 -0.93 16 5 C -0.12 -0.86 5.36 -26.73 -0.14 -1.00 16 6 C 0.06 0.38 6.79 -3.82 -0.03 0.36 16 7 N -0.85 -5.65 9.62 -10.36 -0.10 -5.75 16 8 N -0.74 -8.20 4.44 -58.68 -0.26 -8.46 16 9 C 0.71 10.78 8.27 -86.92 -0.72 10.06 16 10 O -0.60 -11.15 15.47 5.29 0.08 -11.07 16 11 N -0.63 -9.48 3.01 -178.19 -0.54 -10.01 16 12 C 0.12 1.56 6.54 -3.60 -0.02 1.53 16 13 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 14 N -0.53 -10.62 4.62 -235.76 -1.09 -11.71 16 15 C 0.16 3.86 3.79 -4.97 -0.02 3.84 16 16 C -0.51 -14.23 8.96 -34.44 -0.31 -14.54 16 17 H 0.08 2.47 7.37 -52.49 -0.39 2.08 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 20 Si 0.88 21.26 27.47 -169.99 -4.67 16.60 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 C 0.05 0.97 5.46 -3.70 -0.02 0.95 16 25 C 0.13 2.23 6.61 -3.60 -0.02 2.21 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.34 1.70 9.08 -39.30 -0.36 1.34 16 36 H 0.34 1.99 8.99 -39.29 -0.35 1.64 16 37 H 0.39 3.56 6.14 -40.82 -0.25 3.31 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.68 5.74 -51.93 -0.30 0.38 16 40 H 0.08 1.19 7.99 -51.93 -0.41 0.77 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 43 H 0.03 0.59 7.40 -51.93 -0.38 0.20 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 2.17 6.67 -51.93 -0.35 1.83 16 47 H 0.09 1.54 7.04 -51.93 -0.37 1.17 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -33.03 373.96 -10.08 -43.11 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.57 Total: 3.02 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.35 Total: 5.11 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -1.21 Total: -62.41 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.03 -10.08 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892139917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.518 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds