Wall clock time and date at job start Tue Mar 31 2020 04:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47544 * 2 1 4 4 C 1.53001 * 109.47042 * 120.00615 * 2 1 3 5 5 C 1.52997 * 109.47328 * 64.99478 * 4 2 1 6 6 H 1.08993 * 109.47194 * 304.99754 * 5 4 2 7 7 C 1.52999 * 109.46991 * 65.00596 * 5 4 2 8 8 C 1.53006 * 109.47127 * 184.99912 * 5 4 2 9 9 C 1.50703 * 109.47148 * 175.00085 * 8 5 4 10 10 O 1.21279 * 119.99456 * 0.02562 * 9 8 5 11 11 N 1.34774 * 119.99766 * 180.02562 * 9 8 5 12 12 C 1.46504 * 119.99669 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.64247 * 34.30385 * 12 11 9 14 14 C 1.54322 * 110.71932 * 271.16038 * 12 11 9 15 15 N 1.47028 * 107.26606 * 219.44429 * 14 12 11 16 16 C 1.36938 * 125.64299 * 178.97763 * 15 14 12 17 17 H 1.07994 * 120.00604 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99795 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99774 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00095 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46719 * 120.00051 * 20 18 16 23 23 H 1.48491 * 109.47325 * 239.99622 * 20 18 16 24 24 C 1.47420 * 108.70586 * 358.93999 * 15 14 12 25 25 C 1.55124 * 104.94324 * 24.00532 * 24 15 14 26 26 H 1.08993 * 110.93743 * 81.21221 * 25 24 15 27 27 O 1.42893 * 111.16273 * 205.13188 * 25 24 15 28 28 H 1.09004 * 109.47022 * 59.99373 * 1 2 3 29 29 H 1.09002 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46699 * 299.99714 * 1 2 3 31 31 H 1.09006 * 109.47083 * 239.99669 * 2 1 3 32 32 H 1.09001 * 109.47547 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47473 * 300.00402 * 3 2 1 34 34 H 1.09001 * 109.46889 * 60.00402 * 3 2 1 35 35 H 1.09002 * 109.46786 * 304.99467 * 4 2 1 36 36 H 1.09001 * 109.46883 * 185.00080 * 4 2 1 37 37 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 38 38 H 1.09002 * 109.46719 * 299.99711 * 7 5 4 39 39 H 1.08993 * 109.47839 * 59.99553 * 7 5 4 40 40 H 1.09000 * 109.47314 * 295.00428 * 8 5 4 41 41 H 1.09007 * 109.46744 * 55.00049 * 8 5 4 42 42 H 0.96996 * 120.00429 * 0.02562 * 11 9 8 43 43 H 1.08998 * 109.88551 * 338.86128 * 14 12 11 44 44 H 1.08997 * 109.88278 * 99.87337 * 14 12 11 45 45 H 0.97003 * 119.99876 * 180.02562 * 19 18 16 46 46 H 1.09005 * 110.36760 * 142.96599 * 24 15 14 47 47 H 1.09002 * 110.36837 * 265.29261 * 24 15 14 48 48 H 0.96699 * 114.00392 * 292.16552 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6351 -2.1956 1.1878 6 1 0.5562 -2.2707 1.0527 7 6 2.3448 -2.8708 0.0126 8 6 2.0353 -2.8890 2.4917 9 6 1.5283 -4.3082 2.4820 10 8 0.9085 -4.7241 1.5261 11 7 1.7638 -5.1151 3.5355 12 6 1.2705 -6.4945 3.5263 13 1 1.2983 -6.9058 2.5173 14 6 -0.1577 -6.5675 4.1065 15 7 -0.2345 -7.7865 4.9249 16 6 -1.3305 -8.2061 5.6305 17 1 -2.2392 -7.6228 5.6141 18 6 -1.2732 -9.3809 6.3678 19 7 -0.1655 -10.0916 6.3882 20 14 -2.7679 -9.9531 7.3310 21 1 -3.8779 -8.9844 7.1438 22 1 -3.1903 -11.2899 6.8412 23 1 -2.4241 -10.0402 8.7729 24 6 1.0634 -8.4825 4.8593 25 6 2.0921 -7.3778 4.5020 26 1 2.3824 -6.8145 5.3888 27 8 3.2377 -7.9308 3.8512 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6054 -0.2619 2.1369 36 1 3.1263 -0.6445 1.2951 37 1 2.0567 -3.9212 -0.0309 38 1 2.0597 -2.3768 -0.9163 39 1 3.4237 -2.7957 0.1477 40 1 3.1214 -2.8918 2.5833 41 1 1.6008 -2.3537 3.3361 42 1 2.2592 -4.7823 4.3002 43 1 -0.3513 -5.6920 4.7263 44 1 -0.8850 -6.6158 3.2961 45 1 -0.1255 -10.9127 6.9032 46 1 1.3039 -8.9284 5.8245 47 1 1.0455 -9.2461 4.0816 48 1 3.7823 -8.4904 4.4216 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197700728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:35 Heat of formation + Delta-G solvation = -86.518347 kcal Electronic energy + Delta-G solvation = -24896.138934 eV Core-core repulsion = 21371.870910 eV Total energy + Delta-G solvation = -3524.268024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89151 -38.19511 -37.29682 -35.08836 -34.04118 -33.57083 -31.73487 -28.94010 -27.80376 -27.36780 -26.79301 -26.55255 -24.37777 -21.79442 -20.70526 -20.18001 -19.82284 -19.50448 -17.28750 -17.00880 -16.59232 -15.73567 -15.59671 -15.32190 -14.79548 -14.42656 -14.04683 -14.02584 -13.74417 -13.60358 -13.14342 -12.89731 -12.85059 -12.46953 -12.40917 -12.19393 -11.94832 -11.80813 -11.54456 -11.52945 -11.39991 -11.26958 -11.08351 -10.96795 -10.86546 -10.71656 -10.50408 -10.44280 -10.17066 -9.93792 -9.73595 -9.61170 -9.21974 -8.73785 -8.70388 -6.93182 -5.73691 -3.16081 2.88406 3.35671 3.38935 3.42669 3.45103 4.38945 4.51705 4.61335 4.63217 4.68423 4.86616 4.97907 5.09845 5.26536 5.36144 5.39265 5.40449 5.43611 5.44167 5.51585 5.61740 5.62807 5.64107 5.66895 5.71990 5.76487 5.86117 5.89697 5.92904 6.04623 6.07245 6.10040 6.19674 6.20995 6.38844 6.44484 6.56822 6.67690 6.95514 7.30692 7.51915 7.68514 7.78559 8.08964 8.24244 8.49774 9.12642 9.73066 10.35613 11.30622 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.002833 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.748285 B = 9880.248750 C =10643.983911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.077 4.077 6 H 0.082 0.918 7 C -0.154 4.154 8 C -0.137 4.137 9 C 0.511 3.489 10 O -0.538 6.538 11 N -0.718 5.718 12 C 0.142 3.858 13 H 0.099 0.901 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.221 4.221 17 H 0.081 0.919 18 C -0.012 4.012 19 N -0.924 5.924 20 Si 0.918 3.082 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.130 3.870 25 C 0.066 3.934 26 H 0.061 0.939 27 O -0.566 6.566 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.397 0.603 43 H 0.029 0.971 44 H 0.033 0.967 45 H 0.253 0.747 46 H 0.113 0.887 47 H 0.025 0.975 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 18.451 -7.543 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.148 4.148 5 C -0.096 4.096 6 H 0.100 0.900 7 C -0.211 4.211 8 C -0.177 4.177 9 C 0.298 3.702 10 O -0.415 6.415 11 N -0.368 5.368 12 C 0.037 3.963 13 H 0.117 0.883 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.349 4.349 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.004 3.996 25 C 0.006 3.994 26 H 0.079 0.921 27 O -0.370 6.370 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.231 0.769 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.130 0.870 47 H 0.043 0.957 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.756 18.319 -8.617 21.679 hybrid contribution -0.290 -0.501 1.409 1.524 sum 7.467 17.817 -7.208 20.619 Atomic orbital electron populations 1.21910 0.95285 1.02231 1.01392 1.21158 0.95994 0.95785 0.98812 1.21845 1.00767 0.96268 1.01556 1.21715 1.00679 0.94628 0.97744 1.20941 1.01716 0.93389 0.93544 0.89997 1.21993 0.99190 1.02637 0.97266 1.21769 1.02583 0.93047 1.00346 1.20656 0.79566 0.87667 0.82329 1.90665 1.40576 1.76244 1.34008 1.46045 1.57436 1.12999 1.20333 1.21980 0.93640 0.79882 1.00818 0.88293 1.21619 0.93155 0.90958 0.93922 1.44302 1.11004 1.22744 1.54757 1.19158 0.90456 1.04724 1.20591 0.90148 1.24811 0.97898 0.97245 1.00763 1.69750 1.25340 1.16704 1.45522 0.85944 0.81486 0.78401 0.79357 1.20442 1.21649 1.21682 1.22579 0.82803 0.90974 1.03253 1.23668 0.86524 0.96232 0.92998 0.92129 1.86413 1.39229 1.69086 1.42292 0.93067 0.92026 0.92836 0.90870 0.92873 0.92924 0.92839 0.92010 0.92022 0.90574 0.92896 0.93590 0.89192 0.89123 0.76923 0.95283 0.94930 0.93646 0.86982 0.95728 0.77631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.95 37.16 0.33 -0.92 16 2 C -0.10 -0.79 2.78 -90.62 -0.25 -1.04 16 3 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 4 C -0.11 -0.90 4.15 -26.73 -0.11 -1.01 16 5 C -0.08 -0.80 1.90 -90.62 -0.17 -0.97 16 6 H 0.08 0.99 6.16 -51.93 -0.32 0.67 16 7 C -0.15 -1.72 8.70 37.16 0.32 -1.40 16 8 C -0.14 -1.42 5.17 -27.88 -0.14 -1.57 16 9 C 0.51 7.61 7.55 -10.99 -0.08 7.53 16 10 O -0.54 -10.03 13.65 5.56 0.08 -9.96 16 11 N -0.72 -10.77 5.12 -52.03 -0.27 -11.03 16 12 C 0.14 2.70 3.00 -66.09 -0.20 2.50 16 13 H 0.10 2.11 7.62 -51.93 -0.40 1.72 16 14 C 0.13 2.86 7.00 -3.06 -0.02 2.84 16 15 N -0.60 -15.42 3.40 -169.94 -0.58 -16.00 16 16 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 17 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 20 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.13 3.10 5.63 -2.42 -0.01 3.08 16 25 C 0.07 1.24 4.06 -24.47 -0.10 1.14 16 26 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 27 O -0.57 -9.72 13.48 -35.23 -0.47 -10.19 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.58 6.46 -51.93 -0.34 0.24 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 38 H 0.05 0.54 6.46 -51.93 -0.34 0.20 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.40 4.81 8.54 -40.82 -0.35 4.46 16 43 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 47 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.38 4.90 9.12 45.56 0.42 5.32 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -32.08 372.86 -8.15 -40.23 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.71 Total: 7.54 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.35 Total: 2.79 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.28 Total: -52.88 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.40 Total: -20.15 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.08 -8.15 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197700728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.291 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds