Wall clock time and date at job start Tue Mar 31 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.46901 * 179.97438 * 18 17 16 20 20 N 1.46908 * 109.47068 * 179.97438 * 19 18 17 21 21 C 1.46956 * 110.99611 * 46.20381 * 20 19 18 22 22 C 1.53053 * 109.36286 * 183.18911 * 21 20 19 23 23 N 1.46961 * 109.36301 * 301.59838 * 22 21 20 24 24 C 1.46956 * 110.88010 * 59.31893 * 23 22 21 25 25 C 1.46958 * 110.99703 * 170.00097 * 20 19 18 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.00901 * 110.99892 * 296.04699 * 13 11 10 32 32 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 33 33 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 34 34 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 35 35 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 36 36 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 37 37 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 38 38 H 1.08999 * 109.47439 * 300.00077 * 19 18 17 39 39 H 1.08999 * 109.46919 * 60.00549 * 19 18 17 40 40 H 1.09000 * 109.48766 * 303.15224 * 21 20 19 41 41 H 1.09001 * 109.49288 * 63.21930 * 21 20 19 42 42 H 1.08996 * 109.48766 * 181.63172 * 22 21 20 43 43 H 1.08995 * 109.50678 * 61.57419 * 22 21 20 44 44 H 1.00901 * 110.99407 * 183.19051 * 23 22 21 45 45 H 1.09000 * 109.48615 * 180.71429 * 24 23 22 46 46 H 1.09001 * 109.50252 * 60.66046 * 24 23 22 47 47 H 1.09001 * 109.48726 * 296.77594 * 25 20 19 48 48 H 1.08998 * 109.48711 * 56.82710 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 6 5.3053 -8.8935 3.0408 20 7 5.7021 -9.0486 4.4468 21 6 4.5307 -9.0014 5.3328 22 6 4.9925 -9.0862 6.7895 23 7 5.7503 -10.3295 6.9889 24 6 6.9217 -10.3766 6.1027 25 6 6.4599 -10.2918 4.6460 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.0240 -4.4000 -1.3319 32 1 1.3488 -5.1023 -2.0514 33 1 2.6917 -5.9607 2.1187 34 1 3.4323 -8.4894 1.1021 35 1 4.7866 -7.3631 0.8454 36 1 4.7887 -6.8137 3.2632 37 1 3.4345 -7.9398 3.5204 38 1 4.8331 -9.8122 2.6928 39 1 6.1877 -8.6866 2.4354 40 1 3.9932 -8.0663 5.1756 41 1 3.8725 -9.8413 5.1105 42 1 4.1235 -9.0806 7.4474 43 1 5.6286 -8.2317 7.0200 44 1 6.0228 -10.4359 7.9545 45 1 7.4592 -11.3118 6.2600 46 1 7.5802 -9.5369 6.3250 47 1 5.8236 -11.1464 4.4159 48 1 7.3287 -10.2976 3.9878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332158504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:36 Heat of formation + Delta-G solvation = -46.365814 kcal Electronic energy + Delta-G solvation = -23879.194473 eV Core-core repulsion = 20388.960345 eV Total energy + Delta-G solvation = -3490.234129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.75834 -39.37308 -36.30235 -35.40796 -34.45278 -32.84911 -31.62381 -31.00064 -29.88055 -27.43818 -26.18686 -24.51659 -23.91119 -23.09053 -21.45277 -20.68857 -20.13175 -19.62350 -17.42022 -17.25054 -16.23124 -16.05661 -15.97895 -15.33221 -15.04216 -14.91453 -14.78412 -14.69528 -14.41932 -14.33238 -13.87388 -13.73503 -13.09361 -12.98909 -12.72804 -12.44255 -12.19863 -12.13321 -11.82642 -11.67276 -11.64552 -11.31671 -11.15494 -11.09497 -10.95455 -10.88193 -10.66719 -9.99465 -9.90954 -9.28191 -9.19533 -9.00668 -8.96331 -8.66532 -8.44864 -8.17833 -6.09230 -4.12187 2.96099 3.18968 3.25737 3.33780 3.37798 3.56062 3.76477 4.39002 4.45308 4.56139 4.67369 4.74605 4.77605 4.90542 5.00393 5.02537 5.07971 5.16463 5.20078 5.25711 5.27199 5.34160 5.37807 5.47711 5.54102 5.58936 5.59126 5.64693 5.77115 5.87401 5.91562 6.29022 6.44238 6.50659 6.53611 6.61711 6.69630 6.87593 6.89974 7.44272 7.51859 7.61260 7.72003 7.88111 7.91743 8.30773 8.48838 8.94082 9.52776 11.01701 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002340 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.342356 B =11961.197439 C =13002.569432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.540 6.540 16 N -0.735 5.735 17 C 0.123 3.877 18 C -0.135 4.135 19 C 0.060 3.940 20 N -0.540 5.540 21 C 0.048 3.952 22 C 0.057 3.943 23 N -0.694 5.694 24 C 0.059 3.941 25 C 0.056 3.944 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.354 0.646 32 H 0.345 0.655 33 H 0.401 0.599 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.344 0.656 45 H 0.078 0.922 46 H 0.040 0.960 47 H 0.042 0.958 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.669 -20.193 13.100 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.312 3.688 15 O -0.415 6.415 16 N -0.389 5.389 17 C -0.001 4.001 18 C -0.173 4.173 19 C -0.068 4.068 20 N -0.265 5.265 21 C -0.080 4.080 22 C -0.072 4.072 23 N -0.326 5.326 24 C -0.071 4.071 25 C -0.073 4.073 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.236 0.764 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.161 0.839 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.439 -21.232 12.340 26.684 hybrid contribution 0.801 2.155 0.466 2.346 sum 11.240 -19.077 12.806 25.579 Atomic orbital electron populations 1.69963 1.06012 1.26665 1.50567 1.25023 0.94882 0.99337 0.95161 0.86524 0.80105 0.83672 0.77652 1.19761 1.20945 1.20947 1.21219 0.93059 0.90883 1.50923 0.92669 1.19109 0.93733 0.91138 0.97364 1.22379 0.99861 0.93966 1.01497 1.21473 0.94680 0.92326 0.95577 0.88613 1.58743 1.18481 1.55870 1.03217 1.20897 0.81065 0.84419 0.82438 1.90629 1.60262 1.53497 1.37152 1.45972 1.47330 1.35349 1.10210 1.21178 0.93010 0.90046 0.95892 1.21940 0.99465 0.99837 0.96093 1.22013 0.98739 0.97232 0.88854 1.62224 1.22942 1.35944 1.05368 1.22306 0.92061 1.01676 0.91933 1.22020 0.98065 0.90631 0.96514 1.60514 1.24504 1.37357 1.10188 1.21987 0.91671 1.00968 0.92486 1.22161 0.98197 0.90547 0.96371 0.92940 0.96393 0.96321 0.92527 0.92697 0.83072 0.84147 0.76434 0.91816 0.91600 0.90088 0.90896 0.94343 0.90129 0.89473 0.93991 0.90234 0.94138 0.83879 0.90329 0.94185 0.93970 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.74 -27.89 -0.13 0.44 16 10 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 11 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 12 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 13 N -0.83 -14.51 8.94 -5.65 -0.05 -14.56 16 14 C 0.53 8.75 7.08 -10.98 -0.08 8.67 16 15 O -0.54 -10.71 16.25 5.56 0.09 -10.62 16 16 N -0.74 -9.35 5.56 -60.29 -0.33 -9.68 16 17 C 0.12 1.35 5.67 -4.05 -0.02 1.32 16 18 C -0.14 -1.12 4.59 -26.73 -0.12 -1.24 16 19 C 0.06 0.48 5.28 -3.82 -0.02 0.46 16 20 N -0.54 -4.49 4.86 -234.46 -1.14 -5.63 16 21 C 0.05 0.38 4.93 -3.77 -0.02 0.36 16 22 C 0.06 0.40 6.72 -3.76 -0.03 0.38 16 23 N -0.69 -4.79 6.90 -113.63 -0.78 -5.58 16 24 C 0.06 0.39 6.72 -3.77 -0.03 0.36 16 25 C 0.06 0.41 5.58 -3.77 -0.02 0.39 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.35 6.17 7.55 -39.29 -0.30 5.87 16 32 H 0.35 6.12 8.58 -39.29 -0.34 5.79 16 33 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.56 6.26 -51.93 -0.33 0.24 16 38 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.64 5.99 -51.93 -0.31 0.33 16 41 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.34 1.78 8.90 -39.29 -0.35 1.43 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -32.17 379.40 -10.64 -42.81 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -8.62 Total: 10.32 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.23 Total: -3.75 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -1.57 Total: -60.73 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.17 -10.64 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332158504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.559 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds