Wall clock time and date at job start Tue Mar 31 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40064 * 126.04513 * 2 1 4 4 C 1.30832 * 108.39067 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.83898 * 179.97438 * 4 3 2 6 6 F 1.39906 * 109.46934 * 4.97147 * 5 4 3 7 7 F 1.39897 * 109.47259 * 124.96917 * 5 4 3 8 8 F 1.39901 * 109.47466 * 244.97423 * 5 4 3 9 9 C 1.39770 * 108.32719 * 359.97438 * 4 3 2 10 10 C 1.35255 * 126.03974 * 180.02562 * 2 1 3 11 11 N 1.39207 * 126.22208 * 359.70746 * 10 2 1 12 12 S 1.65599 * 119.99882 * 180.02562 * 11 10 2 13 13 O 1.42095 * 106.40411 * 178.54202 * 12 11 10 14 14 O 1.42106 * 106.40225 * 311.46345 * 12 11 10 15 15 C 1.76203 * 107.21612 * 65.00185 * 12 11 10 16 16 H 1.07998 * 119.99992 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99781 * 179.97438 * 15 12 11 18 18 N 1.31512 * 120.00090 * 180.02562 * 17 15 12 19 19 Si 1.86803 * 120.00301 * 0.02562 * 17 15 12 20 20 H 1.48499 * 109.47258 * 89.99631 * 19 17 15 21 21 H 1.48495 * 109.47267 * 210.00218 * 19 17 15 22 22 H 1.48502 * 109.46912 * 329.99937 * 19 17 15 23 23 H 1.08993 * 109.47468 * 269.97184 * 1 2 3 24 24 H 1.08995 * 109.47444 * 29.97803 * 1 2 3 25 25 H 1.09005 * 109.47097 * 149.97229 * 1 2 3 26 26 H 1.08003 * 126.10035 * 180.02562 * 9 4 3 27 27 H 0.96998 * 119.99638 * 0.02562 * 11 10 2 28 28 H 0.97006 * 120.00103 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1325 0.0000 4 6 3.5358 0.7357 -0.0006 5 6 4.7471 1.6322 -0.0013 6 9 4.3402 2.9659 0.1130 7 9 5.5722 1.3022 1.0792 8 9 5.4534 1.4610 -1.1968 9 6 3.5523 -0.6619 -0.0003 10 6 2.2607 -1.0937 -0.0005 11 7 1.8366 -2.4196 0.0047 12 16 2.9503 -3.6451 0.0038 13 8 2.2119 -4.8584 0.0445 14 8 3.8844 -3.3378 -1.0220 15 6 3.8331 -3.5486 1.5257 16 1 3.5900 -2.7788 2.2431 17 6 4.8335 -4.4566 1.8012 18 7 5.4920 -4.3849 2.9373 19 14 5.2534 -5.7886 0.5606 20 1 6.3020 -5.2900 -0.3652 21 1 5.7544 -6.9902 1.2750 22 1 4.0376 -6.1445 -0.2142 23 1 -0.3634 -0.0005 1.0276 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 4.4323 -1.2880 -0.0003 27 1 0.8888 -2.6255 0.0087 28 1 6.1961 -5.0235 3.1309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:14 Heat of formation + Delta-G solvation = -165.351086 kcal Electronic energy + Delta-G solvation = -22846.509719 eV Core-core repulsion = 18610.961093 eV Total energy + Delta-G solvation = -4235.548627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 299.034 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.21264 -48.72260 -48.71289 -42.72029 -37.95449 -36.75468 -36.64323 -35.20638 -34.59313 -30.26291 -29.35010 -28.59992 -26.27792 -23.01241 -22.33340 -21.00817 -19.97918 -19.70922 -19.59473 -19.30489 -18.60638 -17.62725 -17.22277 -16.89258 -16.44469 -16.14790 -15.58430 -15.55256 -15.49286 -15.12849 -15.01270 -14.87004 -14.85337 -14.76502 -13.96372 -13.83769 -13.65540 -13.46669 -13.31066 -13.16366 -12.95782 -12.84899 -12.66909 -12.22729 -11.92406 -11.33370 -11.24375 -10.41353 -9.52534 -8.95693 -7.56137 -0.36672 0.32963 0.89759 1.08340 1.13238 1.18102 1.21961 1.58179 1.89518 2.12971 2.42475 2.52925 2.85550 3.07195 3.29423 3.56204 3.73528 3.90676 4.11372 4.35777 4.43204 4.61910 4.64639 5.09922 5.29477 5.37725 5.92093 6.01032 6.11963 6.51323 8.21298 Molecular weight = 299.03amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.006651 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.685946 B = 4209.018144 C = 5148.570773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.357 5.357 3 N -0.244 5.244 4 C -0.003 4.003 5 C 0.564 3.436 6 F -0.163 7.163 7 F -0.167 7.167 8 F -0.165 7.165 9 C -0.291 4.291 10 C 0.355 3.645 11 N -1.014 6.014 12 S 2.695 3.305 13 O -1.000 7.000 14 O -1.000 7.000 15 C -1.027 5.027 16 H 0.109 0.891 17 C 0.114 3.886 18 N -0.845 5.845 19 Si 0.821 3.179 20 H -0.237 1.237 21 H -0.221 1.221 22 H -0.225 1.225 23 H 0.102 0.898 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.158 0.842 27 H 0.439 0.561 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.458 8.659 -5.305 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.146 5.146 3 N -0.070 5.070 4 C -0.169 4.169 5 C 0.507 3.493 6 F -0.144 7.144 7 F -0.148 7.148 8 F -0.146 7.146 9 C -0.325 4.325 10 C 0.130 3.870 11 N -0.764 5.764 12 S 2.794 3.206 13 O -0.990 6.990 14 O -0.990 6.990 15 C -1.161 5.161 16 H 0.128 0.872 17 C -0.104 4.104 18 N -0.474 5.474 19 Si 0.637 3.363 20 H -0.160 1.160 21 H -0.143 1.143 22 H -0.147 1.147 23 H 0.120 0.880 24 H 0.138 0.862 25 H 0.133 0.867 26 H 0.176 0.824 27 H 0.277 0.723 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.006 8.964 -5.876 14.000 hybrid contribution 0.823 -1.032 0.595 1.448 sum -8.183 7.932 -5.281 12.561 Atomic orbital electron populations 1.22597 0.69962 1.07406 1.06215 1.48853 1.08238 1.00480 1.57077 1.77261 0.99265 1.06458 1.24054 1.21649 0.93590 0.93498 1.08142 1.16673 0.80913 0.77514 0.74167 1.93218 1.90348 1.35128 1.95712 1.93256 1.73599 1.92427 1.55568 1.93239 1.79822 1.95259 1.46308 1.20894 0.96798 0.94125 1.20692 1.17272 0.89980 0.81141 0.98639 1.52984 1.23713 1.13072 1.86605 1.01060 0.72904 0.70724 0.75881 1.93509 1.73481 1.42609 1.89361 1.93457 1.61797 1.83707 1.60017 1.30554 1.33491 1.26390 1.25653 0.87241 1.25075 0.92563 0.96792 0.95972 1.69997 1.19563 1.35306 1.22539 0.87555 0.84255 0.82540 0.81929 1.15992 1.14304 1.14748 0.87979 0.86223 0.86720 0.82422 0.72263 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 11.28 127.77 1.44 2.58 15 2 N -0.36 -10.08 4.02 -366.65 -1.47 -11.55 15 3 N -0.24 -7.88 12.34 -47.45 -0.59 -8.46 15 4 C 0.00 -0.11 6.50 43.08 0.28 0.17 15 5 C 0.56 18.32 3.50 71.24 0.25 18.57 15 6 F -0.16 -4.81 17.14 44.97 0.77 -4.04 15 7 F -0.17 -5.72 17.30 44.97 0.78 -4.94 15 8 F -0.16 -5.28 17.30 44.97 0.78 -4.50 15 9 C -0.29 -11.63 9.20 22.16 0.20 -11.43 15 10 C 0.35 12.40 7.58 131.43 1.00 13.39 15 11 N -1.01 -34.16 5.87 -55.50 -0.33 -34.49 15 12 S 2.69 121.92 3.79 -56.49 -0.21 121.70 15 13 O -1.00 -47.32 16.02 -128.00 -2.05 -49.37 15 14 O -1.00 -48.79 15.03 -128.00 -1.92 -50.71 15 15 C -1.03 -53.99 9.49 67.73 0.64 -53.35 15 16 H 0.11 6.00 8.06 -2.91 -0.02 5.97 15 17 C 0.11 6.20 5.47 84.65 0.46 6.67 15 18 N -0.84 -46.83 13.96 21.45 0.30 -46.53 15 19 Si 0.82 38.37 26.54 68.60 1.82 40.19 15 20 H -0.24 -10.80 7.11 99.48 0.71 -10.09 15 21 H -0.22 -9.17 7.11 99.48 0.71 -8.46 15 22 H -0.23 -10.58 5.61 99.48 0.56 -10.03 15 23 H 0.10 1.19 8.14 -2.39 -0.02 1.17 15 24 H 0.12 1.31 8.14 -2.39 -0.02 1.29 15 25 H 0.11 1.13 7.50 -2.38 -0.02 1.11 15 26 H 0.16 7.05 6.48 -2.91 -0.02 7.03 15 27 H 0.44 10.55 8.09 -96.75 -0.78 9.76 15 28 H 0.29 14.63 8.31 -92.70 -0.77 13.86 15 Total: -1.00 -66.97 276.85 2.47 -64.50 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.32 Total: 11.62 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.28 Total: -23.40 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -2.09 Total: -101.04 kcal Atomic # 8 Polarization: -96.11 SS G_CDS: -3.97 Total: -100.08 kcal Atomic # 9 Polarization: -15.81 SS G_CDS: 2.33 Total: -13.49 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.82 Total: 40.19 kcal Atomic # 16 Polarization: 121.92 SS G_CDS: -0.21 Total: 121.70 kcal Total: -66.97 2.47 -64.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.848 kcal (2) G-P(sol) polarization free energy of solvation -66.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds