Wall clock time and date at job start Tue Mar 31 2020 04:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 C 1.53000 * 109.46741 * 119.99676 * 2 1 3 5 5 C 1.53001 * 109.46690 * 174.09811 * 4 2 1 6 6 H 1.08998 * 109.47694 * 54.97760 * 5 4 2 7 7 C 1.52995 * 109.47050 * 294.97333 * 5 4 2 8 8 C 1.53004 * 109.46946 * 174.97789 * 5 4 2 9 9 C 1.50702 * 109.47198 * 184.99830 * 8 5 4 10 10 O 1.21279 * 119.99887 * 359.97438 * 9 8 5 11 11 N 1.34781 * 119.99819 * 180.02562 * 9 8 5 12 12 C 1.46494 * 119.99716 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.64163 * 34.30168 * 12 11 9 14 14 C 1.54321 * 110.71976 * 271.15600 * 12 11 9 15 15 N 1.47024 * 107.27252 * 219.44146 * 14 12 11 16 16 C 1.36938 * 125.65136 * 178.97302 * 15 14 12 17 17 H 1.07997 * 119.99599 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00156 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99799 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47064 * 90.00538 * 20 18 16 22 22 H 1.48501 * 109.47081 * 210.00331 * 20 18 16 23 23 H 1.48507 * 109.46961 * 330.00058 * 20 18 16 24 24 C 1.47432 * 108.70249 * 358.94214 * 15 14 12 25 25 C 1.55126 * 104.94110 * 24.00350 * 24 15 14 26 26 H 1.08998 * 110.94034 * 81.21043 * 25 24 15 27 27 O 1.42903 * 111.16186 * 205.13283 * 25 24 15 28 28 H 1.09001 * 109.47092 * 55.21394 * 1 2 3 29 29 H 1.08997 * 109.47165 * 175.21219 * 1 2 3 30 30 H 1.08995 * 109.47280 * 295.21521 * 1 2 3 31 31 H 1.08996 * 109.47327 * 239.99640 * 2 1 3 32 32 H 1.09001 * 109.46922 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46838 * 299.99900 * 3 2 1 34 34 H 1.08996 * 109.47272 * 59.99606 * 3 2 1 35 35 H 1.09001 * 109.47438 * 54.09717 * 4 2 1 36 36 H 1.09003 * 109.47279 * 294.09162 * 4 2 1 37 37 H 1.09003 * 109.47202 * 185.80304 * 7 5 4 38 38 H 1.08999 * 109.47580 * 305.80066 * 7 5 4 39 39 H 1.08995 * 109.47104 * 65.80688 * 7 5 4 40 40 H 1.08994 * 109.47289 * 305.00091 * 8 5 4 41 41 H 1.09004 * 109.46885 * 64.99779 * 8 5 4 42 42 H 0.96998 * 119.99914 * 359.97438 * 11 9 8 43 43 H 1.08997 * 109.88497 * 338.86035 * 14 12 11 44 44 H 1.09001 * 109.88263 * 99.87227 * 14 12 11 45 45 H 0.97003 * 119.99949 * 179.97438 * 19 18 16 46 46 H 1.08998 * 110.36551 * 142.96191 * 24 15 14 47 47 H 1.08997 * 110.36826 * 265.29034 * 24 15 14 48 48 H 0.96696 * 113.99741 * 292.16675 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5627 -0.8509 1.1774 6 1 4.0050 0.1348 1.0332 7 6 3.9425 -1.7568 0.0044 8 6 4.0849 -1.4586 2.4808 9 6 5.5917 -1.4732 2.4600 10 8 6.1891 -1.0407 1.4972 11 7 6.2754 -1.9679 3.5109 12 6 7.7402 -1.9816 3.4909 13 1 8.1254 -1.1106 2.9608 14 6 8.2653 -3.2852 2.8534 15 7 9.4407 -3.7078 3.6289 16 6 10.1869 -4.8326 3.3982 17 1 9.9267 -5.4961 2.5868 18 6 11.2775 -5.1200 4.2073 19 7 11.5942 -4.3116 5.1966 20 14 12.2959 -6.6540 3.8921 21 1 13.3960 -6.3324 2.9480 22 1 12.8690 -7.1395 5.1731 23 1 11.4320 -7.7095 3.3047 24 6 9.6833 -2.7196 4.6958 25 6 8.3084 -2.0419 4.9335 26 1 7.6775 -2.6555 5.5765 27 8 8.4671 -0.7296 5.4766 28 1 -0.3633 0.5863 -0.8440 29 1 -0.3633 -1.0240 -0.0858 30 1 -0.3633 0.4378 0.9297 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.5928 -1.7138 1.3038 36 1 1.7655 -0.1499 2.1361 37 1 5.0182 -1.9327 0.0145 38 1 3.4180 -2.7080 0.0951 39 1 3.6620 -1.2751 -0.9323 40 1 3.7390 -0.8613 3.3244 41 1 3.7130 -2.4783 2.5809 42 1 5.7976 -2.3142 4.2808 43 1 7.4956 -4.0557 2.8973 44 1 8.5484 -3.1030 1.8167 45 1 12.3562 -4.5126 5.7622 46 1 10.0238 -3.2175 5.6037 47 1 10.4157 -1.9812 4.3696 48 1 8.8196 -0.7167 6.3770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197700729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:39 Heat of formation + Delta-G solvation = -86.624428 kcal Electronic energy + Delta-G solvation = -24899.351971 eV Core-core repulsion = 21375.079347 eV Total energy + Delta-G solvation = -3524.272624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89453 -38.19097 -37.29321 -35.08709 -34.04217 -33.57450 -31.73506 -28.93678 -27.80463 -27.37724 -26.77348 -26.55681 -24.37822 -21.79083 -20.69986 -20.17121 -19.82525 -19.51226 -17.28730 -17.01826 -16.59098 -15.83987 -15.52149 -15.15615 -14.89781 -14.43306 -14.18344 -13.87323 -13.77858 -13.57804 -13.15035 -12.89688 -12.83103 -12.50389 -12.46262 -12.14974 -11.92795 -11.82308 -11.54226 -11.51243 -11.38523 -11.27201 -11.10601 -10.95970 -10.84720 -10.71721 -10.52243 -10.44503 -10.18953 -9.93446 -9.73555 -9.62061 -9.20101 -8.73317 -8.71279 -6.93132 -5.73402 -3.15878 2.88287 3.36359 3.38943 3.42449 3.44342 4.39105 4.51721 4.61361 4.63233 4.68334 4.86359 4.98269 5.09612 5.26517 5.35163 5.39282 5.41106 5.42327 5.44715 5.51838 5.61510 5.62717 5.63462 5.67775 5.72321 5.75935 5.85902 5.89912 5.93037 6.05631 6.07241 6.10233 6.19578 6.20868 6.38445 6.45774 6.57260 6.67613 6.95595 7.30773 7.51694 7.68483 7.78547 8.08990 8.24444 8.49652 9.12765 9.73259 10.35830 11.30826 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.002780 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.807827 B =10070.472697 C =10708.170837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.077 4.077 6 H 0.081 0.919 7 C -0.153 4.153 8 C -0.137 4.137 9 C 0.511 3.489 10 O -0.538 6.538 11 N -0.718 5.718 12 C 0.142 3.858 13 H 0.099 0.901 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.011 4.011 19 N -0.925 5.925 20 Si 0.918 3.082 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.130 3.870 25 C 0.066 3.934 26 H 0.061 0.939 27 O -0.566 6.566 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.397 0.603 43 H 0.029 0.971 44 H 0.033 0.967 45 H 0.253 0.747 46 H 0.113 0.887 47 H 0.025 0.975 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.162 7.582 -3.070 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.208 4.208 4 C -0.147 4.147 5 C -0.095 4.095 6 H 0.099 0.901 7 C -0.211 4.211 8 C -0.178 4.178 9 C 0.298 3.702 10 O -0.415 6.415 11 N -0.368 5.368 12 C 0.037 3.963 13 H 0.117 0.883 14 C 0.004 3.996 15 N -0.328 5.328 16 C -0.350 4.350 17 H 0.098 0.902 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.004 3.996 25 C 0.006 3.994 26 H 0.079 0.921 27 O -0.370 6.370 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.231 0.769 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.130 0.870 47 H 0.043 0.957 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -19.785 7.954 -4.275 21.749 hybrid contribution 0.565 -1.133 0.809 1.503 sum -19.221 6.821 -3.466 20.687 Atomic orbital electron populations 1.21846 0.95563 1.01477 1.01554 1.21153 0.95246 0.96497 0.98860 1.21905 1.01644 0.95862 1.01354 1.21724 0.94973 1.00383 0.97666 1.20937 0.94522 1.00487 0.93593 0.90096 1.21985 1.03450 0.98378 0.97242 1.21762 0.92264 1.03435 1.00297 1.20660 0.89988 0.77097 0.82486 1.90669 1.70957 1.46623 1.33230 1.46047 1.07253 1.63357 1.20156 1.21980 0.78400 0.99780 0.96169 0.88298 1.21616 0.90408 0.92440 0.95168 1.44295 1.30525 1.24946 1.33033 1.19107 1.06287 0.97764 1.11844 0.90208 1.24806 0.98582 0.99178 0.98108 1.69738 1.29556 1.37503 1.20536 0.86018 0.80118 0.82004 0.77039 1.21504 1.21596 1.20624 1.22580 0.89983 0.90949 0.96091 1.23673 0.99799 0.83354 0.92604 0.92123 1.86415 1.87835 1.28148 1.34629 0.92912 0.92866 0.92853 0.90847 0.92082 0.93060 0.92884 0.91972 0.92059 0.90575 0.93528 0.92930 0.89207 0.89099 0.76922 0.95283 0.94946 0.93593 0.86977 0.95735 0.77631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.16 0.34 -0.66 16 2 C -0.10 -0.79 2.79 -90.62 -0.25 -1.04 16 3 C -0.15 -1.22 8.97 37.16 0.33 -0.89 16 4 C -0.11 -0.90 4.14 -26.73 -0.11 -1.01 16 5 C -0.08 -0.80 1.91 -90.62 -0.17 -0.97 16 6 H 0.08 0.97 6.19 -51.93 -0.32 0.64 16 7 C -0.15 -1.76 8.60 37.16 0.32 -1.44 16 8 C -0.14 -1.42 5.17 -27.88 -0.14 -1.57 16 9 C 0.51 7.61 7.50 -10.98 -0.08 7.53 16 10 O -0.54 -10.03 13.68 5.56 0.08 -9.96 16 11 N -0.72 -10.77 5.12 -52.03 -0.27 -11.03 16 12 C 0.14 2.70 3.00 -66.10 -0.20 2.50 16 13 H 0.10 2.11 7.62 -51.93 -0.40 1.72 16 14 C 0.13 2.87 7.00 -3.06 -0.02 2.84 16 15 N -0.60 -15.42 3.40 -169.93 -0.58 -16.00 16 16 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 20 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.13 3.10 5.64 -2.41 -0.01 3.09 16 25 C 0.07 1.24 4.06 -24.46 -0.10 1.14 16 26 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 27 O -0.57 -9.73 13.48 -35.23 -0.47 -10.20 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 32 H 0.06 0.56 6.49 -51.93 -0.34 0.22 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.11 5.87 -51.93 -0.30 0.80 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.56 6.73 -51.93 -0.35 0.21 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.40 4.81 8.54 -40.82 -0.35 4.46 16 43 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 47 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.38 4.91 9.12 45.56 0.42 5.32 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -32.06 373.11 -8.17 -40.23 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.73 Total: 7.55 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.35 Total: 2.79 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.28 Total: -52.88 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.40 Total: -20.16 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.06 -8.17 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197700729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.393 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds