Wall clock time and date at job start Tue Mar 31 2020 03:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 C 1.52997 * 109.47007 * 298.96669 * 3 2 1 5 5 C 1.52998 * 109.47011 * 295.40934 * 4 3 2 6 6 C 1.53005 * 109.46799 * 58.96524 * 3 2 1 7 7 H 1.09001 * 109.46818 * 299.99720 * 6 3 2 8 8 C 1.53000 * 109.47143 * 59.99909 * 6 3 2 9 9 C 1.50703 * 109.46764 * 180.02562 * 6 3 2 10 10 O 1.21279 * 120.00210 * 359.97438 * 9 6 3 11 11 N 1.34772 * 119.99501 * 179.97438 * 9 6 3 12 12 C 1.46500 * 119.99870 * 179.97438 * 11 9 6 13 13 H 1.09002 * 110.88778 * 37.42691 * 12 11 9 14 14 C 1.54907 * 111.00632 * 273.54627 * 12 11 9 15 15 N 1.47423 * 104.83031 * 204.91374 * 14 12 11 16 16 C 1.36945 * 125.64590 * 204.09033 * 15 14 12 17 17 H 1.08000 * 119.99905 * 23.02673 * 16 15 14 18 18 C 1.38813 * 119.99944 * 203.03430 * 16 15 14 19 19 N 1.31617 * 119.99694 * 218.52741 * 18 16 15 20 20 Si 1.86798 * 120.00184 * 38.51988 * 18 16 15 21 21 H 1.48498 * 109.47185 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47124 * 240.00083 * 20 18 16 23 23 H 1.48496 * 109.46866 * 120.00081 * 20 18 16 24 24 C 1.47012 * 108.70752 * 24.35679 * 15 14 12 25 25 C 1.54341 * 107.26318 * 358.58522 * 24 15 14 26 26 H 1.09001 * 110.66531 * 96.52178 * 25 24 15 27 27 O 1.42905 * 110.84689 * 219.67168 * 25 24 15 28 28 H 1.09005 * 109.46735 * 301.56865 * 1 2 3 29 29 H 1.08994 * 109.47355 * 61.57129 * 1 2 3 30 30 H 1.09004 * 109.47158 * 181.57206 * 1 2 3 31 31 H 1.09002 * 109.47167 * 239.99966 * 2 1 3 32 32 H 1.08999 * 109.47294 * 120.00192 * 2 1 3 33 33 H 1.09001 * 109.47207 * 178.96006 * 3 2 1 34 34 H 1.08997 * 109.47430 * 55.41101 * 4 3 2 35 35 H 1.09003 * 109.46829 * 175.41363 * 4 3 2 36 36 H 1.09004 * 109.47539 * 185.41159 * 5 4 3 37 37 H 1.09003 * 109.47375 * 305.41456 * 5 4 3 38 38 H 1.09002 * 109.47198 * 65.40843 * 5 4 3 39 39 H 1.09004 * 109.46873 * 179.97438 * 8 6 3 40 40 H 1.08997 * 109.47480 * 299.99821 * 8 6 3 41 41 H 1.09004 * 109.46700 * 60.00267 * 8 6 3 42 42 H 0.97000 * 120.00618 * 0.02562 * 11 9 6 43 43 H 1.08999 * 110.36643 * 86.07824 * 14 12 11 44 44 H 1.09003 * 110.46016 * 323.80146 * 14 12 11 45 45 H 0.96998 * 120.00485 * 5.08243 * 19 18 16 46 46 H 1.09000 * 109.88507 * 118.12698 * 24 15 14 47 47 H 1.08999 * 109.88880 * 239.29233 * 24 15 14 48 48 H 0.96695 * 113.99828 * 293.68893 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5514 2.1562 -1.2620 5 6 2.1745 1.4972 -2.4942 6 6 1.5088 2.1712 1.2361 7 1 0.4190 2.1712 1.2174 8 6 1.9974 1.4575 2.4981 9 6 2.0107 3.5922 1.2357 10 8 2.7234 3.9834 0.3358 11 7 1.6674 4.4282 2.2356 12 6 2.1557 5.8095 2.2356 13 1 2.1789 6.2135 1.2235 14 6 3.5500 5.9055 2.9038 15 7 3.6428 7.2959 3.3849 16 6 4.8037 7.9854 3.6139 17 1 5.7150 7.6888 3.1159 18 6 4.8091 9.0653 4.4860 19 7 5.5298 10.1312 4.2090 20 14 3.7933 9.0059 6.0525 21 1 3.0788 7.7064 6.1302 22 1 2.8056 10.1147 6.0444 23 1 4.6886 9.1490 7.2286 24 6 2.2830 7.8177 3.5844 25 6 1.2993 6.7021 3.1721 26 1 0.9684 6.1392 4.0449 27 8 0.1801 7.2452 2.4688 28 1 -0.3633 0.5380 0.8756 29 1 -0.3634 0.4892 -0.9037 30 1 -0.3634 -1.0273 0.0282 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.1299 1.4426 0.0187 34 1 0.4654 2.0853 -1.3222 35 1 1.8454 3.2051 -1.2232 36 1 1.9038 2.0636 -3.3853 37 1 3.2594 1.4823 -2.3888 38 1 1.8045 0.4761 -2.5864 39 1 1.6193 1.9769 3.3787 40 1 1.6341 0.4298 2.4981 41 1 3.0873 1.4576 2.5167 42 1 1.0977 4.1153 2.9555 43 1 4.3347 5.7032 2.1749 44 1 3.6208 5.2093 3.7395 45 1 5.9984 10.1932 3.3620 46 1 2.1351 8.0761 4.6329 47 1 2.1274 8.6964 2.9585 48 1 -0.3875 7.8110 3.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194309024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:09 Heat of formation + Delta-G solvation = -103.450424 kcal Electronic energy + Delta-G solvation = -25713.618625 eV Core-core repulsion = 22188.616370 eV Total energy + Delta-G solvation = -3525.002254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.47284 -39.92582 -38.07886 -36.80769 -35.65859 -34.22924 -33.18991 -31.79341 -30.26113 -29.16562 -27.39374 -26.13894 -25.09470 -23.64881 -22.58020 -22.06777 -21.38621 -19.92904 -19.61012 -18.59284 -18.20021 -17.60643 -16.59109 -16.42655 -16.29758 -16.09111 -15.62637 -15.24778 -14.89218 -14.68528 -14.48097 -14.32813 -14.21323 -13.90112 -13.77978 -13.56169 -13.27656 -13.25450 -13.11388 -12.92315 -12.72114 -12.67910 -12.49600 -12.15472 -12.01387 -11.80698 -11.75711 -11.44622 -11.29355 -11.22110 -11.11119 -11.05958 -10.59736 -10.49232 -10.09773 -9.17945 -8.75481 -5.50433 1.42379 1.52693 1.66102 1.71931 2.07062 2.52889 2.81632 3.01066 3.39580 3.57730 3.67503 3.78534 3.89579 3.91470 3.98112 4.18132 4.26134 4.38619 4.40478 4.42232 4.45202 4.55176 4.61558 4.69781 4.71358 4.80266 4.85590 4.93173 4.95554 4.96621 5.02204 5.08024 5.10685 5.16601 5.29852 5.33129 5.37628 5.42574 5.49808 5.56113 5.64899 5.74448 6.06179 6.57156 6.72381 6.81674 7.30748 7.40909 8.10239 8.65904 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.025163 B = 0.003480 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.494632 B = 8043.160981 C = 8209.563787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.065 4.065 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.097 4.097 7 H 0.122 0.878 8 C -0.144 4.144 9 C 0.509 3.491 10 O -0.577 6.577 11 N -0.703 5.703 12 C 0.155 3.845 13 H 0.068 0.932 14 C 0.126 3.874 15 N -0.616 5.616 16 C -0.355 4.355 17 H 0.027 0.973 18 C -0.047 4.047 19 N -0.923 5.923 20 Si 1.085 2.915 21 H -0.251 1.251 22 H -0.279 1.279 23 H -0.293 1.293 24 C 0.092 3.908 25 C 0.107 3.893 26 H 0.109 0.891 27 O -0.564 6.564 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.417 0.583 43 H 0.019 0.981 44 H 0.043 0.957 45 H 0.254 0.746 46 H 0.043 0.957 47 H 0.027 0.973 48 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 -22.187 -2.776 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.084 4.084 4 C -0.172 4.172 5 C -0.202 4.202 6 C -0.118 4.118 7 H 0.140 0.860 8 C -0.202 4.202 9 C 0.298 3.702 10 O -0.456 6.456 11 N -0.355 5.355 12 C 0.048 3.952 13 H 0.087 0.913 14 C 0.000 4.000 15 N -0.345 5.345 16 C -0.483 4.483 17 H 0.045 0.955 18 C -0.246 4.246 19 N -0.561 5.561 20 Si 0.908 3.092 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.220 1.220 24 C -0.034 4.034 25 C 0.047 3.953 26 H 0.127 0.873 27 O -0.372 6.372 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.038 0.962 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -16.935 -21.382 -2.546 27.395 hybrid contribution 1.088 0.209 -1.097 1.559 sum -15.847 -21.173 -3.643 26.697 Atomic orbital electron populations 1.21904 0.95047 1.02180 1.02244 1.21596 0.96836 0.94137 1.02723 1.20957 0.99357 0.95423 0.92662 1.21817 1.00427 1.00313 0.94645 1.21726 1.00139 1.01032 0.97303 1.21462 1.03238 0.88650 0.98449 0.85989 1.21874 1.01252 1.02146 0.94898 1.21537 0.79368 0.88873 0.80427 1.90661 1.38954 1.78559 1.37422 1.45732 1.52533 1.10179 1.27073 1.21623 0.92354 0.82264 0.98989 0.91344 1.21965 0.95108 0.86967 0.95965 1.44480 1.01237 1.09679 1.79059 1.19594 0.88652 1.13824 1.26201 0.95476 1.27331 1.01609 0.91208 1.04449 1.70982 1.33775 1.25249 1.26087 0.83639 0.75164 0.77007 0.73419 1.17606 1.20481 1.22031 1.22424 0.85091 0.96813 0.99053 1.22830 0.85616 0.92680 0.94156 0.87305 1.86491 1.38924 1.69412 1.42417 0.91722 0.92878 0.91892 0.91548 0.90609 0.93066 0.91269 0.92869 0.93320 0.94080 0.91220 0.90711 0.88726 0.93590 0.74532 0.96229 0.93956 0.93744 0.93952 0.95489 0.74826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.21 71.98 0.66 -0.97 16 2 C -0.12 -1.50 5.10 30.59 0.16 -1.34 16 3 C -0.06 -1.26 1.39 -10.79 -0.02 -1.28 16 4 C -0.13 -3.01 4.93 30.59 0.15 -2.86 16 5 C -0.14 -2.90 9.52 71.98 0.69 -2.22 16 6 C -0.10 -1.74 1.94 -11.54 -0.02 -1.76 16 7 H 0.12 1.63 6.37 -2.39 -0.02 1.62 16 8 C -0.14 -1.96 8.74 71.98 0.63 -1.33 16 9 C 0.51 14.20 6.83 87.66 0.60 14.80 16 10 O -0.58 -21.97 13.41 -3.03 -0.04 -22.01 16 11 N -0.70 -18.13 5.12 -435.97 -2.23 -20.37 16 12 C 0.15 5.43 3.04 46.38 0.14 5.57 16 13 H 0.07 2.92 7.73 -2.39 -0.02 2.90 16 14 C 0.13 5.45 6.93 86.85 0.60 6.05 16 15 N -0.62 -31.11 3.11 -691.98 -2.15 -33.26 16 16 C -0.36 -21.38 10.21 84.03 0.86 -20.52 16 17 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 18 C -0.05 -2.82 5.24 84.86 0.44 -2.37 16 19 N -0.92 -58.85 13.70 21.65 0.30 -58.56 16 20 Si 1.08 50.62 26.24 68.60 1.80 52.42 16 21 H -0.25 -10.36 6.36 99.48 0.63 -9.72 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 24 C 0.09 3.80 5.83 86.74 0.51 4.31 16 25 C 0.11 3.26 3.95 31.79 0.13 3.38 16 26 H 0.11 2.47 7.99 -2.39 -0.02 2.45 16 27 O -0.56 -15.21 13.39 -148.98 -2.00 -17.20 16 28 H 0.06 0.58 6.32 -2.38 -0.02 0.56 16 29 H 0.05 0.62 6.44 -2.39 -0.02 0.61 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.07 0.87 6.63 -2.39 -0.02 0.85 16 32 H 0.08 0.82 6.49 -2.39 -0.02 0.80 16 33 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 34 H 0.07 1.32 6.26 -2.39 -0.01 1.31 16 35 H 0.05 1.62 5.42 -2.39 -0.01 1.61 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.10 6.80 -2.39 -0.02 1.08 16 39 H 0.07 0.81 7.57 -2.39 -0.02 0.79 16 40 H 0.09 0.86 6.45 -2.39 -0.02 0.84 16 41 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.42 7.29 7.93 -92.71 -0.74 6.56 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 46 H 0.04 1.70 4.07 -2.39 -0.01 1.69 16 47 H 0.03 1.23 8.05 -2.39 -0.02 1.21 16 48 H 0.40 6.74 9.12 -74.06 -0.68 6.07 16 Total: -1.00 -79.02 361.79 0.65 -78.38 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -0.55 Total: 21.13 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.52 Total: -0.53 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -4.09 Total: -112.18 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -2.04 Total: -39.21 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 1.80 Total: 52.42 kcal Total: -79.02 0.65 -78.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194309024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.074 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds