Wall clock time and date at job start Tue Mar 31 2020 04:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47186 * 2 1 4 4 C 1.36933 * 120.00080 * 275.16067 * 3 2 1 5 5 H 1.08000 * 120.00443 * 36.20927 * 4 3 2 6 6 C 1.38812 * 119.99734 * 216.21060 * 4 3 2 7 7 N 1.31617 * 120.00473 * 11.65536 * 6 4 3 8 8 Si 1.86810 * 119.99889 * 191.65906 * 6 4 3 9 9 H 1.48490 * 109.47177 * 59.99908 * 8 6 4 10 10 H 1.48498 * 109.47138 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46774 * 299.99747 * 8 6 4 12 12 C 1.46500 * 119.99705 * 95.15812 * 3 2 1 13 13 H 1.09007 * 109.47280 * 178.79518 * 12 3 2 14 14 C 1.53000 * 109.47284 * 58.79943 * 12 3 2 15 15 C 1.53002 * 109.47346 * 298.79645 * 12 3 2 16 16 N 1.46493 * 109.46970 * 304.99933 * 15 12 3 17 17 C 1.34774 * 119.99919 * 180.02562 * 16 15 12 18 18 O 1.21282 * 120.00055 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00284 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47494 * 184.23153 * 19 17 16 21 21 C 1.52992 * 109.47432 * 178.54263 * 20 19 17 22 22 O 1.42904 * 109.47142 * 298.54573 * 20 19 17 23 23 C 1.53008 * 109.47143 * 58.54372 * 20 19 17 24 24 C 1.52994 * 117.50043 * 111.37890 * 23 20 19 25 25 C 1.53000 * 60.00139 * 107.49212 * 24 23 20 26 26 H 1.09000 * 109.47115 * 59.99281 * 1 2 3 27 27 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46637 * 299.99685 * 1 2 3 29 29 H 1.09001 * 109.46397 * 240.00159 * 2 1 3 30 30 H 1.09000 * 109.47115 * 120.00719 * 2 1 3 31 31 H 0.97003 * 120.00318 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47503 * 179.97438 * 14 12 3 33 33 H 1.09007 * 109.46615 * 299.99983 * 14 12 3 34 34 H 1.09001 * 109.47332 * 59.99636 * 14 12 3 35 35 H 1.08999 * 109.46992 * 185.00134 * 15 12 3 36 36 H 1.08993 * 109.46772 * 65.00188 * 15 12 3 37 37 H 0.97000 * 120.00629 * 359.97438 * 16 15 12 38 38 H 1.09001 * 109.47301 * 64.23240 * 19 17 16 39 39 H 1.08999 * 109.46738 * 304.23443 * 19 17 16 40 40 H 1.09001 * 109.47393 * 298.17463 * 21 20 19 41 41 H 1.08998 * 109.47414 * 58.16851 * 21 20 19 42 42 H 1.08997 * 109.47622 * 178.17114 * 21 20 19 43 43 H 0.96704 * 113.99975 * 59.99555 * 22 20 19 44 44 H 1.09003 * 115.55449 * 325.68893 * 23 20 19 45 45 H 1.09001 * 117.49930 * 214.98161 * 24 23 20 46 46 H 1.09005 * 117.49731 * 359.97438 * 24 23 20 47 47 H 1.08998 * 117.49725 * 252.51523 * 25 24 23 48 48 H 1.08990 * 117.50285 * 107.48916 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1461 2.0622 -1.1811 5 1 1.4278 1.9095 -1.9730 6 6 3.1988 2.9491 -1.3605 7 7 4.1959 2.9695 -0.5016 8 14 3.2002 4.1138 -2.8211 9 1 2.0015 4.9879 -2.7583 10 1 4.4257 4.9517 -2.7847 11 1 3.1745 3.3279 -4.0808 12 6 2.3701 2.0337 1.2636 13 1 2.7307 3.0427 1.0635 14 6 3.4670 1.2299 1.9647 15 6 1.1344 2.1028 2.1632 16 7 0.0446 2.7686 1.4455 17 6 -1.1494 2.9437 2.0456 18 8 -1.3218 2.5496 3.1796 19 6 -2.2708 3.6281 1.3072 20 6 -3.4712 3.7924 2.2415 21 6 -4.5965 4.5196 1.5029 22 8 -3.9296 2.5048 2.6590 23 6 -3.0555 4.6079 3.4675 24 6 -3.6436 6.0127 3.6141 25 6 -4.1232 4.8833 4.5281 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.9317 3.5890 -0.6272 32 1 3.7291 1.7156 2.9047 33 1 3.1064 0.2208 2.1648 34 1 4.3474 1.1806 1.3239 35 1 1.3728 2.6661 3.0654 36 1 0.8267 1.0934 2.4358 37 1 0.1825 3.0841 0.5387 38 1 -2.5602 3.0252 0.4464 39 1 -1.9372 4.6088 0.9683 40 1 -4.2575 5.5141 1.2129 41 1 -4.8705 3.9550 0.6117 42 1 -5.4633 4.6079 2.1578 43 1 -3.2664 1.9865 3.1350 44 1 -2.0329 4.4519 3.8113 45 1 -3.0081 6.7810 4.0545 46 1 -4.3265 6.3560 2.8369 47 1 -5.1219 4.4834 4.3524 48 1 -3.8033 4.9085 5.5697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152820654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:59 Heat of formation + Delta-G solvation = -64.850559 kcal Electronic energy + Delta-G solvation = -26280.342196 eV Core-core repulsion = 22757.013758 eV Total energy + Delta-G solvation = -3523.328438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34860 -39.51591 -38.37175 -36.26610 -35.17013 -33.72634 -33.04821 -32.31898 -29.96277 -29.27280 -26.67494 -25.76483 -24.43394 -23.31096 -23.18219 -21.37070 -21.00661 -20.48601 -18.76805 -17.91866 -17.74598 -17.33178 -16.70005 -16.59051 -16.21143 -15.98159 -15.54634 -15.01955 -14.73648 -14.28613 -14.07227 -13.97555 -13.88677 -13.73670 -13.45236 -13.30951 -13.23729 -12.94768 -12.78815 -12.75660 -12.72289 -12.52536 -12.36881 -12.07806 -12.07259 -11.87117 -11.84974 -11.44549 -11.32341 -11.17099 -11.02081 -10.75127 -10.59984 -10.41898 -9.84913 -8.45691 -7.79846 -5.35755 1.52155 1.54855 1.59338 1.71877 2.42110 2.55672 2.85784 3.35740 3.46657 3.60607 3.67148 3.82573 3.95532 4.14503 4.16847 4.28936 4.31231 4.47492 4.55103 4.62278 4.65581 4.69738 4.74385 4.82100 4.84341 4.90364 4.93990 4.94472 4.99998 5.04341 5.07803 5.09012 5.23477 5.25980 5.28392 5.33634 5.42643 5.55098 5.61402 5.73393 5.77353 5.88794 6.53502 6.73918 6.79137 7.26870 7.37296 7.93820 8.47388 9.23227 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.004401 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.402111 B = 6360.943775 C = 6869.345219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.262 4.262 5 H 0.060 0.940 6 C -0.029 4.029 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.301 1.301 11 H -0.284 1.284 12 C 0.181 3.819 13 H 0.072 0.928 14 C -0.135 4.135 15 C 0.116 3.884 16 N -0.698 5.698 17 C 0.509 3.491 18 O -0.582 6.582 19 C -0.164 4.164 20 C 0.179 3.821 21 C -0.141 4.141 22 O -0.575 6.575 23 C -0.193 4.193 24 C -0.169 4.169 25 C -0.168 4.168 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.248 0.752 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.410 0.590 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.382 0.618 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.538 3.955 4.644 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.392 4.392 5 H 0.078 0.922 6 C -0.227 4.227 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.228 1.228 11 H -0.210 1.210 12 C 0.074 3.926 13 H 0.090 0.910 14 C -0.194 4.194 15 C -0.010 4.010 16 N -0.348 5.348 17 C 0.298 3.702 18 O -0.465 6.465 19 C -0.204 4.204 20 C 0.138 3.862 21 C -0.198 4.198 22 O -0.385 6.385 23 C -0.212 4.212 24 C -0.206 4.206 25 C -0.205 4.205 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.246 0.754 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.234 0.766 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.136 0.864 47 H 0.114 0.886 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.008 3.956 5.127 15.433 hybrid contribution 1.419 0.299 -0.797 1.655 sum -12.589 4.255 4.330 13.977 Atomic orbital electron populations 1.22252 0.98019 1.00206 1.00905 1.20836 0.93053 0.86349 0.98452 1.43940 1.76407 1.08986 1.01885 1.19201 1.05620 1.20276 0.94153 0.92205 1.25814 0.94659 1.02705 0.99497 1.70084 1.09175 1.38390 1.38396 0.85568 0.76598 0.79167 0.80308 1.19892 1.22808 1.21045 1.20362 0.89917 0.97948 0.84383 0.90986 1.21876 0.99738 0.98770 0.99002 1.21850 0.88405 0.95970 0.94748 1.45992 1.11567 1.58361 1.18831 1.21014 0.83880 0.78899 0.86444 1.90526 1.82755 1.53325 1.19926 1.22465 0.93973 1.03525 1.00440 1.20396 0.92154 0.83133 0.90556 1.21920 0.97067 1.00545 1.00224 1.86359 1.45021 1.29106 1.78050 1.23048 0.98867 0.99624 0.99648 1.23246 1.03603 0.90644 1.03073 1.22806 0.98860 1.03123 0.95729 0.94026 0.92811 0.93414 0.95197 0.93979 0.94260 0.93315 0.94006 0.93528 0.93184 0.93161 0.75423 0.87302 0.86509 0.88812 0.91467 0.91366 0.76615 0.89262 0.88589 0.86408 0.88551 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.88 71.98 0.71 -4.50 16 2 C 0.14 5.39 5.72 86.38 0.49 5.89 16 3 N -0.59 -25.72 1.85 -678.03 -1.26 -26.97 16 4 C -0.26 -12.62 9.18 84.03 0.77 -11.85 16 5 H 0.06 2.87 7.86 -2.91 -0.02 2.85 16 6 C -0.03 -1.46 4.98 84.86 0.42 -1.03 16 7 N -0.92 -48.46 10.51 21.65 0.23 -48.23 16 8 Si 0.95 40.93 29.57 68.60 2.03 42.96 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 C 0.18 7.57 1.92 44.99 0.09 7.65 16 13 H 0.07 3.49 6.01 -2.38 -0.01 3.48 16 14 C -0.13 -5.41 9.03 71.98 0.65 -4.76 16 15 C 0.12 4.26 4.34 86.38 0.37 4.63 16 16 N -0.70 -23.42 4.11 -463.08 -1.90 -25.32 16 17 C 0.51 15.87 6.95 87.66 0.61 16.48 16 18 O -0.58 -20.63 12.10 14.61 0.18 -20.45 16 19 C -0.16 -4.00 4.99 29.85 0.15 -3.85 16 20 C 0.18 4.28 0.92 -10.79 -0.01 4.27 16 21 C -0.14 -2.56 7.45 71.98 0.54 -2.03 16 22 O -0.57 -16.60 12.87 -131.33 -1.69 -18.29 16 23 C -0.19 -4.75 4.70 -10.79 -0.05 -4.80 16 24 C -0.17 -3.16 9.57 30.59 0.29 -2.87 16 25 C -0.17 -3.63 9.82 30.59 0.30 -3.33 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.64 5.07 -2.38 -0.01 1.63 16 29 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.04 1.58 6.37 -2.39 -0.02 1.56 16 31 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.54 6.62 -2.38 -0.02 1.53 16 34 H 0.05 2.15 7.46 -2.39 -0.02 2.14 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.88 6.97 -2.39 -0.02 1.86 16 37 H 0.41 14.27 7.83 -92.71 -0.73 13.54 16 38 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.09 1.32 6.84 -2.39 -0.02 1.30 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.21 7.21 -2.39 -0.02 1.19 16 43 H 0.38 11.82 6.52 -74.05 -0.48 11.34 16 44 H 0.09 2.71 6.11 -2.39 -0.01 2.69 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.12 1.76 5.83 -2.38 -0.01 1.74 16 47 H 0.10 2.03 7.62 -2.39 -0.02 2.01 16 48 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -55.22 365.76 2.68 -52.55 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: -0.25 Total: 43.85 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.34 Total: -0.09 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -2.93 Total: -100.53 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.51 Total: -38.75 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -55.22 2.68 -52.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152820654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.302 kcal (2) G-P(sol) polarization free energy of solvation -55.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds