Wall clock time and date at job start Tue Mar 31 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47159 * 2 1 4 4 C 1.53004 * 109.46553 * 119.99835 * 2 1 3 5 5 C 1.50693 * 109.47203 * 239.99831 * 2 1 3 6 6 O 1.21280 * 120.00168 * 359.70157 * 5 2 1 7 7 N 1.34777 * 119.99879 * 179.70499 * 5 2 1 8 8 C 1.46918 * 120.63101 * 354.60254 * 7 5 2 9 9 C 1.53627 * 108.54458 * 126.36870 * 8 7 5 10 10 C 1.53037 * 109.24179 * 54.85733 * 9 8 7 11 11 N 1.46502 * 109.46121 * 178.49479 * 10 9 8 12 12 C 1.36933 * 120.00320 * 60.06605 * 11 10 9 13 13 H 1.08000 * 119.99898 * 324.28210 * 12 11 10 14 14 C 1.38812 * 120.00387 * 144.28914 * 12 11 10 15 15 N 1.31612 * 120.00257 * 157.75227 * 14 12 11 16 16 Si 1.86803 * 119.99646 * 337.74905 * 14 12 11 17 17 H 1.48496 * 109.46994 * 92.39699 * 16 14 12 18 18 H 1.48497 * 109.46957 * 212.39926 * 16 14 12 19 19 H 1.48505 * 109.47178 * 332.39460 * 16 14 12 20 20 C 1.46498 * 119.99828 * 240.06706 * 11 10 9 21 21 C 1.52999 * 109.47176 * 83.51190 * 20 11 10 22 22 O 1.42897 * 109.47602 * 65.61824 * 21 20 11 23 23 C 1.53045 * 109.53876 * 298.50885 * 10 9 8 24 24 C 1.46932 * 120.63003 * 174.88080 * 7 5 2 25 25 H 1.08996 * 109.47171 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46590 * 60.00163 * 1 2 3 27 27 H 1.08993 * 109.47273 * 300.00072 * 1 2 3 28 28 H 1.09004 * 109.47315 * 79.90260 * 3 2 1 29 29 H 1.08999 * 109.46979 * 199.90665 * 3 2 1 30 30 H 1.08998 * 109.47168 * 319.90335 * 3 2 1 31 31 H 1.08999 * 109.46973 * 56.49276 * 4 2 1 32 32 H 1.09000 * 109.46449 * 176.48567 * 4 2 1 33 33 H 1.08995 * 109.47180 * 296.48355 * 4 2 1 34 34 H 1.08999 * 109.58955 * 246.19849 * 8 7 5 35 35 H 1.08998 * 109.58819 * 6.63006 * 8 7 5 36 36 H 1.09007 * 109.63399 * 294.86647 * 9 8 7 37 37 H 1.08999 * 109.46080 * 174.74105 * 9 8 7 38 38 H 1.08993 * 109.45344 * 58.52572 * 10 9 8 39 39 H 0.97000 * 119.99764 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47410 * 203.51118 * 20 11 10 41 41 H 1.09004 * 109.47576 * 323.51292 * 20 11 10 42 42 H 1.09004 * 109.47444 * 185.62353 * 21 20 11 43 43 H 1.09007 * 109.47053 * 305.61876 * 21 20 11 44 44 H 0.96695 * 114.00526 * 180.02562 * 22 21 20 45 45 H 1.08996 * 109.49949 * 301.41851 * 23 10 9 46 46 H 1.08998 * 109.52796 * 181.32852 * 23 10 9 47 47 H 1.08997 * 109.58690 * 353.37300 * 24 7 5 48 48 H 1.08998 * 109.58509 * 113.65936 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0324 -0.7104 -1.2304 6 8 1.2443 -1.1761 -2.0260 7 7 3.3575 -0.8283 -1.4466 8 6 4.3228 -0.1694 -0.5564 9 6 5.3204 -1.2231 -0.0519 10 6 5.9542 -1.9323 -1.2508 11 7 6.9330 -2.9135 -0.7760 12 6 6.5347 -3.9381 0.0405 13 1 5.7631 -3.7723 0.7778 14 6 7.1227 -5.1898 -0.0792 15 7 7.0892 -6.0321 0.9316 16 14 7.9615 -5.6788 -1.6751 17 1 9.4050 -5.3386 -1.6001 18 1 7.8078 -7.1405 -1.8874 19 1 7.3383 -4.9462 -2.8066 20 6 8.3380 -2.7985 -1.1747 21 6 9.0512 -1.8097 -0.2503 22 8 9.0899 -2.3402 1.0759 23 6 4.8666 -2.6463 -2.0568 24 6 3.8639 -1.6133 -2.5807 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 1.9913 1.8451 1.0118 29 1 3.0721 1.4629 -0.3499 30 1 1.4200 2.0470 -0.6619 31 1 1.6261 -1.7291 1.2813 32 1 3.1281 -0.7761 1.2184 33 1 1.7289 -0.1723 2.1381 34 1 4.8545 0.6079 -1.1052 35 1 3.7968 0.2725 0.2899 36 1 4.8001 -1.9525 0.5689 37 1 6.0984 -0.7349 0.5350 38 1 6.4531 -1.1990 -1.8842 39 1 7.4998 -6.9069 0.8477 40 1 8.8175 -3.7747 -1.1018 41 1 8.3959 -2.4413 -2.2029 42 1 10.0685 -1.6480 -0.6068 43 1 8.5125 -0.8621 -0.2470 44 1 9.5285 -1.7646 1.7172 45 1 4.3506 -3.3622 -1.4171 46 1 5.3211 -3.1708 -2.8972 47 1 3.0351 -2.1244 -3.0705 48 1 4.3568 -0.9510 -3.2924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098540443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:27 Heat of formation + Delta-G solvation = -72.165433 kcal Electronic energy + Delta-G solvation = -26756.699801 eV Core-core repulsion = 23233.054165 eV Total energy + Delta-G solvation = -3523.645635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75327 -39.33148 -37.74034 -36.91863 -36.23978 -33.83736 -32.46734 -31.96031 -29.60635 -28.26640 -28.11654 -26.89778 -25.04061 -24.26989 -23.28352 -22.23974 -21.09790 -19.77445 -18.35008 -18.20603 -17.61889 -17.15832 -16.97524 -16.37616 -16.29924 -15.50949 -15.32107 -15.21491 -15.04751 -14.84630 -14.50907 -14.37779 -14.17544 -13.90945 -13.53203 -13.38511 -13.20356 -13.12242 -12.95342 -12.83121 -12.73946 -12.55870 -12.50877 -12.27471 -12.09286 -11.89951 -11.87176 -11.76555 -11.46377 -11.27654 -11.17002 -10.65076 -10.58734 -10.40450 -9.60425 -8.67115 -8.06389 -5.39285 1.29716 1.40928 1.49390 1.62359 2.07412 2.49430 3.11021 3.34705 3.44107 3.75079 3.82698 3.94066 3.94681 4.08823 4.19780 4.21277 4.36496 4.42842 4.47887 4.54170 4.62261 4.65161 4.69136 4.70864 4.74331 4.78952 4.80758 4.85644 4.90921 4.92966 4.97297 5.02933 5.07952 5.16205 5.17220 5.24710 5.34215 5.37946 5.46205 5.57541 5.66762 6.05842 6.29254 6.47019 7.09473 7.18369 7.24077 7.78162 8.15165 9.14794 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.004801 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.782225 B = 5830.502533 C = 6164.335337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.155 4.155 4 C -0.153 4.153 5 C 0.514 3.486 6 O -0.593 6.593 7 N -0.604 5.604 8 C 0.093 3.907 9 C -0.131 4.131 10 C 0.175 3.825 11 N -0.602 5.602 12 C -0.207 4.207 13 H 0.036 0.964 14 C -0.028 4.028 15 N -0.958 5.958 16 Si 0.935 3.065 17 H -0.280 1.280 18 H -0.322 1.322 19 H -0.255 1.255 20 C 0.114 3.886 21 C 0.066 3.934 22 O -0.579 6.579 23 C -0.131 4.131 24 C 0.121 3.879 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.254 0.746 40 H 0.035 0.965 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.377 0.623 45 H 0.032 0.968 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 20.504 -2.729 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.086 4.086 3 C -0.212 4.212 4 C -0.210 4.210 5 C 0.304 3.696 6 O -0.474 6.474 7 N -0.336 5.336 8 C -0.028 4.028 9 C -0.170 4.170 10 C 0.069 3.931 11 N -0.324 5.324 12 C -0.338 4.338 13 H 0.054 0.946 14 C -0.222 4.222 15 N -0.604 5.604 16 Si 0.766 3.234 17 H -0.207 1.207 18 H -0.252 1.252 19 H -0.179 1.179 20 C -0.011 4.011 21 C -0.014 4.014 22 O -0.384 6.384 23 C -0.172 4.172 24 C -0.003 4.003 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.142 0.858 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.224 0.776 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.291 19.633 -3.417 20.385 hybrid contribution 0.734 -1.200 -0.246 1.428 sum -3.557 18.432 -3.663 19.126 Atomic orbital electron populations 1.21657 0.92008 1.01658 1.02732 1.20818 0.97963 0.97773 0.92026 1.22311 1.02573 0.91536 1.04774 1.22206 1.02254 0.99945 0.96557 1.21321 0.81715 0.79081 0.87514 1.90621 1.56094 1.51518 1.49117 1.48183 1.05672 1.50458 1.29281 1.22696 0.90330 0.94755 0.95040 1.22300 0.98427 0.97577 0.98738 1.20569 0.88773 0.90251 0.93486 1.44207 1.02363 1.29356 1.56471 1.18289 1.18895 0.87835 1.08734 0.94640 1.25911 1.00622 0.96523 0.99183 1.70013 1.49731 1.09221 1.31436 0.86037 0.78346 0.75153 0.83857 1.20744 1.25186 1.17950 1.21582 0.84930 0.98148 0.96473 1.22840 0.98475 0.96612 0.83488 1.86844 1.82331 1.49360 1.19899 1.22218 0.97278 0.97911 0.99746 1.21542 0.96800 0.93538 0.88385 0.94282 0.92750 0.89327 0.88807 0.90088 0.91652 0.94374 0.90996 0.88584 0.88348 0.85843 0.94559 0.90439 0.89524 0.93754 0.94652 0.90028 0.92855 0.92449 0.77597 0.94951 0.92136 0.91543 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 7.67 71.98 0.55 -2.08 16 2 C -0.08 -1.80 0.75 -52.93 -0.04 -1.84 16 3 C -0.16 -2.24 8.05 71.98 0.58 -1.66 16 4 C -0.15 -3.30 8.09 71.98 0.58 -2.71 16 5 C 0.51 15.47 6.48 87.65 0.57 16.04 16 6 O -0.59 -22.67 15.42 -3.03 -0.05 -22.71 16 7 N -0.60 -16.65 2.96 -818.08 -2.42 -19.07 16 8 C 0.09 2.00 3.88 86.51 0.34 2.34 16 9 C -0.13 -3.91 5.00 30.82 0.15 -3.75 16 10 C 0.17 5.88 2.59 45.02 0.12 6.00 16 11 N -0.60 -25.92 2.01 -677.90 -1.37 -27.28 16 12 C -0.21 -11.43 8.57 84.03 0.72 -10.71 16 13 H 0.04 2.23 7.02 -2.91 -0.02 2.21 16 14 C -0.03 -1.67 5.28 84.86 0.45 -1.22 16 15 N -0.96 -62.08 13.97 21.65 0.30 -61.78 16 16 Si 0.94 47.30 25.07 68.60 1.72 49.02 16 17 H -0.28 -13.57 6.53 99.48 0.65 -12.92 16 18 H -0.32 -17.00 7.11 99.48 0.71 -16.30 16 19 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 20 C 0.11 4.41 4.59 86.38 0.40 4.81 16 21 C 0.07 2.08 7.38 71.98 0.53 2.61 16 22 O -0.58 -22.30 13.47 -148.98 -2.01 -24.31 16 23 C -0.13 -4.70 5.31 30.67 0.16 -4.54 16 24 C 0.12 3.56 6.42 86.36 0.55 4.12 16 25 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 26 H 0.05 1.21 8.09 -2.39 -0.02 1.19 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 0.92 7.93 -2.39 -0.02 0.90 16 29 H 0.08 1.08 4.69 -2.39 -0.01 1.07 16 30 H 0.06 0.92 7.98 -2.39 -0.02 0.90 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.64 4.23 -2.39 -0.01 1.63 16 33 H 0.10 1.49 8.06 -2.39 -0.02 1.48 16 34 H 0.10 1.55 8.10 -2.39 -0.02 1.53 16 35 H 0.12 2.18 2.87 -2.39 -0.01 2.18 16 36 H 0.04 1.37 6.47 -2.38 -0.02 1.36 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.09 2.35 7.88 -2.39 -0.02 2.33 16 39 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 40 H 0.04 1.63 3.27 -2.39 -0.01 1.63 16 41 H 0.08 2.60 8.06 -2.38 -0.02 2.58 16 42 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.38 10.04 9.12 -74.06 -0.68 9.36 16 45 H 0.03 1.42 7.71 -2.39 -0.02 1.40 16 46 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.07 2.23 7.04 -2.39 -0.02 2.21 16 48 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -79.59 355.60 2.06 -77.53 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.22 Total: 21.20 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.66 Total: 7.40 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -3.49 Total: -108.13 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -2.05 Total: -47.03 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.72 Total: 49.02 kcal Total: -79.59 2.06 -77.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098540443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.365 kcal (2) G-P(sol) polarization free energy of solvation -79.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds