Wall clock time and date at job start Tue Mar 31 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47030 * 2 1 4 4 C 1.52997 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46985 * 60.00377 * 4 3 2 6 6 C 1.53001 * 109.47487 * 299.99889 * 4 3 2 7 7 C 1.50703 * 109.47226 * 179.97438 * 4 3 2 8 8 O 1.21281 * 119.99689 * 0.02562 * 7 4 3 9 9 N 1.34780 * 120.00074 * 180.02562 * 7 4 3 10 10 C 1.46497 * 119.99644 * 180.02562 * 9 7 4 11 11 H 1.09002 * 109.45244 * 324.96485 * 10 9 7 12 12 C 1.53044 * 109.46071 * 84.93391 * 10 9 7 13 13 C 1.53185 * 109.31209 * 58.65391 * 12 10 9 14 14 N 1.46927 * 108.78055 * 54.63473 * 13 12 10 15 15 C 1.36936 * 120.63473 * 126.36770 * 14 13 12 16 16 H 1.07998 * 120.00268 * 207.69747 * 15 14 13 17 17 C 1.38813 * 119.99713 * 27.69787 * 15 14 13 18 18 N 1.31615 * 120.00126 * 17.36069 * 17 15 14 19 19 Si 1.86797 * 119.99971 * 197.36326 * 17 15 14 20 20 H 1.48507 * 109.46894 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47606 * 119.99556 * 19 17 15 22 22 H 1.48499 * 109.47200 * 240.00179 * 19 17 15 23 23 C 1.46937 * 118.73538 * 306.39628 * 14 13 12 24 24 C 1.53042 * 109.45813 * 205.00051 * 10 9 7 25 25 H 1.09004 * 109.49709 * 181.39384 * 24 10 9 26 26 O 1.42902 * 109.52464 * 61.31556 * 24 10 9 27 27 H 1.08999 * 109.47043 * 60.00148 * 1 2 3 28 28 H 1.09004 * 109.46594 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47377 * 299.99569 * 1 2 3 30 30 H 1.09004 * 109.47230 * 239.99966 * 2 1 3 31 31 H 1.08999 * 109.47043 * 119.99852 * 2 1 3 32 32 H 1.09004 * 109.47141 * 59.99912 * 3 2 1 33 33 H 1.08999 * 109.47087 * 299.99825 * 3 2 1 34 34 H 1.09006 * 109.47379 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.46723 * 299.99527 * 5 4 3 36 36 H 1.08999 * 109.47391 * 59.99692 * 5 4 3 37 37 H 1.08991 * 109.47416 * 300.00197 * 6 4 3 38 38 H 1.09006 * 109.46459 * 60.00302 * 6 4 3 39 39 H 1.08998 * 109.47003 * 179.97438 * 6 4 3 40 40 H 0.96996 * 120.00114 * 0.02562 * 9 7 4 41 41 H 1.08997 * 109.49393 * 298.69863 * 12 10 9 42 42 H 1.09005 * 109.52452 * 178.62074 * 12 10 9 43 43 H 1.09003 * 109.58735 * 294.85096 * 13 12 10 44 44 H 1.09000 * 109.59033 * 174.42088 * 13 12 10 45 45 H 0.97004 * 119.99984 * 180.02562 * 18 17 15 46 46 H 1.08997 * 109.58273 * 293.81087 * 23 14 13 47 47 H 1.08999 * 109.58071 * 173.39608 * 23 14 13 48 48 H 0.96697 * 114.00197 * 180.08342 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.7211 -1.2483 6 6 4.0795 0.7215 1.2502 7 6 4.0723 2.8633 0.0000 8 8 3.2842 3.7851 -0.0004 9 7 5.3974 3.1096 -0.0001 10 6 5.8857 4.4908 -0.0002 11 1 5.2132 5.1135 -0.5901 12 6 5.9356 5.0140 1.4372 13 6 6.8545 4.1162 2.2715 14 7 8.1651 4.0377 1.6121 15 6 9.3110 4.3373 2.2994 16 1 10.1750 4.7127 1.7712 17 6 9.3622 4.1584 3.6750 18 7 8.4689 3.3995 4.2736 19 14 10.6987 4.9949 4.6766 20 1 11.5721 5.7864 3.7731 21 1 10.0756 5.8966 5.6784 22 1 11.5115 3.9664 5.3741 23 6 8.2228 3.6323 0.2010 24 6 7.2886 4.5356 -0.6101 25 1 7.6625 5.5593 -0.5879 26 8 7.2363 4.0763 -1.9623 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.1705 0.7207 -1.2477 35 1 3.7172 -0.3065 -1.2483 36 1 3.7175 1.2348 -2.1385 37 1 3.7159 1.2353 2.1399 38 1 3.7162 -0.3063 1.2501 39 1 5.1695 0.7211 1.2503 40 1 6.0278 2.3724 -0.0001 41 1 4.9323 5.0038 1.8631 42 1 6.3219 6.0333 1.4407 43 1 6.4221 3.1183 2.3448 44 1 6.9721 4.5399 3.2689 45 1 8.5044 3.2748 5.2349 46 1 7.9020 2.5950 0.1055 47 1 9.2432 3.7368 -0.1677 48 1 8.0928 4.0768 -2.4112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099982905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:12 Heat of formation + Delta-G solvation = -88.816247 kcal Electronic energy + Delta-G solvation = -26377.611725 eV Core-core repulsion = 22853.244056 eV Total energy + Delta-G solvation = -3524.367669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20570 -38.32503 -36.37582 -35.42833 -34.04118 -32.73158 -31.50017 -30.01869 -28.55539 -27.31567 -26.49112 -25.38915 -23.71392 -22.30624 -21.89270 -21.07770 -18.99847 -18.61620 -17.14548 -16.73067 -16.35984 -15.58197 -15.30211 -14.95476 -14.71506 -14.37172 -14.24590 -13.91547 -13.79654 -13.39690 -13.10259 -12.99832 -12.62648 -12.35831 -12.30985 -12.09476 -12.00905 -11.82403 -11.67094 -11.63882 -11.20049 -10.99591 -10.91761 -10.91301 -10.66172 -10.59393 -10.44003 -10.36496 -10.20109 -9.96758 -9.81901 -9.42425 -9.22207 -8.56554 -8.48809 -6.79300 -5.88677 -3.32577 3.06503 3.31545 3.39981 3.41432 3.58206 4.35489 4.51760 4.70254 4.79714 4.87795 5.11627 5.15693 5.23306 5.26903 5.32701 5.44471 5.50324 5.59066 5.60968 5.67855 5.71136 5.73240 5.82571 5.87261 5.89773 5.96296 6.01281 6.07850 6.10872 6.12668 6.20501 6.29517 6.39736 6.44315 6.44692 6.56854 6.64438 6.70802 7.01607 7.27309 7.58106 7.70257 7.91648 7.98106 8.33848 8.66533 9.09727 9.72097 10.27484 11.19327 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.004188 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.652648 B = 6684.112348 C = 7392.758488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.093 4.093 4 C -0.081 4.081 5 C -0.140 4.140 6 C -0.142 4.142 7 C 0.523 3.477 8 O -0.553 6.553 9 N -0.702 5.702 10 C 0.165 3.835 11 H 0.077 0.923 12 C -0.153 4.153 13 C 0.173 3.827 14 N -0.587 5.587 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.898 5.898 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.119 3.881 24 C 0.076 3.924 25 H 0.065 0.935 26 O -0.570 6.570 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.401 0.599 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.022 0.978 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.022 0.978 47 H 0.058 0.942 48 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 -5.808 -9.639 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.131 4.131 4 C -0.084 4.084 5 C -0.197 4.197 6 C -0.200 4.200 7 C 0.309 3.691 8 O -0.431 6.431 9 N -0.353 5.353 10 C 0.060 3.940 11 H 0.095 0.905 12 C -0.193 4.193 13 C 0.047 3.953 14 N -0.311 5.311 15 C -0.388 4.388 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.542 5.542 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C -0.008 4.008 24 C 0.015 3.985 25 H 0.083 0.917 26 O -0.375 6.375 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.237 0.763 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.934 -5.239 -9.319 14.593 hybrid contribution 1.667 0.165 0.530 1.757 sum -8.267 -5.074 -8.789 13.090 Atomic orbital electron populations 1.21763 0.96054 1.01215 1.01858 1.21685 0.95657 0.97026 1.02188 1.21407 0.92092 0.96339 1.03234 1.20784 0.97228 0.92740 0.97696 1.21892 1.01344 1.00389 0.96120 1.21910 1.01661 1.00304 0.96086 1.20434 0.82395 0.90824 0.75433 1.90639 1.55518 1.46325 1.50656 1.45929 1.06706 1.08900 1.73744 1.20800 0.93223 0.83096 0.96833 0.90531 1.22582 1.00972 1.01026 0.94751 1.20787 0.82790 0.95553 0.96149 1.44018 1.03137 1.78248 1.05695 1.19193 0.92441 1.37085 0.90077 0.91572 1.25040 0.98267 0.98123 0.97896 1.70041 1.37188 1.37604 1.09357 0.86224 0.81241 0.79068 0.80202 1.20238 1.21458 1.21677 1.21528 0.97142 0.94970 0.87195 1.22746 0.96216 0.98434 0.81125 0.91710 1.86485 1.35541 1.89513 1.25931 0.92869 0.93011 0.92756 0.91803 0.91629 0.91319 0.91499 0.92091 0.91422 0.92274 0.91930 0.91446 0.91841 0.76334 0.91922 0.91623 0.95999 0.89292 0.93562 0.96074 0.92331 0.78082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.13 -1.24 5.23 -26.73 -0.14 -1.38 16 3 C -0.09 -1.15 3.56 -26.73 -0.10 -1.25 16 4 C -0.08 -1.07 0.64 -155.66 -0.10 -1.17 16 5 C -0.14 -1.57 8.02 37.16 0.30 -1.27 16 6 C -0.14 -1.79 8.02 37.16 0.30 -1.50 16 7 C 0.52 8.88 6.44 -10.98 -0.07 8.81 16 8 O -0.55 -11.15 15.64 5.56 0.09 -11.06 16 9 N -0.70 -11.89 3.94 -53.76 -0.21 -12.10 16 10 C 0.17 3.01 2.47 -67.89 -0.17 2.84 16 11 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 12 C -0.15 -3.03 5.77 -26.61 -0.15 -3.19 16 13 C 0.17 3.98 5.05 -3.71 -0.02 3.96 16 14 N -0.59 -13.78 3.00 -172.32 -0.52 -14.30 16 15 C -0.26 -6.75 9.59 -15.06 -0.14 -6.90 16 16 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 17 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 18 N -0.90 -25.11 11.19 55.49 0.62 -24.49 16 19 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.12 2.28 5.84 -3.71 -0.02 2.26 16 24 C 0.08 1.28 3.36 -26.61 -0.09 1.19 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 O -0.57 -8.51 13.21 -35.23 -0.47 -8.98 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 31 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 32 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.06 0.69 7.56 -51.93 -0.39 0.29 16 35 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 39 H 0.06 0.85 7.57 -51.93 -0.39 0.46 16 40 H 0.40 6.56 5.70 -40.82 -0.23 6.33 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.02 0.53 7.74 -51.93 -0.40 0.12 16 44 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.02 0.41 6.64 -51.93 -0.34 0.07 16 47 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 48 H 0.37 3.98 9.08 45.56 0.41 4.39 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -30.31 365.79 -7.70 -38.01 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.58 Total: 9.90 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.12 Total: 1.52 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.11 Total: -50.89 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.38 Total: -20.04 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.31 -7.70 -38.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099982905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.805 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds