Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40064 * 126.04513 * 2 1 4 4 C 1.30832 * 108.39067 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.83898 * 179.97438 * 4 3 2 6 6 F 1.39906 * 109.46934 * 4.97147 * 5 4 3 7 7 F 1.39897 * 109.47259 * 124.96917 * 5 4 3 8 8 F 1.39901 * 109.47466 * 244.97423 * 5 4 3 9 9 C 1.39770 * 108.32719 * 359.97438 * 4 3 2 10 10 C 1.35255 * 126.03974 * 180.02562 * 2 1 3 11 11 N 1.39207 * 126.22208 * 359.70746 * 10 2 1 12 12 S 1.65599 * 119.99882 * 180.02562 * 11 10 2 13 13 O 1.42095 * 106.40411 * 178.54202 * 12 11 10 14 14 O 1.42106 * 106.40225 * 311.46345 * 12 11 10 15 15 C 1.76203 * 107.21612 * 65.00185 * 12 11 10 16 16 H 1.07998 * 119.99992 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99781 * 179.97438 * 15 12 11 18 18 N 1.31512 * 120.00090 * 180.02562 * 17 15 12 19 19 Si 1.86803 * 120.00301 * 0.02562 * 17 15 12 20 20 H 1.48499 * 109.47258 * 89.99631 * 19 17 15 21 21 H 1.48495 * 109.47267 * 210.00218 * 19 17 15 22 22 H 1.48502 * 109.46912 * 329.99937 * 19 17 15 23 23 H 1.08993 * 109.47468 * 269.97184 * 1 2 3 24 24 H 1.08995 * 109.47444 * 29.97803 * 1 2 3 25 25 H 1.09005 * 109.47097 * 149.97229 * 1 2 3 26 26 H 1.08003 * 126.10035 * 180.02562 * 9 4 3 27 27 H 0.96998 * 119.99638 * 0.02562 * 11 10 2 28 28 H 0.97006 * 120.00103 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1325 0.0000 4 6 3.5358 0.7357 -0.0006 5 6 4.7471 1.6322 -0.0013 6 9 4.3402 2.9659 0.1130 7 9 5.5722 1.3022 1.0792 8 9 5.4534 1.4610 -1.1968 9 6 3.5523 -0.6619 -0.0003 10 6 2.2607 -1.0937 -0.0005 11 7 1.8366 -2.4196 0.0047 12 16 2.9503 -3.6451 0.0038 13 8 2.2119 -4.8584 0.0445 14 8 3.8844 -3.3378 -1.0220 15 6 3.8331 -3.5486 1.5257 16 1 3.5900 -2.7788 2.2431 17 6 4.8335 -4.4566 1.8012 18 7 5.4920 -4.3849 2.9373 19 14 5.2534 -5.7886 0.5606 20 1 6.3020 -5.2900 -0.3652 21 1 5.7544 -6.9902 1.2750 22 1 4.0376 -6.1445 -0.2142 23 1 -0.3634 -0.0005 1.0276 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 4.4323 -1.2880 -0.0003 27 1 0.8888 -2.6255 0.0087 28 1 6.1961 -5.0235 3.1309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = -141.432878 kcal Electronic energy + Delta-G solvation = -22845.472548 eV Core-core repulsion = 18610.961093 eV Total energy + Delta-G solvation = -4234.511455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 299.034 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.90253 -47.43003 -47.39045 -41.36937 -36.05193 -35.19249 -34.80701 -33.40628 -33.18214 -28.85744 -28.17596 -26.58908 -25.09528 -21.55057 -20.98052 -19.24175 -18.57092 -18.27964 -18.08979 -17.72862 -16.79309 -16.38611 -15.75752 -15.23301 -15.00418 -14.38835 -14.25578 -14.19881 -13.82160 -13.72175 -13.54372 -13.54017 -13.39606 -13.10291 -12.90755 -12.74477 -12.09720 -11.98258 -11.63297 -11.53490 -11.07633 -10.98235 -10.79989 -10.71262 -10.08514 -9.34300 -9.32737 -9.12324 -8.05079 -6.92599 -5.51717 1.39394 1.68528 2.14773 2.60956 2.92093 2.98588 3.08631 3.14915 3.65253 3.83123 3.86083 4.20450 4.45019 4.61507 4.63013 4.91482 5.00990 5.16047 5.26578 5.39206 5.54431 5.76343 6.14161 6.55471 6.63009 7.22388 7.33630 7.46069 8.07728 8.54376 10.18899 Molecular weight = 299.03amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.006651 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.685946 B = 4209.018144 C = 5148.570773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.374 5.374 3 N -0.250 5.250 4 C 0.007 3.993 5 C 0.558 3.442 6 F -0.172 7.172 7 F -0.161 7.161 8 F -0.166 7.166 9 C -0.259 4.259 10 C 0.363 3.637 11 N -1.030 6.030 12 S 2.662 3.338 13 O -0.988 6.988 14 O -0.984 6.984 15 C -1.009 5.009 16 H 0.128 0.872 17 C 0.156 3.844 18 N -0.810 5.810 19 Si 0.799 3.201 20 H -0.242 1.242 21 H -0.252 1.252 22 H -0.223 1.223 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.183 0.817 27 H 0.418 0.582 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 8.471 -4.531 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.163 5.163 3 N -0.075 5.075 4 C -0.159 4.159 5 C 0.502 3.498 6 F -0.153 7.153 7 F -0.143 7.143 8 F -0.147 7.147 9 C -0.293 4.293 10 C 0.139 3.861 11 N -0.774 5.774 12 S 2.764 3.236 13 O -0.978 6.978 14 O -0.973 6.973 15 C -1.144 5.144 16 H 0.146 0.854 17 C -0.065 4.065 18 N -0.438 5.438 19 Si 0.618 3.382 20 H -0.165 1.165 21 H -0.176 1.176 22 H -0.145 1.145 23 H 0.100 0.900 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.200 0.800 27 H 0.251 0.749 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.387 8.776 -5.126 12.564 hybrid contribution 0.454 -1.093 0.339 1.231 sum -6.933 7.682 -4.787 11.401 Atomic orbital electron populations 1.21942 0.73642 1.04824 1.04006 1.48428 1.06525 1.02099 1.59282 1.77312 0.99559 1.05778 1.24856 1.21579 0.92792 0.94041 1.07477 1.16827 0.81327 0.77357 0.74299 1.93204 1.90453 1.35885 1.95754 1.93268 1.73452 1.92314 1.55235 1.93240 1.79876 1.95223 1.46401 1.20936 0.96458 0.93190 1.18695 1.17416 0.89831 0.80646 0.98218 1.53723 1.23091 1.13871 1.86697 1.02211 0.73206 0.70628 0.77572 1.93529 1.73318 1.41412 1.89540 1.93478 1.60445 1.83158 1.60236 1.30094 1.32923 1.27131 1.24251 0.85409 1.24361 0.92375 0.95079 0.94675 1.69964 1.18610 1.34001 1.21272 0.87904 0.84238 0.83032 0.82982 1.16526 1.17580 1.14497 0.90036 0.88505 0.89422 0.79971 0.74857 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 11.28 59.85 0.67 1.59 15 2 N -0.37 -5.74 4.02 -67.24 -0.27 -6.01 15 3 N -0.25 -4.25 12.34 33.65 0.42 -3.83 15 4 C 0.01 0.13 6.50 -82.45 -0.54 -0.41 15 5 C 0.56 9.15 3.50 36.01 0.13 9.28 15 6 F -0.17 -2.63 17.14 2.25 0.04 -2.59 15 7 F -0.16 -2.73 17.30 2.25 0.04 -2.69 15 8 F -0.17 -2.68 17.30 2.25 0.04 -2.64 15 9 C -0.26 -5.17 9.20 -39.75 -0.37 -5.53 15 10 C 0.36 6.58 7.58 -153.40 -1.16 5.42 15 11 N -1.03 -18.20 5.87 31.11 0.18 -18.02 15 12 S 2.66 61.22 3.79 -107.50 -0.41 60.81 15 13 O -0.99 -24.10 16.02 -57.17 -0.92 -25.02 15 14 O -0.98 -24.19 15.03 -57.17 -0.86 -25.05 15 15 C -1.01 -26.20 9.49 30.60 0.29 -25.91 15 16 H 0.13 3.40 8.06 -52.49 -0.42 2.98 15 17 C 0.16 4.22 5.47 -17.82 -0.10 4.13 15 18 N -0.81 -22.21 13.96 55.43 0.77 -21.44 15 19 Si 0.80 19.26 26.54 -169.99 -4.51 14.75 15 20 H -0.24 -5.70 7.11 56.52 0.40 -5.29 15 21 H -0.25 -5.60 7.11 56.52 0.40 -5.20 15 22 H -0.22 -5.42 5.61 56.52 0.32 -5.10 15 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.10 0.74 8.14 -51.93 -0.42 0.31 15 25 H 0.09 0.63 7.50 -51.93 -0.39 0.24 15 26 H 0.18 3.93 6.48 -52.48 -0.34 3.59 15 27 H 0.42 5.60 8.09 -34.47 -0.28 5.32 15 28 H 0.28 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -31.35 276.85 -3.87 -35.22 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -1.50 Total: 3.77 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.07 Total: -11.45 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 1.10 Total: -49.30 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -1.77 Total: -50.06 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.12 Total: -7.92 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.51 Total: 14.75 kcal Atomic # 16 Polarization: 61.22 SS G_CDS: -0.41 Total: 60.81 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.35 -3.87 -35.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.210 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds