Wall clock time and date at job start Tue Mar 31 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 C 1.53008 * 109.47295 * 183.78389 * 3 2 1 5 5 H 1.09002 * 109.46788 * 54.61842 * 4 3 2 6 6 C 1.50698 * 109.47395 * 174.62286 * 4 3 2 7 7 O 1.21281 * 119.99836 * 26.29709 * 6 4 3 8 8 N 1.34776 * 120.00245 * 206.29706 * 6 4 3 9 9 C 1.46494 * 120.00020 * 174.04666 * 8 6 4 10 10 H 1.08999 * 110.63891 * 31.86402 * 9 8 6 11 11 C 1.54332 * 111.00659 * 268.77944 * 9 8 6 12 12 N 1.47011 * 107.26760 * 219.60640 * 11 9 8 13 13 C 1.36944 * 125.64918 * 178.84982 * 12 11 9 14 14 H 1.08000 * 119.99351 * 345.15088 * 13 12 11 15 15 C 1.38805 * 120.00201 * 165.14994 * 13 12 11 16 16 N 1.31621 * 120.00105 * 359.07542 * 15 13 12 17 17 Si 1.86801 * 120.00065 * 179.07948 * 15 13 12 18 18 H 1.48505 * 109.46779 * 265.01823 * 17 15 13 19 19 H 1.48500 * 109.47290 * 145.02133 * 17 15 13 20 20 H 1.48495 * 109.47099 * 25.01683 * 17 15 13 21 21 C 1.47425 * 108.70458 * 358.58267 * 12 11 9 22 22 C 1.54907 * 104.83066 * 24.35898 * 21 12 11 23 23 H 1.09001 * 111.00633 * 81.06506 * 22 21 12 24 24 O 1.42897 * 111.00224 * 204.87774 * 22 21 12 25 25 C 1.52998 * 109.47045 * 294.62509 * 4 3 2 26 26 C 1.53000 * 109.47336 * 175.77548 * 25 4 3 27 27 C 1.53004 * 109.47094 * 295.77531 * 25 4 3 28 28 H 1.08995 * 109.47560 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46939 * 300.00342 * 1 2 3 30 30 H 1.09006 * 109.47031 * 59.99651 * 1 2 3 31 31 H 1.09004 * 109.46939 * 239.99658 * 2 1 3 32 32 H 1.08996 * 109.47061 * 120.00328 * 2 1 3 33 33 H 1.08997 * 109.47118 * 63.78359 * 3 2 1 34 34 H 1.08999 * 109.47182 * 303.78209 * 3 2 1 35 35 H 0.97001 * 119.99505 * 354.04683 * 8 6 4 36 36 H 1.08994 * 109.98977 * 100.12271 * 11 9 8 37 37 H 1.09004 * 109.77267 * 338.96366 * 11 9 8 38 38 H 0.96999 * 119.99906 * 179.97438 * 16 15 13 39 39 H 1.09005 * 110.36834 * 143.20018 * 21 12 11 40 40 H 1.08998 * 110.36896 * 265.51910 * 21 12 11 41 41 H 0.96706 * 114.00054 * 298.54683 * 24 22 21 42 42 H 1.09004 * 109.47216 * 55.76971 * 25 4 3 43 43 H 1.08999 * 109.46524 * 298.31997 * 26 25 4 44 44 H 1.09000 * 109.47149 * 58.31713 * 26 25 4 45 45 H 1.09000 * 109.47115 * 178.31928 * 26 25 4 46 46 H 1.09003 * 109.47239 * 65.18361 * 27 25 4 47 47 H 1.09000 * 109.47048 * 185.18510 * 27 25 4 48 48 H 1.09000 * 109.46698 * 305.18566 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5671 1.4435 -0.0952 5 1 3.8771 0.8672 -0.9670 6 6 4.0612 2.8609 -0.2282 7 8 3.4012 3.7772 0.2143 8 7 5.2365 3.1104 -0.8388 9 6 5.6554 4.4926 -1.0846 10 1 5.2823 5.1521 -0.3011 11 6 5.1801 4.9765 -2.4708 12 7 6.2669 5.7804 -3.0486 13 6 6.2510 6.3747 -4.2823 14 1 5.5098 6.0842 -5.0120 15 6 7.1876 7.3504 -4.5947 16 7 8.0795 7.7174 -3.6990 17 14 7.1821 8.1428 -6.2863 18 1 8.1470 7.4364 -7.1669 19 1 7.5749 9.5698 -6.1659 20 1 5.8202 8.0518 -6.8711 21 6 7.3740 5.8463 -2.0774 22 6 7.2003 4.5870 -1.1922 23 1 7.6125 3.7049 -1.6823 24 8 7.7933 4.7791 0.0937 25 6 4.1572 0.8141 1.1683 26 6 5.6778 0.7189 1.0283 27 6 3.8100 1.6813 2.3801 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7331 1.9363 0.9219 34 1 1.6224 1.9755 -0.8541 35 1 5.8050 2.3748 -1.1155 36 1 4.2832 5.5868 -2.3651 37 1 4.9736 4.1182 -3.1102 38 1 8.7342 8.3990 -3.9175 39 1 8.3337 5.8178 -2.5936 40 1 7.2946 6.7493 -1.4722 41 1 8.7465 4.9404 0.0671 42 1 3.7417 -0.1843 1.3050 43 1 5.9253 0.0769 0.1829 44 1 6.0904 1.7140 0.8618 45 1 6.1011 0.2981 1.9403 46 1 2.7310 1.6741 2.5347 47 1 4.3066 1.2841 3.2654 48 1 4.1449 2.7033 2.2033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196518572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:26 Heat of formation + Delta-G solvation = -86.353253 kcal Electronic energy + Delta-G solvation = -25725.244532 eV Core-core repulsion = 22200.983667 eV Total energy + Delta-G solvation = -3524.260865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27408 -38.16848 -36.53194 -35.06775 -34.22434 -33.71099 -31.69586 -29.64753 -28.40467 -27.37119 -26.89613 -24.95702 -24.01783 -22.04971 -21.14919 -20.68091 -19.97042 -19.10878 -17.13126 -16.98194 -16.52323 -15.88515 -15.63478 -15.28276 -14.79705 -14.23922 -14.15139 -13.86925 -13.68616 -13.37882 -13.27397 -13.10905 -12.88295 -12.46837 -12.24202 -12.12039 -12.05022 -11.92525 -11.62749 -11.46799 -11.26174 -11.20851 -11.08558 -10.98277 -10.88903 -10.84182 -10.64265 -10.44108 -10.18290 -9.96431 -9.81024 -9.58488 -9.23906 -8.68432 -8.66782 -6.86869 -5.82227 -3.19178 2.88250 3.34529 3.39178 3.42161 3.44387 4.39289 4.52029 4.59670 4.61535 4.72668 4.91409 4.94215 5.07514 5.15186 5.29403 5.35950 5.39552 5.42405 5.52274 5.61209 5.62443 5.64472 5.65899 5.72987 5.73800 5.83054 5.85883 5.87080 5.95739 6.01207 6.10709 6.12954 6.16625 6.17285 6.26454 6.39140 6.52466 6.68481 6.96330 7.25711 7.46022 7.67595 7.78311 8.07706 8.18732 8.50170 9.10506 9.71147 10.37699 11.30170 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.003594 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.123765 B = 7789.165416 C = 8714.932392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.104 4.104 5 H 0.088 0.912 6 C 0.522 3.478 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.141 3.859 10 H 0.102 0.898 11 C 0.129 3.871 12 N -0.598 5.598 13 C -0.232 4.232 14 H 0.078 0.922 15 C -0.004 4.004 16 N -0.919 5.919 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.150 3.850 22 C 0.065 3.935 23 H 0.060 0.940 24 O -0.565 6.565 25 C -0.083 4.083 26 C -0.162 4.162 27 C -0.153 4.153 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.254 0.746 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.377 0.623 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 -17.282 9.187 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.142 4.142 4 C -0.125 4.125 5 H 0.106 0.894 6 C 0.308 3.692 7 O -0.415 6.415 8 N -0.367 5.367 9 C 0.036 3.964 10 H 0.120 0.880 11 C 0.002 3.998 12 N -0.326 5.326 13 C -0.360 4.360 14 H 0.096 0.904 15 C -0.201 4.201 16 N -0.566 5.566 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.024 3.976 22 C 0.005 3.995 23 H 0.077 0.923 24 O -0.369 6.369 25 C -0.102 4.102 26 C -0.219 4.219 27 C -0.210 4.210 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.224 0.776 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.069 -16.529 9.577 20.369 hybrid contribution 0.956 0.256 -1.314 1.645 sum -6.113 -16.273 8.263 19.247 Atomic orbital electron populations 1.21764 0.95859 1.01342 1.02018 1.21579 0.95891 0.96748 1.01942 1.21488 0.92316 0.96666 1.03709 1.21474 0.97486 0.93682 0.99876 0.89361 1.20502 0.80799 0.91019 0.76860 1.90688 1.56499 1.46689 1.47631 1.46128 1.21257 1.08629 1.60678 1.21960 0.93158 0.82622 0.98696 0.88028 1.21653 0.92689 0.94716 0.90733 1.44235 1.12381 1.60280 1.15708 1.19044 1.14310 1.14407 0.88240 0.90444 1.24935 0.98877 0.97838 0.98435 1.69901 1.19961 1.33518 1.33175 0.86069 0.77714 0.78697 0.83096 1.21543 1.21556 1.20460 1.22044 0.93881 0.91828 0.89821 1.23619 0.91955 0.99791 0.84157 0.92263 1.86426 1.26589 1.94910 1.29002 1.21064 0.95867 0.99490 0.93787 1.22062 0.95126 1.02825 1.01910 1.21948 1.01633 1.00663 0.96779 0.92933 0.92715 0.92679 0.92081 0.91818 0.90483 0.91558 0.76885 0.94922 0.95334 0.93537 0.90590 0.94310 0.77648 0.90101 0.92522 0.91555 0.92301 0.92309 0.92879 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.02 5.61 -26.74 -0.15 -1.17 16 3 C -0.10 -1.12 4.00 -26.73 -0.11 -1.23 16 4 C -0.10 -1.14 1.98 -91.77 -0.18 -1.32 16 5 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 6 C 0.52 7.91 5.19 -10.99 -0.06 7.85 16 7 O -0.54 -10.25 14.97 5.56 0.08 -10.16 16 8 N -0.72 -10.81 4.16 -52.03 -0.22 -11.03 16 9 C 0.14 2.67 3.09 -66.09 -0.20 2.46 16 10 H 0.10 2.19 7.47 -51.93 -0.39 1.80 16 11 C 0.13 2.82 7.01 -3.07 -0.02 2.80 16 12 N -0.60 -15.27 3.39 -170.08 -0.58 -15.85 16 13 C -0.23 -6.43 10.23 -15.06 -0.15 -6.59 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C 0.00 -0.11 5.46 -17.43 -0.10 -0.20 16 16 N -0.92 -26.45 10.59 55.49 0.59 -25.87 16 17 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.15 3.55 5.13 -2.53 -0.01 3.53 16 22 C 0.07 1.21 4.06 -24.58 -0.10 1.11 16 23 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 24 O -0.56 -9.64 13.47 -35.23 -0.47 -10.11 16 25 C -0.08 -0.80 2.56 -90.62 -0.23 -1.03 16 26 C -0.16 -1.51 8.60 37.16 0.32 -1.19 16 27 C -0.15 -1.69 8.53 37.16 0.32 -1.37 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 6.67 -51.93 -0.35 0.13 16 33 H 0.08 0.91 6.31 -51.93 -0.33 0.59 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.40 4.98 7.65 -40.82 -0.31 4.67 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.08 1.93 6.96 -51.93 -0.36 1.57 16 40 H 0.04 1.02 8.05 -51.93 -0.42 0.60 16 41 H 0.38 4.93 9.11 45.56 0.42 5.34 16 42 H 0.08 0.65 6.47 -51.93 -0.34 0.31 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.75 6.13 -51.93 -0.32 0.43 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.62 6.69 -51.93 -0.35 0.28 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.91 6.38 -51.93 -0.33 0.57 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -32.07 370.32 -8.03 -40.10 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.68 Total: 7.73 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.31 Total: 2.83 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.21 Total: -52.74 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.39 Total: -20.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.07 -8.03 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196518572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.256 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds