Wall clock time and date at job start Tue Mar 31 2020 03:43:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52999 * 109.47153 * 2 1
4 4 H 1.08997 * 109.52332 * 305.08135 * 3 2 1
5 5 C 1.53161 * 109.47865 * 65.15619 * 3 2 1
6 6 N 1.46932 * 108.76845 * 174.59711 * 5 3 2
7 7 C 1.34777 * 120.63253 * 126.41168 * 6 5 3
8 8 O 1.21282 * 119.99865 * 359.97438 * 7 6 5
9 9 C 1.50697 * 119.99896 * 179.97438 * 7 6 5
10 10 C 1.52998 * 109.47264 * 186.08672 * 9 7 6
11 11 C 1.53000 * 109.46853 * 62.74452 * 10 9 7
12 12 C 1.52993 * 109.47257 * 182.74675 * 10 9 7
13 13 O 1.42902 * 109.46996 * 302.74906 * 10 9 7
14 14 C 1.46930 * 118.73620 * 306.38745 * 6 5 3
15 15 C 1.53193 * 108.77443 * 53.60801 * 14 6 5
16 16 C 1.53040 * 109.49849 * 184.99772 * 3 2 1
17 17 H 1.09009 * 109.45868 * 58.68042 * 16 3 2
18 18 N 1.46499 * 109.46275 * 298.70422 * 16 3 2
19 19 C 1.36941 * 119.99880 * 154.97125 * 18 16 3
20 20 H 1.07998 * 119.99750 * 359.97438 * 19 18 16
21 21 C 1.38808 * 119.99686 * 180.02562 * 19 18 16
22 22 N 1.31622 * 120.00266 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 120.00078 * 180.02562 * 21 19 18
24 24 H 1.48493 * 109.47237 * 179.97438 * 23 21 19
25 25 H 1.48506 * 109.46783 * 299.99688 * 23 21 19
26 26 H 1.48499 * 109.47276 * 59.99264 * 23 21 19
27 27 H 1.09004 * 109.47376 * 60.00107 * 1 2 3
28 28 H 1.09000 * 109.47029 * 180.02562 * 1 2 3
29 29 H 1.09002 * 109.47484 * 299.99875 * 1 2 3
30 30 H 1.09002 * 109.47484 * 240.00124 * 2 1 3
31 31 H 1.09004 * 109.47376 * 119.99893 * 2 1 3
32 32 H 1.08997 * 109.59332 * 54.80925 * 5 3 2
33 33 H 1.08999 * 109.70812 * 294.44526 * 5 3 2
34 34 H 1.09005 * 109.46959 * 306.09100 * 9 7 6
35 35 H 1.09001 * 109.47253 * 66.08506 * 9 7 6
36 36 H 1.09006 * 109.47154 * 60.00537 * 11 10 9
37 37 H 1.09002 * 109.46909 * 179.97438 * 11 10 9
38 38 H 1.08998 * 109.47505 * 300.00359 * 11 10 9
39 39 H 1.08998 * 109.47617 * 60.23783 * 12 10 9
40 40 H 1.09001 * 109.46886 * 180.23761 * 12 10 9
41 41 H 1.08996 * 109.47249 * 300.23484 * 12 10 9
42 42 H 0.96700 * 113.99909 * 180.02562 * 13 10 9
43 43 H 1.09003 * 109.58459 * 293.82518 * 14 6 5
44 44 H 1.08996 * 109.58509 * 173.39731 * 14 6 5
45 45 H 1.08996 * 109.49682 * 185.41239 * 15 14 6
46 46 H 1.09000 * 109.52431 * 65.33295 * 15 14 6
47 47 H 0.97000 * 119.99957 * 334.97243 * 18 16 3
48 48 H 0.97000 * 119.99870 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6047 1.9827 -0.8407
5 6 1.6382 2.1262 1.3103
6 7 2.2445 3.4640 1.3507
7 6 1.4849 4.5559 1.5682
8 8 0.2889 4.4397 1.7324
9 6 2.1218 5.9212 1.6073
10 6 1.0761 6.9602 2.0169
11 6 0.5777 6.6523 3.4303
12 6 1.7050 8.3546 1.9903
13 8 -0.0226 6.9156 1.1042
14 6 3.6947 3.5887 1.1500
15 6 4.0734 2.8882 -0.1587
16 6 3.5652 1.4450 -0.1257
17 1 3.8546 0.9371 -1.0457
18 7 4.1507 0.7475 1.0219
19 6 5.3883 0.1713 0.9143
20 1 5.9325 0.2308 -0.0167
21 6 5.9428 -0.4900 2.0014
22 7 5.2793 -0.5628 3.1359
23 14 7.6313 -1.2754 1.8550
24 1 7.9942 -1.9133 3.1459
25 1 7.6078 -2.3034 0.7836
26 1 8.6345 -0.2333 1.5191
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3634 0.5138 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 1.9962 1.5372 2.1547
33 1 0.5530 2.2153 1.3608
34 1 2.9370 5.9212 2.3309
35 1 2.5123 6.1684 0.6201
36 1 1.4157 6.6863 4.1266
37 1 -0.1670 7.3928 3.7223
38 1 0.1297 5.6588 3.4493
39 1 2.0563 8.5757 0.9825
40 1 0.9611 9.0944 2.2862
41 1 2.5456 8.3874 2.6834
42 1 -0.7251 7.5497 1.3031
43 1 4.2203 3.1189 1.9813
44 1 3.9662 4.6428 1.0922
45 1 5.1574 2.8897 -0.2716
46 1 3.6194 3.4147 -0.9982
47 1 3.6617 0.6938 1.8579
48 1 5.6670 -1.0247 3.8957
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001037831022.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:43:54
Heat of formation + Delta-G solvation = -108.512409 kcal
Electronic energy + Delta-G solvation = -26247.484271 eV
Core-core repulsion = 22722.262513 eV
Total energy + Delta-G solvation = -3525.221758 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 298.204 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.44292 -39.68925 -38.17755 -35.80040 -35.35397 -33.59817 -33.35991 -30.98006
-30.48673 -28.93025 -28.15017 -26.17713 -25.30208 -25.00606 -22.16158 -21.81033
-20.54820 -19.54339 -19.20448 -18.11900 -17.46539 -16.91844 -16.67529 -16.33507
-15.92971 -15.71661 -15.45482 -15.07669 -14.79786 -14.75237 -14.42302 -14.24120
-14.12367 -13.88146 -13.56415 -13.19794 -13.01631 -12.89157 -12.81505 -12.79702
-12.64178 -12.59324 -12.37353 -12.31586 -12.15357 -12.11494 -11.82128 -11.62488
-11.55651 -11.42857 -11.10136 -10.93810 -10.80629 -10.43371 -9.47930 -8.89780
-7.86585 -5.12787 1.50958 1.52142 1.57983 1.77471 2.12126 2.61467
3.33899 3.47093 3.59513 3.79020 3.86583 3.89641 4.05172 4.08612
4.11727 4.23028 4.32762 4.39501 4.45806 4.49931 4.57011 4.62235
4.66059 4.72375 4.75157 4.86827 4.89342 4.91349 4.96040 5.02747
5.07062 5.16876 5.18419 5.23125 5.24743 5.30083 5.34079 5.41754
5.47056 5.52895 5.62243 5.72674 6.34822 6.58269 7.01580 7.33329
7.42486 8.18868 8.42996 9.36522
Molecular weight = 298.20amu
Principal moments of inertia in cm(-1)
A = 0.017195 B = 0.004277 C = 0.003762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1627.997923 B = 6544.519760 C = 7442.018054
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.105 4.105
3 C -0.091 4.091
4 H 0.080 0.920
5 C 0.127 3.873
6 N -0.609 5.609
7 C 0.509 3.491
8 O -0.563 6.563
9 C -0.129 4.129
10 C 0.140 3.860
11 C -0.182 4.182
12 C -0.170 4.170
13 O -0.568 6.568
14 C 0.120 3.880
15 C -0.143 4.143
16 C 0.172 3.828
17 H 0.045 0.955
18 N -0.724 5.724
19 C -0.227 4.227
20 H 0.075 0.925
21 C -0.071 4.071
22 N -0.969 5.969
23 Si 0.963 3.037
24 H -0.302 1.302
25 H -0.283 1.283
26 H -0.278 1.278
27 H 0.061 0.939
28 H 0.060 0.940
29 H 0.047 0.953
30 H 0.061 0.939
31 H 0.044 0.956
32 H 0.043 0.957
33 H 0.080 0.920
34 H 0.120 0.880
35 H 0.112 0.888
36 H 0.068 0.932
37 H 0.070 0.930
38 H 0.047 0.953
39 H 0.066 0.934
40 H 0.073 0.927
41 H 0.077 0.923
42 H 0.383 0.617
43 H 0.051 0.949
44 H 0.106 0.894
45 H 0.068 0.932
46 H 0.073 0.927
47 H 0.373 0.627
48 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.272 16.485 -4.718 18.626
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.144 4.144
3 C -0.111 4.111
4 H 0.098 0.902
5 C 0.004 3.996
6 N -0.342 5.342
7 C 0.298 3.702
8 O -0.442 6.442
9 C -0.168 4.168
10 C 0.099 3.901
11 C -0.240 4.240
12 C -0.227 4.227
13 O -0.375 6.375
14 C -0.003 4.003
15 C -0.183 4.183
16 C 0.063 3.937
17 H 0.063 0.937
18 N -0.365 5.365
19 C -0.360 4.360
20 H 0.093 0.907
21 C -0.264 4.264
22 N -0.621 5.621
23 Si 0.794 3.206
24 H -0.229 1.229
25 H -0.210 1.210
26 H -0.205 1.205
27 H 0.080 0.920
28 H 0.079 0.921
29 H 0.066 0.934
30 H 0.080 0.920
31 H 0.063 0.937
32 H 0.062 0.938
33 H 0.098 0.902
34 H 0.138 0.862
35 H 0.130 0.870
36 H 0.087 0.913
37 H 0.089 0.911
38 H 0.066 0.934
39 H 0.085 0.915
40 H 0.092 0.908
41 H 0.096 0.904
42 H 0.232 0.768
43 H 0.069 0.931
44 H 0.124 0.876
45 H 0.086 0.914
46 H 0.092 0.908
47 H 0.206 0.794
48 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -7.369 15.901 -4.973 18.217
hybrid contribution 0.610 -0.641 0.895 1.259
sum -6.759 15.259 -4.078 17.180
Atomic orbital electron populations
1.21774 0.94841 1.01874 1.01748 1.21341 0.96005 0.95336 1.01676
1.21629 0.95915 0.96307 0.97248 0.90169 1.21397 0.98352 0.82538
0.97277 1.48241 1.08840 1.06307 1.70779 1.21088 0.86746 0.86816
0.75520 1.90629 1.16102 1.86836 1.50667 1.21907 0.99180 0.89984
1.05751 1.20930 0.86336 0.94209 0.88583 1.22574 1.02177 1.02560
0.96674 1.22428 1.02203 0.94731 1.03362 1.86642 1.32420 1.64326
1.54139 1.21658 0.78736 1.01687 0.98177 1.22391 1.01394 0.97639
0.96895 1.20441 0.90943 0.91646 0.90653 0.93687 1.42567 1.18266
1.64284 1.11345 1.19539 0.94350 1.25298 0.96768 0.90733 1.25365
1.01780 1.03161 0.96053 1.69804 1.39643 1.49775 1.02839 0.85357
0.80982 0.78421 0.75848 1.22912 1.20984 1.20469 0.91957 0.92095
0.93375 0.91988 0.93743 0.93837 0.90192 0.86155 0.87010 0.91321
0.91117 0.93406 0.91481 0.90822 0.90361 0.76837 0.93060 0.87633
0.91363 0.90849 0.79361 0.94429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.02 9.67 71.98 0.70 -3.33 16
2 C -0.11 -3.49 5.19 30.59 0.16 -3.33 16
3 C -0.09 -3.03 2.14 -10.73 -0.02 -3.05 16
4 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
5 C 0.13 4.52 5.03 86.35 0.43 4.95 16
6 N -0.61 -19.66 2.97 -818.95 -2.43 -22.09 16
7 C 0.51 15.98 7.18 87.66 0.63 16.61 16
8 O -0.56 -21.28 12.61 16.71 0.21 -21.07 16
9 C -0.13 -2.86 3.34 29.85 0.10 -2.76 16
10 C 0.14 2.83 0.98 -10.80 -0.01 2.82 16
11 C -0.18 -3.89 8.53 71.98 0.61 -3.27 16
12 C -0.17 -2.23 8.81 71.98 0.63 -1.60 16
13 O -0.57 -13.63 11.54 -129.24 -1.49 -15.12 16
14 C 0.12 3.63 6.04 86.36 0.52 4.15 16
15 C -0.14 -4.46 5.78 30.67 0.18 -4.28 16
16 C 0.17 6.35 2.53 45.02 0.11 6.47 16
17 H 0.05 1.71 8.08 -2.38 -0.02 1.69 16
18 N -0.72 -33.72 3.72 -322.81 -1.20 -34.92 16
19 C -0.23 -11.86 9.93 84.03 0.83 -11.03 16
20 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16
21 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16
22 N -0.97 -57.74 13.06 21.65 0.28 -57.45 16
23 Si 0.96 45.02 29.55 68.60 2.03 47.04 16
24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16
25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16
26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
29 H 0.05 1.38 6.70 -2.39 -0.02 1.37 16
30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
31 H 0.04 1.75 7.70 -2.39 -0.02 1.73 16
32 H 0.04 1.78 6.64 -2.39 -0.02 1.76 16
33 H 0.08 2.91 5.73 -2.39 -0.01 2.89 16
34 H 0.12 2.18 7.63 -2.38 -0.02 2.17 16
35 H 0.11 2.16 7.96 -2.39 -0.02 2.14 16
36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16
37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
38 H 0.05 1.39 5.98 -2.39 -0.01 1.38 16
39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
42 H 0.38 6.11 9.05 -74.06 -0.67 5.44 16
43 H 0.05 1.91 7.74 -2.39 -0.02 1.89 16
44 H 0.11 2.38 5.95 -2.39 -0.01 2.37 16
45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
47 H 0.37 19.14 5.94 -92.71 -0.55 18.59 16
48 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16
Total: -1.00 -67.54 366.21 2.47 -65.07
By element:
Atomic # 1 Polarization: 39.94 SS G_CDS: -0.27 Total: 39.67 kcal
Atomic # 6 Polarization: -6.48 SS G_CDS: 5.35 Total: -1.13 kcal
Atomic # 7 Polarization: -111.11 SS G_CDS: -3.35 Total: -114.47 kcal
Atomic # 8 Polarization: -34.91 SS G_CDS: -1.28 Total: -36.19 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal
Total: -67.54 2.47 -65.07 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037831022.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.444 kcal
(2) G-P(sol) polarization free energy of solvation -67.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.069 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.512 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds