Wall clock time and date at job start Tue Mar 31 2020 03:43:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52999 * 109.47153 * 2 1
4 4 H 1.08997 * 109.52332 * 305.08135 * 3 2 1
5 5 C 1.53161 * 109.47865 * 65.15619 * 3 2 1
6 6 N 1.46932 * 108.76845 * 174.59711 * 5 3 2
7 7 C 1.34777 * 120.63253 * 126.41168 * 6 5 3
8 8 O 1.21282 * 119.99865 * 359.97438 * 7 6 5
9 9 C 1.50697 * 119.99896 * 179.97438 * 7 6 5
10 10 C 1.52998 * 109.47264 * 186.08672 * 9 7 6
11 11 C 1.53000 * 109.46853 * 62.74452 * 10 9 7
12 12 C 1.52993 * 109.47257 * 182.74675 * 10 9 7
13 13 O 1.42902 * 109.46996 * 302.74906 * 10 9 7
14 14 C 1.46930 * 118.73620 * 306.38745 * 6 5 3
15 15 C 1.53193 * 108.77443 * 53.60801 * 14 6 5
16 16 C 1.53040 * 109.49849 * 184.99772 * 3 2 1
17 17 H 1.09009 * 109.45868 * 58.68042 * 16 3 2
18 18 N 1.46499 * 109.46275 * 298.70422 * 16 3 2
19 19 C 1.36941 * 119.99880 * 154.97125 * 18 16 3
20 20 H 1.07998 * 119.99750 * 359.97438 * 19 18 16
21 21 C 1.38808 * 119.99686 * 180.02562 * 19 18 16
22 22 N 1.31622 * 120.00266 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 120.00078 * 180.02562 * 21 19 18
24 24 H 1.48493 * 109.47237 * 179.97438 * 23 21 19
25 25 H 1.48506 * 109.46783 * 299.99688 * 23 21 19
26 26 H 1.48499 * 109.47276 * 59.99264 * 23 21 19
27 27 H 1.09004 * 109.47376 * 60.00107 * 1 2 3
28 28 H 1.09000 * 109.47029 * 180.02562 * 1 2 3
29 29 H 1.09002 * 109.47484 * 299.99875 * 1 2 3
30 30 H 1.09002 * 109.47484 * 240.00124 * 2 1 3
31 31 H 1.09004 * 109.47376 * 119.99893 * 2 1 3
32 32 H 1.08997 * 109.59332 * 54.80925 * 5 3 2
33 33 H 1.08999 * 109.70812 * 294.44526 * 5 3 2
34 34 H 1.09005 * 109.46959 * 306.09100 * 9 7 6
35 35 H 1.09001 * 109.47253 * 66.08506 * 9 7 6
36 36 H 1.09006 * 109.47154 * 60.00537 * 11 10 9
37 37 H 1.09002 * 109.46909 * 179.97438 * 11 10 9
38 38 H 1.08998 * 109.47505 * 300.00359 * 11 10 9
39 39 H 1.08998 * 109.47617 * 60.23783 * 12 10 9
40 40 H 1.09001 * 109.46886 * 180.23761 * 12 10 9
41 41 H 1.08996 * 109.47249 * 300.23484 * 12 10 9
42 42 H 0.96700 * 113.99909 * 180.02562 * 13 10 9
43 43 H 1.09003 * 109.58459 * 293.82518 * 14 6 5
44 44 H 1.08996 * 109.58509 * 173.39731 * 14 6 5
45 45 H 1.08996 * 109.49682 * 185.41239 * 15 14 6
46 46 H 1.09000 * 109.52431 * 65.33295 * 15 14 6
47 47 H 0.97000 * 119.99957 * 334.97243 * 18 16 3
48 48 H 0.97000 * 119.99870 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6047 1.9827 -0.8407
5 6 1.6382 2.1262 1.3103
6 7 2.2445 3.4640 1.3507
7 6 1.4849 4.5559 1.5682
8 8 0.2889 4.4397 1.7324
9 6 2.1218 5.9212 1.6073
10 6 1.0761 6.9602 2.0169
11 6 0.5777 6.6523 3.4303
12 6 1.7050 8.3546 1.9903
13 8 -0.0226 6.9156 1.1042
14 6 3.6947 3.5887 1.1500
15 6 4.0734 2.8882 -0.1587
16 6 3.5652 1.4450 -0.1257
17 1 3.8546 0.9371 -1.0457
18 7 4.1507 0.7475 1.0219
19 6 5.3883 0.1713 0.9143
20 1 5.9325 0.2308 -0.0167
21 6 5.9428 -0.4900 2.0014
22 7 5.2793 -0.5628 3.1359
23 14 7.6313 -1.2754 1.8550
24 1 7.9942 -1.9133 3.1459
25 1 7.6078 -2.3034 0.7836
26 1 8.6345 -0.2333 1.5191
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3634 0.5138 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 1.9962 1.5372 2.1547
33 1 0.5530 2.2153 1.3608
34 1 2.9370 5.9212 2.3309
35 1 2.5123 6.1684 0.6201
36 1 1.4157 6.6863 4.1266
37 1 -0.1670 7.3928 3.7223
38 1 0.1297 5.6588 3.4493
39 1 2.0563 8.5757 0.9825
40 1 0.9611 9.0944 2.2862
41 1 2.5456 8.3874 2.6834
42 1 -0.7251 7.5497 1.3031
43 1 4.2203 3.1189 1.9813
44 1 3.9662 4.6428 1.0922
45 1 5.1574 2.8897 -0.2716
46 1 3.6194 3.4147 -0.9982
47 1 3.6617 0.6938 1.8579
48 1 5.6670 -1.0247 3.8957
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001037831022.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:43:55
Heat of formation + Delta-G solvation = -89.176414 kcal
Electronic energy + Delta-G solvation = -26246.645800 eV
Core-core repulsion = 22722.262513 eV
Total energy + Delta-G solvation = -3524.383287 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 298.204 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.16678 -38.48388 -37.01640 -34.33081 -33.71968 -32.67944 -31.64112 -29.51158
-29.08599 -27.72870 -27.38491 -24.67196 -23.73534 -23.43066 -20.89485 -20.69709
-19.29098 -18.09710 -17.35905 -16.91760 -16.40772 -15.73787 -15.31140 -14.85914
-14.53967 -14.24948 -13.98659 -13.88842 -13.49248 -13.33056 -13.21871 -13.13932
-12.80818 -12.54720 -12.27796 -12.14254 -11.99407 -11.85041 -11.67038 -11.52308
-11.21969 -11.04634 -10.99149 -10.85537 -10.76968 -10.59378 -10.25425 -10.22252
-10.16150 -10.01563 -9.73923 -9.51778 -9.22482 -8.90242 -8.08119 -6.96309
-5.78346 -3.06552 3.02217 3.38964 3.41831 3.47237 3.47769 4.17106
4.57863 4.63544 4.66025 4.90163 5.08621 5.22542 5.33487 5.35589
5.40189 5.44465 5.49238 5.54950 5.59881 5.61755 5.68417 5.73872
5.76308 5.85692 5.88311 5.91469 5.96550 6.00016 6.14942 6.20757
6.25414 6.35898 6.41339 6.45201 6.45999 6.61498 6.70361 6.75565
6.83145 6.99314 7.09262 7.68579 7.71475 7.87883 8.40314 8.60465
9.51848 10.09215 10.44523 11.44005
Molecular weight = 298.20amu
Principal moments of inertia in cm(-1)
A = 0.017195 B = 0.004277 C = 0.003762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1627.997923 B = 6544.519760 C = 7442.018054
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.110 4.110
3 C -0.103 4.103
4 H 0.065 0.935
5 C 0.120 3.880
6 N -0.606 5.606
7 C 0.515 3.485
8 O -0.533 6.533
9 C -0.129 4.129
10 C 0.143 3.857
11 C -0.185 4.185
12 C -0.179 4.179
13 O -0.543 6.543
14 C 0.114 3.886
15 C -0.150 4.150
16 C 0.179 3.821
17 H 0.050 0.950
18 N -0.718 5.718
19 C -0.237 4.237
20 H 0.069 0.931
21 C -0.011 4.011
22 N -0.933 5.933
23 Si 0.904 3.096
24 H -0.292 1.292
25 H -0.287 1.287
26 H -0.287 1.287
27 H 0.047 0.953
28 H 0.049 0.951
29 H 0.053 0.947
30 H 0.060 0.940
31 H 0.076 0.924
32 H 0.071 0.929
33 H 0.085 0.915
34 H 0.101 0.899
35 H 0.096 0.904
36 H 0.058 0.942
37 H 0.053 0.947
38 H 0.084 0.916
39 H 0.063 0.937
40 H 0.059 0.941
41 H 0.066 0.934
42 H 0.369 0.631
43 H 0.083 0.917
44 H 0.067 0.933
45 H 0.073 0.927
46 H 0.048 0.952
47 H 0.384 0.616
48 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.639 14.290 -3.284 16.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.148 4.148
3 C -0.123 4.123
4 H 0.083 0.917
5 C -0.002 4.002
6 N -0.339 5.339
7 C 0.302 3.698
8 O -0.410 6.410
9 C -0.168 4.168
10 C 0.102 3.898
11 C -0.242 4.242
12 C -0.236 4.236
13 O -0.347 6.347
14 C -0.009 4.009
15 C -0.191 4.191
16 C 0.068 3.932
17 H 0.068 0.932
18 N -0.361 5.361
19 C -0.368 4.368
20 H 0.086 0.914
21 C -0.207 4.207
22 N -0.581 5.581
23 Si 0.735 3.265
24 H -0.218 1.218
25 H -0.214 1.214
26 H -0.214 1.214
27 H 0.066 0.934
28 H 0.068 0.932
29 H 0.072 0.928
30 H 0.079 0.921
31 H 0.094 0.906
32 H 0.089 0.911
33 H 0.103 0.897
34 H 0.119 0.881
35 H 0.114 0.886
36 H 0.077 0.923
37 H 0.072 0.928
38 H 0.103 0.897
39 H 0.082 0.918
40 H 0.078 0.922
41 H 0.085 0.915
42 H 0.215 0.785
43 H 0.101 0.899
44 H 0.086 0.914
45 H 0.091 0.909
46 H 0.066 0.934
47 H 0.219 0.781
48 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -7.734 13.667 -3.489 16.086
hybrid contribution 0.815 0.020 0.493 0.953
sum -6.919 13.687 -2.996 15.626
Atomic orbital electron populations
1.21848 0.96839 1.00939 1.01375 1.21414 0.94262 0.95842 1.03263
1.21730 0.97269 0.96055 0.97213 0.91675 1.21617 0.98734 0.81851
0.97989 1.48162 1.08534 1.06597 1.70641 1.20327 0.87014 0.85697
0.76712 1.90639 1.14585 1.86251 1.49559 1.21763 0.98416 0.92449
1.04219 1.20819 0.86742 0.92882 0.89358 1.22617 1.01503 1.04258
0.95838 1.22522 1.01653 0.96718 1.02739 1.86693 1.31348 1.63234
1.53448 1.21702 0.79507 0.99791 0.99864 1.22517 1.01659 0.99334
0.95597 1.20217 0.89820 0.90610 0.92531 0.93246 1.42469 1.19040
1.63953 1.10598 1.19179 0.93663 1.26979 0.97027 0.91350 1.24687
0.98503 1.01487 0.96031 1.69641 1.38160 1.48071 1.02236 0.86323
0.84412 0.79199 0.76547 1.21830 1.21391 1.21407 0.93398 0.93232
0.92789 0.92127 0.90552 0.91065 0.89720 0.88105 0.88560 0.92312
0.92802 0.89704 0.91815 0.92199 0.91534 0.78528 0.89852 0.91437
0.90871 0.93369 0.78085 0.93516
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.17 9.67 37.15 0.36 -1.81 16
2 C -0.11 -1.81 5.19 -26.73 -0.14 -1.95 16
3 C -0.10 -1.73 2.14 -90.52 -0.19 -1.92 16
4 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
5 C 0.12 2.10 5.03 -3.72 -0.02 2.08 16
6 N -0.61 -9.99 2.97 -172.78 -0.51 -10.50 16
7 C 0.51 8.36 7.18 -10.99 -0.08 8.28 16
8 O -0.53 -10.09 12.61 -15.09 -0.19 -10.28 16
9 C -0.13 -1.59 3.34 -27.89 -0.09 -1.68 16
10 C 0.14 1.61 0.98 -90.62 -0.09 1.53 16
11 C -0.18 -2.10 8.53 37.16 0.32 -1.79 16
12 C -0.18 -1.49 8.81 37.15 0.33 -1.16 16
13 O -0.54 -6.99 11.54 -55.88 -0.64 -7.63 16
14 C 0.11 1.80 6.04 -3.71 -0.02 1.78 16
15 C -0.15 -2.48 5.78 -26.61 -0.15 -2.64 16
16 C 0.18 3.35 2.53 -67.89 -0.17 3.18 16
17 H 0.05 0.96 8.08 -51.92 -0.42 0.55 16
18 N -0.72 -16.46 3.72 -53.38 -0.20 -16.66 16
19 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16
20 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16
21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16
22 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16
23 Si 0.90 21.69 29.55 -169.99 -5.02 16.66 16
24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
29 H 0.05 0.78 6.70 -51.93 -0.35 0.43 16
30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
31 H 0.08 1.45 7.70 -51.93 -0.40 1.05 16
32 H 0.07 1.38 6.64 -51.93 -0.34 1.03 16
33 H 0.08 1.51 5.73 -51.93 -0.30 1.21 16
34 H 0.10 1.07 7.63 -51.93 -0.40 0.68 16
35 H 0.10 1.11 7.96 -51.93 -0.41 0.70 16
36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.08 1.24 5.98 -51.93 -0.31 0.93 16
39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
42 H 0.37 3.25 9.05 45.56 0.41 3.66 16
43 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16
44 H 0.07 0.87 5.95 -51.93 -0.31 0.56 16
45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
47 H 0.38 9.47 5.94 -40.82 -0.24 9.23 16
48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16
LS Contribution 366.21 15.07 5.52 5.52
Total: -1.00 -30.69 366.21 -8.20 -38.88
By element:
Atomic # 1 Polarization: 20.74 SS G_CDS: -7.67 Total: 13.07 kcal
Atomic # 6 Polarization: -2.61 SS G_CDS: -0.20 Total: -2.81 kcal
Atomic # 7 Polarization: -53.43 SS G_CDS: 0.01 Total: -53.41 kcal
Atomic # 8 Polarization: -17.08 SS G_CDS: -0.84 Total: -17.91 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -30.69 -8.20 -38.88 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037831022.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.294 kcal
(2) G-P(sol) polarization free energy of solvation -30.687 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.981 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.176 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds