Wall clock time and date at job start Tue Mar 31 2020 04:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 C 1.53000 * 109.46741 * 119.99676 * 2 1 3 5 5 C 1.53001 * 109.46690 * 174.09811 * 4 2 1 6 6 H 1.08998 * 109.47694 * 54.97760 * 5 4 2 7 7 C 1.52995 * 109.47050 * 294.97333 * 5 4 2 8 8 C 1.53004 * 109.46946 * 174.97789 * 5 4 2 9 9 C 1.50702 * 109.47198 * 184.99830 * 8 5 4 10 10 O 1.21279 * 119.99887 * 359.97438 * 9 8 5 11 11 N 1.34781 * 119.99819 * 180.02562 * 9 8 5 12 12 C 1.46494 * 119.99716 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.64163 * 34.30168 * 12 11 9 14 14 C 1.54321 * 110.71976 * 271.15600 * 12 11 9 15 15 N 1.47024 * 107.27252 * 219.44146 * 14 12 11 16 16 C 1.36938 * 125.65136 * 178.97302 * 15 14 12 17 17 H 1.07997 * 119.99599 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00156 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99799 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47064 * 90.00538 * 20 18 16 22 22 H 1.48501 * 109.47081 * 210.00331 * 20 18 16 23 23 H 1.48507 * 109.46961 * 330.00058 * 20 18 16 24 24 C 1.47432 * 108.70249 * 358.94214 * 15 14 12 25 25 C 1.55126 * 104.94110 * 24.00350 * 24 15 14 26 26 H 1.08998 * 110.94034 * 81.21043 * 25 24 15 27 27 O 1.42903 * 111.16186 * 205.13283 * 25 24 15 28 28 H 1.09001 * 109.47092 * 55.21394 * 1 2 3 29 29 H 1.08997 * 109.47165 * 175.21219 * 1 2 3 30 30 H 1.08995 * 109.47280 * 295.21521 * 1 2 3 31 31 H 1.08996 * 109.47327 * 239.99640 * 2 1 3 32 32 H 1.09001 * 109.46922 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46838 * 299.99900 * 3 2 1 34 34 H 1.08996 * 109.47272 * 59.99606 * 3 2 1 35 35 H 1.09001 * 109.47438 * 54.09717 * 4 2 1 36 36 H 1.09003 * 109.47279 * 294.09162 * 4 2 1 37 37 H 1.09003 * 109.47202 * 185.80304 * 7 5 4 38 38 H 1.08999 * 109.47580 * 305.80066 * 7 5 4 39 39 H 1.08995 * 109.47104 * 65.80688 * 7 5 4 40 40 H 1.08994 * 109.47289 * 305.00091 * 8 5 4 41 41 H 1.09004 * 109.46885 * 64.99779 * 8 5 4 42 42 H 0.96998 * 119.99914 * 359.97438 * 11 9 8 43 43 H 1.08997 * 109.88497 * 338.86035 * 14 12 11 44 44 H 1.09001 * 109.88263 * 99.87227 * 14 12 11 45 45 H 0.97003 * 119.99949 * 179.97438 * 19 18 16 46 46 H 1.08998 * 110.36551 * 142.96191 * 24 15 14 47 47 H 1.08997 * 110.36826 * 265.29034 * 24 15 14 48 48 H 0.96696 * 113.99741 * 292.16675 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5627 -0.8509 1.1774 6 1 4.0050 0.1348 1.0332 7 6 3.9425 -1.7568 0.0044 8 6 4.0849 -1.4586 2.4808 9 6 5.5917 -1.4732 2.4600 10 8 6.1891 -1.0407 1.4972 11 7 6.2754 -1.9679 3.5109 12 6 7.7402 -1.9816 3.4909 13 1 8.1254 -1.1106 2.9608 14 6 8.2653 -3.2852 2.8534 15 7 9.4407 -3.7078 3.6289 16 6 10.1869 -4.8326 3.3982 17 1 9.9267 -5.4961 2.5868 18 6 11.2775 -5.1200 4.2073 19 7 11.5942 -4.3116 5.1966 20 14 12.2959 -6.6540 3.8921 21 1 13.3960 -6.3324 2.9480 22 1 12.8690 -7.1395 5.1731 23 1 11.4320 -7.7095 3.3047 24 6 9.6833 -2.7196 4.6958 25 6 8.3084 -2.0419 4.9335 26 1 7.6775 -2.6555 5.5765 27 8 8.4671 -0.7296 5.4766 28 1 -0.3633 0.5863 -0.8440 29 1 -0.3633 -1.0240 -0.0858 30 1 -0.3633 0.4378 0.9297 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.5928 -1.7138 1.3038 36 1 1.7655 -0.1499 2.1361 37 1 5.0182 -1.9327 0.0145 38 1 3.4180 -2.7080 0.0951 39 1 3.6620 -1.2751 -0.9323 40 1 3.7390 -0.8613 3.3244 41 1 3.7130 -2.4783 2.5809 42 1 5.7976 -2.3142 4.2808 43 1 7.4956 -4.0557 2.8973 44 1 8.5484 -3.1030 1.8167 45 1 12.3562 -4.5126 5.7622 46 1 10.0238 -3.2175 5.6037 47 1 10.4157 -1.9812 4.3696 48 1 8.8196 -0.7167 6.3770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197700729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:38 Heat of formation + Delta-G solvation = -109.503863 kcal Electronic energy + Delta-G solvation = -24900.344098 eV Core-core repulsion = 21375.079347 eV Total energy + Delta-G solvation = -3525.264751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15634 -39.59758 -38.23557 -36.70341 -35.54959 -34.40317 -33.61353 -30.51609 -29.27740 -28.15201 -27.94507 -27.44812 -26.23062 -22.90633 -22.37727 -21.62957 -21.02014 -20.24647 -19.10233 -18.48895 -17.88826 -17.32479 -16.68737 -16.42610 -16.11747 -15.71264 -15.57916 -15.05237 -14.88026 -14.75814 -14.66370 -14.12690 -14.03237 -13.81869 -13.58856 -13.25003 -13.14373 -13.12781 -12.98968 -12.76011 -12.72804 -12.54764 -12.29355 -12.14201 -12.05558 -11.94460 -11.80724 -11.49885 -11.42869 -11.22685 -11.15681 -11.09504 -10.79546 -10.56906 -10.10530 -8.99333 -7.83674 -5.30322 1.46223 1.48365 1.57002 1.71206 2.15632 2.46270 3.07454 3.27747 3.62259 3.70566 3.80333 3.89374 3.99811 4.04685 4.15931 4.19667 4.25203 4.37928 4.42293 4.56398 4.60258 4.70351 4.75297 4.76748 4.82652 4.85015 4.90607 4.94951 5.01962 5.08736 5.10760 5.19479 5.22589 5.35661 5.37595 5.38597 5.42162 5.49217 5.54228 5.63427 5.66154 5.67656 6.19429 6.61624 6.85739 7.03094 7.34022 7.67106 8.29489 9.18060 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.002780 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.807827 B =10070.472697 C =10708.170837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.150 4.150 4 C -0.102 4.102 5 C -0.075 4.075 6 H 0.061 0.939 7 C -0.151 4.151 8 C -0.127 4.127 9 C 0.506 3.494 10 O -0.581 6.581 11 N -0.707 5.707 12 C 0.156 3.844 13 H 0.071 0.929 14 C 0.133 3.867 15 N -0.619 5.619 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.062 4.062 19 N -0.947 5.947 20 Si 0.984 3.016 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.133 3.867 25 C 0.092 3.908 26 H 0.089 0.911 27 O -0.568 6.568 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.416 0.584 43 H 0.041 0.959 44 H 0.011 0.989 45 H 0.251 0.749 46 H 0.092 0.908 47 H -0.012 1.012 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.773 7.042 -2.142 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.207 4.207 4 C -0.139 4.139 5 C -0.094 4.094 6 H 0.079 0.921 7 C -0.208 4.208 8 C -0.167 4.167 9 C 0.295 3.705 10 O -0.460 6.460 11 N -0.359 5.359 12 C 0.049 3.951 13 H 0.089 0.911 14 C 0.006 3.994 15 N -0.347 5.347 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.812 3.188 21 H -0.217 1.217 22 H -0.214 1.214 23 H -0.193 1.193 24 C 0.007 3.993 25 C 0.031 3.969 26 H 0.107 0.893 27 O -0.376 6.376 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.253 0.747 43 H 0.059 0.941 44 H 0.029 0.971 45 H 0.061 0.939 46 H 0.109 0.891 47 H 0.006 0.994 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -22.441 7.422 -3.319 23.869 hybrid contribution 1.409 -0.907 0.464 1.738 sum -21.033 6.515 -2.856 22.203 Atomic orbital electron populations 1.21813 0.94417 1.01925 1.01975 1.21160 0.96158 0.96054 0.98547 1.21898 1.00584 0.96399 1.01848 1.21664 0.92794 1.01290 0.98175 1.20910 0.96216 0.99079 0.93163 0.92106 1.21933 1.01145 0.99477 0.98230 1.21821 0.88099 1.05529 1.01231 1.21583 0.91921 0.75675 0.81360 1.90668 1.72229 1.48294 1.34838 1.45876 1.05280 1.63533 1.21224 1.21469 0.81007 0.96925 0.95672 0.91070 1.21666 0.89608 0.94208 0.93919 1.44557 1.31308 1.24773 1.34059 1.19444 1.07127 0.98651 1.12083 0.90167 1.25651 0.99651 1.02154 0.98029 1.69960 1.29700 1.38866 1.21075 0.85001 0.78337 0.78745 0.76744 1.21659 1.21371 1.19311 1.22414 0.92422 0.89952 0.94520 1.23283 0.96701 0.83934 0.92994 0.89336 1.86388 1.87848 1.26935 1.36381 0.92745 0.92369 0.92266 0.91705 0.93701 0.92722 0.92276 0.90774 0.90810 0.94123 0.92146 0.92709 0.86277 0.86568 0.74715 0.94088 0.97144 0.93939 0.89071 0.99378 0.75276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.10 -1.41 2.79 -10.79 -0.03 -1.44 16 3 C -0.15 -2.27 8.97 71.98 0.65 -1.62 16 4 C -0.10 -1.36 4.14 30.59 0.13 -1.24 16 5 C -0.07 -1.43 1.91 -10.79 -0.02 -1.45 16 6 H 0.06 1.43 6.19 -2.39 -0.01 1.41 16 7 C -0.15 -3.37 8.60 71.98 0.62 -2.75 16 8 C -0.13 -2.26 5.17 29.85 0.15 -2.10 16 9 C 0.51 14.46 7.50 87.66 0.66 15.11 16 10 O -0.58 -22.10 13.68 -3.02 -0.04 -22.14 16 11 N -0.71 -19.97 5.12 -436.91 -2.24 -22.21 16 12 C 0.16 5.91 3.00 46.18 0.14 6.05 16 13 H 0.07 3.13 7.62 -2.38 -0.02 3.11 16 14 C 0.13 5.91 7.00 86.73 0.61 6.51 16 15 N -0.62 -32.51 3.40 -691.55 -2.35 -34.86 16 16 C -0.24 -13.82 10.27 84.03 0.86 -12.95 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 18 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 19 N -0.95 -55.10 10.09 21.65 0.22 -54.88 16 20 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C 0.13 6.50 5.64 86.93 0.49 6.99 16 25 C 0.09 3.35 4.06 32.06 0.13 3.48 16 26 H 0.09 2.81 8.00 -2.39 -0.02 2.80 16 27 O -0.57 -18.70 13.48 -148.98 -2.01 -20.71 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 32 H 0.04 0.82 6.49 -2.39 -0.02 0.80 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.04 1.21 5.87 -2.39 -0.01 1.19 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.16 6.73 -2.39 -0.02 1.14 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.42 8.69 8.54 -92.71 -0.79 7.90 16 43 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.09 4.86 5.87 -2.39 -0.01 4.84 16 47 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 48 H 0.40 9.58 9.12 -74.06 -0.68 8.90 16 Total: -1.00 -72.07 373.11 0.60 -71.47 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.52 Total: 25.48 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.51 Total: 10.62 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.37 Total: -111.94 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -2.05 Total: -42.84 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.07 0.60 -71.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197700729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.038 kcal (2) G-P(sol) polarization free energy of solvation -72.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds