Wall clock time and date at job start Tue Mar 31 2020 03:16:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.34775 * 120.00508 * 2 1
4 4 O 1.21597 * 119.99305 * 0.02562 * 3 2 1
5 5 N 1.34773 * 120.00524 * 179.97438 * 3 2 1
6 6 C 1.46506 * 120.00050 * 179.97438 * 5 3 2
7 7 C 1.52996 * 109.47102 * 180.02562 * 6 5 3
8 8 C 1.50700 * 109.46981 * 180.02562 * 7 6 5
9 9 O 1.21283 * 120.00281 * 359.97438 * 8 7 6
10 10 N 1.34773 * 119.99929 * 179.97438 * 8 7 6
11 11 C 1.46931 * 120.63029 * 359.97438 * 10 8 7
12 12 C 1.53200 * 108.77279 * 126.41292 * 11 10 8
13 13 C 1.53039 * 109.31160 * 54.63574 * 12 11 10
14 14 C 1.53046 * 109.52798 * 298.64112 * 13 12 11
15 15 H 1.08994 * 109.49581 * 301.40708 * 14 13 12
16 16 N 1.46501 * 109.49630 * 181.31171 * 14 13 12
17 17 C 1.36935 * 119.99704 * 155.00148 * 16 14 13
18 18 H 1.07997 * 120.00376 * 359.97438 * 17 16 14
19 19 C 1.38819 * 119.99849 * 179.97438 * 17 16 14
20 20 N 1.31607 * 120.00128 * 179.97438 * 19 17 16
21 21 Si 1.86807 * 119.99778 * 359.97438 * 19 17 16
22 22 H 1.48494 * 109.46785 * 90.00209 * 21 19 17
23 23 H 1.48498 * 109.46793 * 210.00150 * 21 19 17
24 24 H 1.48500 * 109.47066 * 330.00298 * 21 19 17
25 25 C 1.46928 * 120.63179 * 180.02562 * 10 8 7
26 26 H 1.09001 * 109.46847 * 299.99538 * 1 2 3
27 27 H 1.08992 * 109.47247 * 60.00205 * 1 2 3
28 28 H 1.09001 * 109.46952 * 180.02562 * 1 2 3
29 29 H 0.97006 * 120.00071 * 179.97438 * 2 1 3
30 30 H 0.96995 * 120.00102 * 0.02562 * 5 3 2
31 31 H 1.09006 * 109.46832 * 59.99871 * 6 5 3
32 32 H 1.08999 * 109.46809 * 300.00603 * 6 5 3
33 33 H 1.09000 * 109.47400 * 59.99756 * 7 6 5
34 34 H 1.09001 * 109.46877 * 299.99721 * 7 6 5
35 35 H 1.08998 * 109.58425 * 6.63242 * 11 10 8
36 36 H 1.08995 * 109.70793 * 246.26860 * 11 10 8
37 37 H 1.08997 * 109.49280 * 294.68615 * 12 11 10
38 38 H 1.08992 * 109.49396 * 174.58854 * 12 11 10
39 39 H 1.09002 * 109.46050 * 58.65698 * 13 12 11
40 40 H 1.09004 * 109.46034 * 178.62914 * 13 12 11
41 41 H 0.97005 * 119.99942 * 334.99860 * 16 14 13
42 42 H 0.97001 * 120.00347 * 180.02562 * 20 19 17
43 43 H 1.08999 * 109.58766 * 353.37877 * 25 10 8
44 44 H 1.09002 * 109.58364 * 113.65972 * 25 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 1.5309 2.2202 0.0005
5 7 3.4867 1.1671 0.0005
6 6 4.2192 2.4359 0.0000
7 6 5.7234 2.1563 0.0001
8 6 6.4769 3.4614 0.0001
9 8 5.8705 4.5118 -0.0004
10 7 7.8246 3.4614 0.0008
11 6 8.5732 2.1971 0.0020
12 6 9.5659 2.2108 -1.1649
13 6 10.4433 3.4609 -1.0683
14 6 9.5655 4.7109 -1.1658
15 1 9.0187 4.6986 -2.1086
16 7 10.4093 5.9069 -1.1048
17 6 9.9763 7.0795 -1.6638
18 1 9.0129 7.1226 -2.1500
19 6 10.7756 8.2130 -1.6055
20 7 10.3596 9.3399 -2.1431
21 14 12.4416 8.1387 -0.7637
22 1 13.4805 7.7602 -1.7550
23 1 12.7661 9.4694 -0.1901
24 1 12.4025 7.1274 0.3230
25 6 8.5732 4.7257 0.0014
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.9500 -0.8401 0.0004
30 1 3.9717 0.3271 0.0005
31 1 3.9555 3.0081 0.8895
32 1 3.9561 3.0069 -0.8905
33 1 5.9868 1.5843 -0.8896
34 1 5.9867 1.5852 0.8904
35 1 7.8817 1.3630 -0.1164
36 1 9.1154 2.0919 0.9416
37 1 9.0189 2.2222 -2.1076
38 1 10.1938 1.3211 -1.1187
39 1 10.9711 3.4614 -0.1146
40 1 11.1667 3.4607 -1.8837
41 1 11.2748 5.8681 -0.6683
42 1 10.9183 10.1319 -2.1027
43 1 7.8818 5.5599 -0.1172
44 1 9.1136 4.8299 0.9423
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001207982782.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:45
Heat of formation + Delta-G solvation = -50.771067 kcal
Electronic energy + Delta-G solvation = -24148.655115 eV
Core-core repulsion = 20522.396866 eV
Total energy + Delta-G solvation = -3626.258249 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.179 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.32892 -39.87115 -37.54759 -35.51848 -34.72823 -34.64551 -32.40639 -31.48179
-31.04763 -28.79338 -27.00606 -25.34739 -24.00729 -23.07311 -21.77680 -21.23663
-20.35411 -19.22295 -18.43632 -17.57807 -17.30032 -16.28190 -16.23352 -15.63076
-15.47312 -14.77195 -14.58705 -14.51021 -14.32623 -14.26131 -13.80941 -13.50440
-13.19926 -13.09326 -12.63190 -12.61703 -12.55824 -12.43543 -12.12490 -11.65515
-11.58143 -11.22681 -10.95107 -10.76833 -10.68428 -10.48739 -10.32545 -9.91937
-9.67902 -9.57935 -9.57625 -9.12535 -9.09690 -8.42901 -7.30715 -5.77249
-3.15021 2.37946 2.73747 2.99622 3.15699 3.35787 3.37796 3.44474
3.96944 4.50031 4.57103 4.59266 4.74899 4.83120 4.84780 4.96378
5.11072 5.13966 5.21509 5.33590 5.43333 5.46029 5.47217 5.66238
5.72317 5.77529 5.85003 5.86412 5.98611 6.03217 6.11053 6.19168
6.20748 6.35671 6.58559 6.61688 6.71041 6.87995 7.56903 7.71582
7.98324 8.31189 8.36750 8.41454 9.18193 9.89678 10.07871 11.40697
Molecular weight = 298.18amu
Principal moments of inertia in cm(-1)
A = 0.027151 B = 0.002698 C = 0.002511
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1031.031941 B =10374.940915 C =11147.712863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.107 3.893
2 N -0.753 5.753
3 C 0.700 3.300
4 O -0.584 6.584
5 N -0.747 5.747
6 C 0.152 3.848
7 C -0.151 4.151
8 C 0.513 3.487
9 O -0.532 6.532
10 N -0.608 5.608
11 C 0.107 3.893
12 C -0.130 4.130
13 C -0.130 4.130
14 C 0.173 3.827
15 H 0.060 0.940
16 N -0.742 5.742
17 C -0.249 4.249
18 H 0.092 0.908
19 C 0.007 3.993
20 N -0.930 5.930
21 Si 0.885 3.115
22 H -0.284 1.284
23 H -0.291 1.291
24 H -0.277 1.277
25 C 0.092 3.908
26 H 0.058 0.942
27 H 0.058 0.942
28 H 0.074 0.926
29 H 0.396 0.604
30 H 0.394 0.606
31 H 0.076 0.924
32 H 0.077 0.923
33 H 0.098 0.902
34 H 0.097 0.903
35 H 0.079 0.921
36 H 0.068 0.932
37 H 0.068 0.932
38 H 0.072 0.928
39 H 0.060 0.940
40 H 0.068 0.932
41 H 0.362 0.638
42 H 0.260 0.740
43 H 0.096 0.904
44 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.711 -27.664 5.689 29.865
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 N -0.409 5.409
3 C 0.400 3.600
4 O -0.461 6.461
5 N -0.403 5.403
6 C 0.027 3.973
7 C -0.191 4.191
8 C 0.300 3.700
9 O -0.408 6.408
10 N -0.342 5.342
11 C -0.017 4.017
12 C -0.169 4.169
13 C -0.169 4.169
14 C 0.062 3.938
15 H 0.078 0.922
16 N -0.384 5.384
17 C -0.378 4.378
18 H 0.110 0.890
19 C -0.189 4.189
20 N -0.577 5.577
21 Si 0.715 3.285
22 H -0.211 1.211
23 H -0.217 1.217
24 H -0.204 1.204
25 C -0.032 4.032
26 H 0.076 0.924
27 H 0.077 0.923
28 H 0.093 0.907
29 H 0.229 0.771
30 H 0.227 0.773
31 H 0.095 0.905
32 H 0.096 0.904
33 H 0.117 0.883
34 H 0.115 0.885
35 H 0.098 0.902
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.091 0.909
39 H 0.079 0.921
40 H 0.087 0.913
41 H 0.195 0.805
42 H 0.070 0.930
43 H 0.114 0.886
44 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -10.744 -25.853 5.555 28.543
hybrid contribution 1.824 -0.815 0.638 2.097
sum -8.921 -26.668 6.193 28.795
Atomic orbital electron populations
1.21388 0.78131 1.01857 1.02419 1.44916 1.07792 1.07057 1.81165
1.15951 0.81742 0.84307 0.78031 1.90981 1.67753 1.30274 1.57058
1.45095 1.04755 1.09786 1.80645 1.20923 0.88041 0.83986 1.04318
1.21823 0.95296 0.97415 1.04608 1.20232 0.82285 0.90661 0.76851
1.90778 1.67396 1.33408 1.49250 1.48244 1.05140 1.08004 1.72797
1.21736 0.94933 0.85844 0.99149 1.21875 0.97827 0.98565 0.98611
1.21870 0.98434 0.94393 1.02161 1.20467 0.91005 0.86016 0.96286
0.92217 1.42730 1.18937 1.07844 1.68936 1.19101 1.03402 0.86059
1.29282 0.89033 1.24695 0.98230 0.95538 1.00468 1.69701 1.37836
1.00619 1.49541 0.86550 0.85513 0.76865 0.79557 1.21077 1.21700
1.20352 1.22711 0.95457 0.84933 1.00121 0.92363 0.92320 0.90733
0.77101 0.77271 0.90523 0.90417 0.88346 0.88511 0.90240 0.91419
0.91354 0.90934 0.92150 0.91302 0.80484 0.92980 0.88605 0.92209
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 0.66 10.70 59.84 0.64 1.30 16
2 N -0.75 -5.24 5.72 -72.08 -0.41 -5.65 16
3 C 0.70 7.86 8.57 -86.92 -0.74 7.11 16
4 O -0.58 -9.69 16.34 5.28 0.09 -9.60 16
5 N -0.75 -6.35 5.56 -65.22 -0.36 -6.71 16
6 C 0.15 1.71 4.96 -4.04 -0.02 1.69 16
7 C -0.15 -1.34 4.16 -27.88 -0.12 -1.45 16
8 C 0.51 7.42 7.70 -10.99 -0.08 7.34 16
9 O -0.53 -10.44 15.40 5.56 0.09 -10.36 16
10 N -0.61 -8.41 2.97 -172.75 -0.51 -8.92 16
11 C 0.11 0.99 6.34 -3.70 -0.02 0.97 16
12 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16
13 C -0.13 -1.80 5.36 -26.69 -0.14 -1.95 16
14 C 0.17 3.22 2.92 -67.80 -0.20 3.02 16
15 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16
16 N -0.74 -17.20 4.93 -53.30 -0.26 -17.46 16
17 C -0.25 -7.03 10.41 -15.06 -0.16 -7.19 16
18 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16
19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16
20 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16
21 Si 0.88 21.96 27.74 -169.99 -4.71 17.24 16
22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
24 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16
25 C 0.09 1.65 6.02 -3.70 -0.02 1.63 16
26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
28 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16
29 H 0.40 1.31 8.84 -40.82 -0.36 0.95 16
30 H 0.39 1.75 8.49 -40.82 -0.35 1.41 16
31 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16
32 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16
33 H 0.10 0.64 7.69 -51.93 -0.40 0.24 16
34 H 0.10 0.60 7.94 -51.93 -0.41 0.18 16
35 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16
36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
41 H 0.36 8.15 5.66 -40.82 -0.23 7.91 16
42 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16
43 H 0.10 2.10 7.01 -51.93 -0.36 1.74 16
44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
LS Contribution 357.56 15.07 5.39 5.39
Total: -1.00 -38.60 357.56 -8.13 -46.74
By element:
Atomic # 1 Polarization: 14.02 SS G_CDS: -7.08 Total: 6.94 kcal
Atomic # 6 Polarization: 12.24 SS G_CDS: -1.13 Total: 11.12 kcal
Atomic # 7 Polarization: -66.70 SS G_CDS: -0.78 Total: -67.47 kcal
Atomic # 8 Polarization: -20.13 SS G_CDS: 0.17 Total: -19.96 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -38.60 -8.13 -46.74 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207982782.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.034 kcal
(2) G-P(sol) polarization free energy of solvation -38.603 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.636 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds