Wall clock time and date at job start Tue Mar 31 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48496 * 109.47049 * 270.00391 * 3 2 1 5 5 H 1.48499 * 109.47067 * 30.00179 * 3 2 1 6 6 H 1.48494 * 109.47270 * 150.00026 * 3 2 1 7 7 C 1.37878 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99962 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99880 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46931 * 185.01491 * 9 7 2 11 11 C 1.46898 * 111.00116 * 295.07687 * 10 9 7 12 12 C 1.53240 * 109.33877 * 187.25511 * 11 10 9 13 13 N 1.47087 * 108.52181 * 306.17084 * 12 11 10 14 14 C 1.34775 * 120.87895 * 231.18788 * 13 12 11 15 15 O 1.21282 * 120.00310 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99789 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.46758 * 40.00529 * 16 14 13 18 18 N 1.46904 * 109.47208 * 160.00181 * 16 14 13 19 19 C 1.53000 * 109.47326 * 280.00280 * 16 14 13 20 20 C 1.53002 * 109.46970 * 174.99920 * 19 16 14 21 21 C 1.53001 * 109.47184 * 180.02562 * 20 19 16 22 22 C 1.52996 * 109.47202 * 180.02562 * 21 20 19 23 23 N 1.46897 * 109.47128 * 180.02562 * 22 21 20 24 24 C 1.47074 * 118.23538 * 51.45943 * 13 12 11 25 25 C 1.46904 * 111.00163 * 59.38501 * 10 9 7 26 26 H 0.96993 * 120.00187 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47551 * 65.01408 * 9 7 2 28 28 H 1.08998 * 109.47106 * 305.01104 * 9 7 2 29 29 H 1.09000 * 109.48998 * 67.29720 * 11 10 9 30 30 H 1.08995 * 109.49414 * 307.21657 * 11 10 9 31 31 H 1.09002 * 109.62604 * 186.46472 * 12 11 10 32 32 H 1.08993 * 109.63184 * 65.87938 * 12 11 10 33 33 H 1.00897 * 111.00013 * 60.00245 * 18 16 14 34 34 H 1.00896 * 110.99435 * 183.95919 * 18 16 14 35 35 H 1.08998 * 109.46928 * 54.99922 * 19 16 14 36 36 H 1.08997 * 109.47283 * 294.99564 * 19 16 14 37 37 H 1.09001 * 109.47116 * 59.99729 * 20 19 16 38 38 H 1.09006 * 109.46992 * 299.99721 * 20 19 16 39 39 H 1.09006 * 109.46667 * 299.99600 * 21 20 19 40 40 H 1.08998 * 109.47083 * 59.99776 * 21 20 19 41 41 H 1.09006 * 109.46721 * 299.99246 * 22 21 20 42 42 H 1.09001 * 109.47369 * 59.99242 * 22 21 20 43 43 H 1.00903 * 111.00714 * 56.03538 * 23 22 21 44 44 H 1.00902 * 111.00487 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.62863 * 68.24970 * 24 13 12 46 46 H 1.09004 * 109.63010 * 188.83019 * 24 13 12 47 47 H 1.09000 * 109.48522 * 292.70434 * 25 10 9 48 48 H 1.08994 * 109.49086 * 52.78237 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2011 -3.6130 0.1222 11 6 3.0772 -3.6886 -1.0545 12 6 3.9254 -4.9624 -0.9746 13 7 4.6213 -4.9798 0.3211 14 6 5.9523 -5.1806 0.3888 15 8 6.5925 -5.3495 -0.6273 16 6 6.6452 -5.1940 1.7270 17 1 6.0229 -5.7172 2.4531 18 7 7.9369 -5.8825 1.6028 19 6 6.8768 -3.7561 2.1959 20 6 7.4662 -3.7688 3.6077 21 6 7.6972 -2.3309 4.0769 22 6 8.2872 -2.3436 5.4885 23 7 8.5085 -0.9631 5.9392 24 6 3.8252 -4.7783 1.5413 25 6 2.9818 -3.5060 1.3620 26 1 -0.4850 0.8400 0.0004 27 1 0.6938 -2.5970 -0.9311 28 1 0.5585 -2.5188 0.8420 29 1 3.7312 -2.8169 -1.0776 30 1 2.4698 -3.7122 -1.9592 31 1 4.6566 -4.9666 -1.7829 32 1 3.2806 -5.8374 -1.0556 33 1 8.5324 -5.4164 0.9348 34 1 8.3921 -5.9616 2.4997 35 1 5.9283 -3.2191 2.2029 36 1 7.5703 -3.2598 1.5171 37 1 8.4147 -4.3059 3.6007 38 1 6.7726 -4.2651 4.2866 39 1 8.3907 -1.8343 3.3981 40 1 6.7486 -1.7942 4.0840 41 1 7.5941 -2.8404 6.1675 42 1 9.2359 -2.8803 5.4810 43 1 7.6551 -0.4266 5.8936 44 1 8.8985 -0.9445 6.8696 45 1 3.1709 -5.6359 1.6973 46 1 4.4901 -4.6609 2.3971 47 1 3.6371 -2.6368 1.3052 48 1 2.3053 -3.3972 2.2096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160484396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:48 Heat of formation + Delta-G solvation = -42.054181 kcal Electronic energy + Delta-G solvation = -25469.031200 eV Core-core repulsion = 21978.984038 eV Total energy + Delta-G solvation = -3490.047162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18908 -37.77316 -36.96445 -35.23499 -34.44520 -32.36320 -32.11108 -30.79256 -28.66790 -28.00154 -25.88094 -24.89364 -23.14261 -22.55325 -21.82930 -21.28277 -20.27443 -18.50893 -17.59879 -16.39757 -16.32844 -16.03902 -15.64424 -15.21133 -15.09702 -14.82476 -14.70003 -14.45383 -14.10733 -14.03823 -13.66165 -13.38324 -13.34697 -12.96244 -12.56312 -12.25256 -11.97601 -11.86227 -11.63741 -11.43672 -11.29688 -11.17858 -11.10706 -11.02587 -10.84883 -10.71271 -10.64690 -10.31427 -9.95317 -9.73637 -9.52472 -9.04746 -8.82954 -8.51182 -8.40526 -7.30690 -6.10947 -4.20584 2.77170 3.12967 3.21641 3.29098 3.31293 4.12001 4.33622 4.43894 4.48533 4.61625 4.72885 4.78005 4.84925 4.94072 5.13580 5.19103 5.19427 5.29643 5.31983 5.45054 5.47639 5.53612 5.59470 5.64090 5.71517 5.86272 5.88026 5.96546 5.97832 6.06794 6.10648 6.37270 6.56237 6.66708 6.72519 6.77637 6.90116 7.07536 7.15553 7.28441 7.42959 7.61441 7.81074 7.91942 8.14172 8.19187 8.36467 8.89203 9.46996 10.94167 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.009870 B = 0.004912 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.136852 B = 5699.025894 C = 7814.779540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.116 3.884 13 N -0.605 5.605 14 C 0.521 3.479 15 O -0.542 6.542 16 C 0.077 3.923 17 H 0.101 0.899 18 N -0.828 5.828 19 C -0.154 4.154 20 C -0.114 4.114 21 C -0.121 4.121 22 C 0.061 3.939 23 N -0.855 5.855 24 C 0.106 3.894 25 C 0.052 3.948 26 H 0.263 0.737 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.350 0.650 34 H 0.344 0.656 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.026 0.974 42 H 0.069 0.931 43 H 0.343 0.657 44 H 0.340 0.660 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.044 0.956 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.998 -8.318 10.426 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.080 4.080 12 C -0.007 4.007 13 N -0.339 5.339 14 C 0.308 3.692 15 O -0.419 6.419 16 C -0.038 4.038 17 H 0.119 0.881 18 N -0.360 5.360 19 C -0.193 4.193 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.069 4.069 23 N -0.385 5.385 24 C -0.018 4.018 25 C -0.078 4.078 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.977 -9.316 9.024 18.347 hybrid contribution 0.428 2.592 1.135 2.862 sum 13.404 -6.723 10.159 18.113 Atomic orbital electron populations 1.69931 1.05992 1.26933 1.49889 1.24942 0.94742 0.99111 0.94788 0.86670 0.79871 0.83667 0.78281 1.20561 1.21058 1.20018 1.21716 0.93215 0.92094 1.52051 0.92665 1.19767 0.90696 0.85311 0.97992 1.62481 1.16930 1.46598 1.00435 1.22255 0.95209 0.95346 0.95152 1.21816 0.95113 0.98863 0.84875 1.48148 1.06578 1.70634 1.08503 1.20377 0.81800 0.76104 0.90892 1.90645 1.64756 1.49739 1.36797 1.21378 0.93170 0.94092 0.95172 0.88070 1.58576 1.05532 1.57523 1.14336 1.22388 1.03111 0.96736 0.97105 1.21530 1.00865 0.97034 0.95837 1.21582 1.01527 0.96660 0.96076 1.21805 0.99807 0.89567 0.95763 1.58695 1.34897 1.13312 1.31548 1.22158 0.94075 0.99509 0.86012 1.22294 0.96171 0.94566 0.94760 0.92722 0.95281 0.94573 0.94099 0.90382 0.89564 0.91347 0.83511 0.84224 0.90201 0.91138 0.91980 0.91550 0.91113 0.91626 0.95557 0.91218 0.84484 0.84758 0.90954 0.90301 0.93799 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.55 -14.59 7.75 -34.44 -0.27 -14.86 16 8 H 0.06 1.47 5.88 -52.49 -0.31 1.16 16 9 C 0.19 4.60 5.11 -4.98 -0.03 4.58 16 10 N -0.54 -10.85 4.83 -235.47 -1.14 -11.98 16 11 C 0.05 0.94 5.24 -3.70 -0.02 0.92 16 12 C 0.12 1.89 6.60 -3.60 -0.02 1.87 16 13 N -0.60 -9.32 3.00 -172.18 -0.52 -9.83 16 14 C 0.52 8.11 6.96 -10.99 -0.08 8.03 16 15 O -0.54 -10.23 15.70 5.56 0.09 -10.15 16 16 C 0.08 0.88 2.35 -68.86 -0.16 0.72 16 17 H 0.10 1.02 6.85 -51.93 -0.36 0.67 16 18 N -0.83 -8.85 8.94 -5.65 -0.05 -8.90 16 19 C -0.15 -1.60 4.51 -26.73 -0.12 -1.72 16 20 C -0.11 -0.91 4.98 -26.73 -0.13 -1.04 16 21 C -0.12 -1.07 5.47 -26.73 -0.15 -1.21 16 22 C 0.06 0.48 6.79 -3.83 -0.03 0.45 16 23 N -0.86 -6.92 9.62 -10.37 -0.10 -7.02 16 24 C 0.11 1.45 5.99 -3.37 -0.02 1.43 16 25 C 0.05 0.90 5.17 -3.46 -0.02 0.88 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.86 6.92 -51.93 -0.36 0.50 16 30 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 31 H 0.09 1.45 7.06 -51.93 -0.37 1.08 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.35 3.97 8.58 -39.29 -0.34 3.63 16 34 H 0.34 2.72 7.55 -39.29 -0.30 2.42 16 35 H 0.08 0.95 6.95 -51.93 -0.36 0.59 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.43 6.87 -51.93 -0.36 0.07 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.34 2.62 8.99 -39.29 -0.35 2.26 16 44 H 0.34 2.14 9.08 -39.29 -0.36 1.78 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 0.87 4.86 -51.93 -0.25 0.61 16 47 H 0.04 0.86 6.79 -51.93 -0.35 0.51 16 48 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -31.05 370.83 -9.80 -40.85 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.26 Total: 8.36 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.13 Total: 1.78 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -1.07 Total: -62.43 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.05 -9.80 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160484396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.199 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds