Wall clock time and date at job start Tue Mar 31 2020 03:16:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.34775 * 120.00508 * 2 1
4 4 O 1.21597 * 119.99305 * 0.02562 * 3 2 1
5 5 N 1.34773 * 120.00524 * 179.97438 * 3 2 1
6 6 C 1.46506 * 120.00050 * 179.97438 * 5 3 2
7 7 C 1.52996 * 109.47102 * 180.02562 * 6 5 3
8 8 C 1.50700 * 109.46981 * 180.02562 * 7 6 5
9 9 O 1.21283 * 120.00281 * 359.97438 * 8 7 6
10 10 N 1.34773 * 119.99929 * 179.97438 * 8 7 6
11 11 C 1.46931 * 120.63029 * 359.97438 * 10 8 7
12 12 C 1.53200 * 108.77279 * 126.41292 * 11 10 8
13 13 C 1.53039 * 109.31160 * 54.63574 * 12 11 10
14 14 C 1.53046 * 109.52798 * 298.64112 * 13 12 11
15 15 H 1.08994 * 109.49581 * 301.40708 * 14 13 12
16 16 N 1.46501 * 109.49630 * 181.31171 * 14 13 12
17 17 C 1.36935 * 119.99704 * 155.00148 * 16 14 13
18 18 H 1.07997 * 120.00376 * 359.97438 * 17 16 14
19 19 C 1.38819 * 119.99849 * 179.97438 * 17 16 14
20 20 N 1.31607 * 120.00128 * 179.97438 * 19 17 16
21 21 Si 1.86807 * 119.99778 * 359.97438 * 19 17 16
22 22 H 1.48494 * 109.46785 * 90.00209 * 21 19 17
23 23 H 1.48498 * 109.46793 * 210.00150 * 21 19 17
24 24 H 1.48500 * 109.47066 * 330.00298 * 21 19 17
25 25 C 1.46928 * 120.63179 * 180.02562 * 10 8 7
26 26 H 1.09001 * 109.46847 * 299.99538 * 1 2 3
27 27 H 1.08992 * 109.47247 * 60.00205 * 1 2 3
28 28 H 1.09001 * 109.46952 * 180.02562 * 1 2 3
29 29 H 0.97006 * 120.00071 * 179.97438 * 2 1 3
30 30 H 0.96995 * 120.00102 * 0.02562 * 5 3 2
31 31 H 1.09006 * 109.46832 * 59.99871 * 6 5 3
32 32 H 1.08999 * 109.46809 * 300.00603 * 6 5 3
33 33 H 1.09000 * 109.47400 * 59.99756 * 7 6 5
34 34 H 1.09001 * 109.46877 * 299.99721 * 7 6 5
35 35 H 1.08998 * 109.58425 * 6.63242 * 11 10 8
36 36 H 1.08995 * 109.70793 * 246.26860 * 11 10 8
37 37 H 1.08997 * 109.49280 * 294.68615 * 12 11 10
38 38 H 1.08992 * 109.49396 * 174.58854 * 12 11 10
39 39 H 1.09002 * 109.46050 * 58.65698 * 13 12 11
40 40 H 1.09004 * 109.46034 * 178.62914 * 13 12 11
41 41 H 0.97005 * 119.99942 * 334.99860 * 16 14 13
42 42 H 0.97001 * 120.00347 * 180.02562 * 20 19 17
43 43 H 1.08999 * 109.58766 * 353.37877 * 25 10 8
44 44 H 1.09002 * 109.58364 * 113.65972 * 25 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 1.5309 2.2202 0.0005
5 7 3.4867 1.1671 0.0005
6 6 4.2192 2.4359 0.0000
7 6 5.7234 2.1563 0.0001
8 6 6.4769 3.4614 0.0001
9 8 5.8705 4.5118 -0.0004
10 7 7.8246 3.4614 0.0008
11 6 8.5732 2.1971 0.0020
12 6 9.5659 2.2108 -1.1649
13 6 10.4433 3.4609 -1.0683
14 6 9.5655 4.7109 -1.1658
15 1 9.0187 4.6986 -2.1086
16 7 10.4093 5.9069 -1.1048
17 6 9.9763 7.0795 -1.6638
18 1 9.0129 7.1226 -2.1500
19 6 10.7756 8.2130 -1.6055
20 7 10.3596 9.3399 -2.1431
21 14 12.4416 8.1387 -0.7637
22 1 13.4805 7.7602 -1.7550
23 1 12.7661 9.4694 -0.1901
24 1 12.4025 7.1274 0.3230
25 6 8.5732 4.7257 0.0014
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.9500 -0.8401 0.0004
30 1 3.9717 0.3271 0.0005
31 1 3.9555 3.0081 0.8895
32 1 3.9561 3.0069 -0.8905
33 1 5.9868 1.5843 -0.8896
34 1 5.9867 1.5852 0.8904
35 1 7.8817 1.3630 -0.1164
36 1 9.1154 2.0919 0.9416
37 1 9.0189 2.2222 -2.1076
38 1 10.1938 1.3211 -1.1187
39 1 10.9711 3.4614 -0.1146
40 1 11.1667 3.4607 -1.8837
41 1 11.2748 5.8681 -0.6683
42 1 10.9183 10.1319 -2.1027
43 1 7.8818 5.5599 -0.1172
44 1 9.1136 4.8299 0.9423
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207982782.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:44
Heat of formation + Delta-G solvation = -84.570192 kcal
Electronic energy + Delta-G solvation = -24150.120755 eV
Core-core repulsion = 20522.396866 eV
Total energy + Delta-G solvation = -3627.723889 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.179 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.36433 -40.86013 -38.83746 -36.37872 -36.31584 -35.57226 -34.03462 -32.88613
-32.14117 -30.30633 -27.74100 -26.38748 -25.67098 -24.15268 -23.09408 -22.08550
-21.75671 -20.23618 -19.60444 -19.31608 -18.32844 -17.21272 -17.09878 -16.83376
-16.60865 -16.39660 -15.87921 -15.51707 -15.37689 -15.20190 -14.95841 -14.94497
-14.49646 -14.21391 -13.99767 -13.81788 -13.70246 -13.38712 -13.01783 -12.97385
-12.81331 -12.53447 -12.44745 -12.16594 -11.90805 -11.85134 -11.72091 -11.52408
-11.33754 -11.13910 -10.83798 -10.45996 -9.83190 -9.78729 -9.25068 -8.05722
-5.41999 1.35047 1.41312 1.48198 1.58002 1.63845 2.11926 2.14074
2.46020 3.24794 3.32150 3.54156 3.61927 3.80749 4.00817 4.07108
4.12174 4.17177 4.31455 4.38544 4.46892 4.47912 4.67042 4.68339
4.77398 4.84319 4.88677 4.91714 4.96311 5.00291 5.06791 5.18160
5.38670 5.40154 5.49007 5.49342 5.52971 5.73736 6.02117 6.18157
6.49248 7.03481 7.13802 7.20960 7.58753 7.76716 7.98480 9.16202
Molecular weight = 298.18amu
Principal moments of inertia in cm(-1)
A = 0.027151 B = 0.002698 C = 0.002511
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1031.031941 B =10374.940915 C =11147.712863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.102 3.898
2 N -0.733 5.733
3 C 0.690 3.310
4 O -0.647 6.647
5 N -0.724 5.724
6 C 0.158 3.842
7 C -0.128 4.128
8 C 0.501 3.499
9 O -0.601 6.601
10 N -0.605 5.605
11 C 0.098 3.902
12 C -0.124 4.124
13 C -0.123 4.123
14 C 0.168 3.832
15 H 0.029 0.971
16 N -0.744 5.744
17 C -0.238 4.238
18 H 0.042 0.958
19 C -0.068 4.068
20 N -0.986 5.986
21 Si 0.966 3.034
22 H -0.272 1.272
23 H -0.297 1.297
24 H -0.246 1.246
25 C 0.104 3.896
26 H 0.043 0.957
27 H 0.042 0.958
28 H 0.118 0.882
29 H 0.418 0.582
30 H 0.420 0.580
31 H 0.045 0.955
32 H 0.040 0.960
33 H 0.139 0.861
34 H 0.144 0.856
35 H 0.128 0.872
36 H 0.089 0.911
37 H 0.062 0.938
38 H 0.116 0.884
39 H 0.075 0.925
40 H 0.066 0.934
41 H 0.370 0.630
42 H 0.259 0.741
43 H 0.038 0.962
44 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.558 -33.449 7.215 35.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.042 4.042
2 N -0.390 5.390
3 C 0.389 3.611
4 O -0.529 6.529
5 N -0.382 5.382
6 C 0.033 3.967
7 C -0.167 4.167
8 C 0.290 3.710
9 O -0.482 6.482
10 N -0.338 5.338
11 C -0.022 4.022
12 C -0.162 4.162
13 C -0.161 4.161
14 C 0.059 3.941
15 H 0.047 0.953
16 N -0.388 5.388
17 C -0.369 4.369
18 H 0.060 0.940
19 C -0.259 4.259
20 N -0.636 5.636
21 Si 0.792 3.208
22 H -0.198 1.198
23 H -0.224 1.224
24 H -0.170 1.170
25 C -0.022 4.022
26 H 0.062 0.938
27 H 0.061 0.939
28 H 0.136 0.864
29 H 0.255 0.745
30 H 0.258 0.742
31 H 0.063 0.937
32 H 0.059 0.941
33 H 0.157 0.843
34 H 0.162 0.838
35 H 0.146 0.854
36 H 0.107 0.893
37 H 0.081 0.919
38 H 0.134 0.866
39 H 0.094 0.906
40 H 0.085 0.915
41 H 0.204 0.796
42 H 0.068 0.932
43 H 0.056 0.944
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -8.557 -31.839 7.094 33.724
hybrid contribution 1.015 0.936 0.109 1.385
sum -7.542 -30.903 7.203 32.616
Atomic orbital electron populations
1.21535 0.77537 1.04196 1.00961 1.44764 1.08158 1.06645 1.79433
1.16324 0.82418 0.84538 0.77798 1.90946 1.69167 1.32919 1.59840
1.44702 1.03896 1.09916 1.79681 1.20595 0.90280 0.84700 1.01174
1.21762 0.91937 0.94426 1.08614 1.21324 0.82435 0.91959 0.75234
1.90763 1.68798 1.36439 1.52205 1.48317 1.05223 1.08205 1.72039
1.22230 0.95670 0.84380 0.99929 1.21902 0.97798 0.97799 0.98699
1.21819 0.98127 0.93236 1.02931 1.20678 0.91534 0.86897 0.94980
0.95287 1.42666 1.19843 1.07549 1.68726 1.18953 1.01376 0.88342
1.28211 0.93970 1.25670 1.03379 0.94866 1.01997 1.69922 1.39973
1.01676 1.52014 0.85260 0.79229 0.77208 0.79114 1.19825 1.22436
1.16997 1.22138 0.94338 0.85889 0.99858 0.93830 0.93931 0.86389
0.74471 0.74215 0.93675 0.94131 0.84313 0.83848 0.85417 0.89272
0.91919 0.86596 0.90597 0.91514 0.79555 0.93247 0.94368 0.91588
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.11 10.70 127.77 1.37 2.48 16
2 N -0.73 -8.60 5.72 -500.20 -2.86 -11.46 16
3 C 0.69 15.01 8.57 179.06 1.53 16.54 16
4 O -0.65 -22.51 16.34 -4.02 -0.07 -22.57 16
5 N -0.72 -10.77 5.56 -478.52 -2.66 -13.43 16
6 C 0.16 3.52 4.96 86.38 0.43 3.95 16
7 C -0.13 -1.82 4.16 29.85 0.12 -1.70 16
8 C 0.50 14.29 7.70 87.66 0.67 14.97 16
9 O -0.60 -25.48 15.40 -3.04 -0.05 -25.53 16
10 N -0.61 -15.76 2.97 -818.85 -2.43 -18.20 16
11 C 0.10 1.28 6.34 86.36 0.55 1.83 16
12 C -0.12 -1.83 6.08 30.67 0.19 -1.64 16
13 C -0.12 -3.02 5.36 30.62 0.16 -2.86 16
14 C 0.17 6.34 2.92 45.08 0.13 6.47 16
15 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16
16 N -0.74 -35.01 4.93 -322.54 -1.59 -36.60 16
17 C -0.24 -14.19 10.41 84.04 0.88 -13.32 16
18 H 0.04 2.86 8.06 -2.91 -0.02 2.84 16
19 C -0.07 -4.14 5.50 84.87 0.47 -3.67 16
20 N -0.99 -65.78 13.97 21.65 0.30 -65.48 16
21 Si 0.97 45.87 27.74 68.60 1.90 47.77 16
22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
23 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16
24 H -0.25 -10.27 6.52 99.48 0.65 -9.62 16
25 C 0.10 3.83 6.02 86.37 0.52 4.35 16
26 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16
27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16
28 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16
29 H 0.42 1.17 8.84 -92.70 -0.82 0.35 16
30 H 0.42 1.81 8.49 -92.71 -0.79 1.02 16
31 H 0.04 1.29 8.10 -2.38 -0.02 1.27 16
32 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16
33 H 0.14 0.98 7.69 -2.39 -0.02 0.96 16
34 H 0.14 0.84 7.94 -2.39 -0.02 0.82 16
35 H 0.13 0.51 5.93 -2.39 -0.01 0.50 16
36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
38 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16
39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
41 H 0.37 16.11 5.66 -92.70 -0.52 15.59 16
42 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16
43 H 0.04 1.83 7.01 -2.39 -0.02 1.82 16
44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
Total: -1.00 -98.55 357.56 -1.59 -100.14
By element:
Atomic # 1 Polarization: 19.13 SS G_CDS: -1.16 Total: 17.97 kcal
Atomic # 6 Polarization: 20.38 SS G_CDS: 7.02 Total: 27.40 kcal
Atomic # 7 Polarization: -135.94 SS G_CDS: -9.24 Total: -145.17 kcal
Atomic # 8 Polarization: -47.99 SS G_CDS: -0.11 Total: -48.10 kcal
Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.77 kcal
Total: -98.55 -1.59 -100.14 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207982782.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.574 kcal
(2) G-P(sol) polarization free energy of solvation -98.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.976 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.144 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds