Wall clock time and date at job start Tue Mar 31 2020 04:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.46901 * 179.97438 * 18 17 16 20 20 N 1.46908 * 109.47068 * 179.97438 * 19 18 17 21 21 C 1.46956 * 110.99611 * 46.20381 * 20 19 18 22 22 C 1.53053 * 109.36286 * 183.18911 * 21 20 19 23 23 N 1.46961 * 109.36301 * 301.59838 * 22 21 20 24 24 C 1.46956 * 110.88010 * 59.31893 * 23 22 21 25 25 C 1.46958 * 110.99703 * 170.00097 * 20 19 18 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.00901 * 110.99892 * 296.04699 * 13 11 10 32 32 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 33 33 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 34 34 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 35 35 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 36 36 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 37 37 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 38 38 H 1.08999 * 109.47439 * 300.00077 * 19 18 17 39 39 H 1.08999 * 109.46919 * 60.00549 * 19 18 17 40 40 H 1.09000 * 109.48766 * 303.15224 * 21 20 19 41 41 H 1.09001 * 109.49288 * 63.21930 * 21 20 19 42 42 H 1.08996 * 109.48766 * 181.63172 * 22 21 20 43 43 H 1.08995 * 109.50678 * 61.57419 * 22 21 20 44 44 H 1.00901 * 110.99407 * 183.19051 * 23 22 21 45 45 H 1.09000 * 109.48615 * 180.71429 * 24 23 22 46 46 H 1.09001 * 109.50252 * 60.66046 * 24 23 22 47 47 H 1.09001 * 109.48726 * 296.77594 * 25 20 19 48 48 H 1.08998 * 109.48711 * 56.82710 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 6 5.3053 -8.8935 3.0408 20 7 5.7021 -9.0486 4.4468 21 6 4.5307 -9.0014 5.3328 22 6 4.9925 -9.0862 6.7895 23 7 5.7503 -10.3295 6.9889 24 6 6.9217 -10.3766 6.1027 25 6 6.4599 -10.2918 4.6460 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.0240 -4.4000 -1.3319 32 1 1.3488 -5.1023 -2.0514 33 1 2.6917 -5.9607 2.1187 34 1 3.4323 -8.4894 1.1021 35 1 4.7866 -7.3631 0.8454 36 1 4.7887 -6.8137 3.2632 37 1 3.4345 -7.9398 3.5204 38 1 4.8331 -9.8122 2.6928 39 1 6.1877 -8.6866 2.4354 40 1 3.9932 -8.0663 5.1756 41 1 3.8725 -9.8413 5.1105 42 1 4.1235 -9.0806 7.4474 43 1 5.6286 -8.2317 7.0200 44 1 6.0228 -10.4359 7.9545 45 1 7.4592 -11.3118 6.2600 46 1 7.5802 -9.5369 6.3250 47 1 5.8236 -11.1464 4.4159 48 1 7.3287 -10.2976 3.9878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332158504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:35 Heat of formation + Delta-G solvation = -73.468141 kcal Electronic energy + Delta-G solvation = -23880.369718 eV Core-core repulsion = 20388.960345 eV Total energy + Delta-G solvation = -3491.409374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94369 -40.09756 -37.34932 -36.76898 -35.34813 -34.83111 -32.36046 -31.69413 -31.65969 -28.59625 -27.41261 -25.83974 -24.62881 -24.18242 -22.34487 -22.20753 -21.02425 -20.63626 -18.85396 -18.06824 -18.00205 -17.09387 -16.84466 -16.52112 -16.08922 -15.86996 -15.74078 -15.71634 -15.46656 -15.36849 -15.09907 -14.76613 -14.46206 -14.42068 -13.95282 -13.48164 -13.38838 -13.20994 -12.94471 -12.84587 -12.67384 -12.55460 -12.49794 -12.23227 -11.99475 -11.80463 -11.73684 -11.70334 -11.53091 -11.28231 -10.74108 -10.56355 -10.10600 -9.64061 -9.54602 -9.27653 -8.21506 -6.31600 1.38757 1.40400 1.52104 1.62067 2.11798 2.40118 2.88694 3.12206 3.27869 3.75119 3.78213 3.85164 3.97323 3.98852 4.11493 4.13946 4.16289 4.26409 4.37247 4.39363 4.43564 4.52008 4.57266 4.63616 4.67663 4.75543 4.85032 4.85474 4.90980 5.01860 5.05200 5.09358 5.13701 5.16927 5.44918 5.47466 5.66288 5.81216 5.90196 6.00301 6.07824 6.11182 6.21671 6.45344 6.47840 6.54521 6.84181 7.24209 7.37502 8.89415 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002340 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.342356 B =11961.197439 C =13002.569432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.121 4.121 11 C 0.081 3.919 12 H 0.111 0.889 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.574 6.574 16 N -0.719 5.719 17 C 0.125 3.875 18 C -0.121 4.121 19 C 0.062 3.938 20 N -0.547 5.547 21 C 0.047 3.953 22 C 0.058 3.942 23 N -0.702 5.702 24 C 0.060 3.940 25 C 0.053 3.947 26 H 0.264 0.736 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.353 0.647 32 H 0.343 0.657 33 H 0.414 0.586 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.033 0.967 42 H 0.089 0.911 43 H 0.035 0.965 44 H 0.353 0.647 45 H 0.092 0.908 46 H 0.035 0.965 47 H 0.034 0.966 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.697 -20.346 14.328 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.161 4.161 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.362 5.362 14 C 0.312 3.688 15 O -0.453 6.453 16 N -0.372 5.372 17 C 0.001 3.999 18 C -0.158 4.158 19 C -0.066 4.066 20 N -0.272 5.272 21 C -0.081 4.081 22 C -0.072 4.072 23 N -0.334 5.334 24 C -0.070 4.070 25 C -0.075 4.075 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.251 0.749 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.172 0.828 45 H 0.110 0.890 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.482 -21.396 13.618 27.840 hybrid contribution 0.477 2.158 0.110 2.213 sum 11.959 -19.238 13.728 26.487 Atomic orbital electron populations 1.70070 1.07462 1.27682 1.51453 1.25876 0.95755 1.03002 0.94818 0.85481 0.79005 0.79277 0.77785 1.19016 1.20610 1.20239 1.21646 0.93339 0.92454 1.50657 0.92742 1.18977 0.94050 0.91998 0.95767 1.22132 0.98778 0.93712 1.01435 1.21421 0.94795 0.91316 0.95941 0.87160 1.58762 1.18432 1.55643 1.03400 1.20731 0.80914 0.84097 0.83069 1.90618 1.61463 1.54708 1.38530 1.45875 1.46494 1.35344 1.09454 1.21259 0.92104 0.88990 0.97594 1.21805 0.99882 1.00024 0.94134 1.21973 0.98673 0.96981 0.88997 1.62260 1.23182 1.36425 1.05359 1.22341 0.91851 1.01519 0.92395 1.22018 0.98406 0.90535 0.96198 1.60524 1.24704 1.37220 1.10975 1.21997 0.91557 1.01503 0.91899 1.22218 0.98206 0.89853 0.97196 0.92745 0.97965 0.97846 0.91421 0.93830 0.83251 0.84372 0.74944 0.92253 0.92348 0.89947 0.89959 0.94481 0.90035 0.88952 0.94913 0.89223 0.94652 0.82809 0.88964 0.94635 0.94800 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16 2 C 0.00 0.21 5.46 84.65 0.46 0.68 16 3 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.54 -29.70 9.11 25.60 0.23 -29.46 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.42 4.74 29.85 0.14 1.57 16 10 C -0.12 -4.66 4.78 30.59 0.15 -4.52 16 11 C 0.08 2.68 3.21 44.17 0.14 2.82 16 12 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 13 N -0.83 -28.84 8.94 -171.80 -1.54 -30.38 16 14 C 0.53 16.94 7.08 87.66 0.62 17.56 16 15 O -0.57 -22.49 16.25 -3.01 -0.05 -22.54 16 16 N -0.72 -17.08 5.56 -463.05 -2.57 -19.65 16 17 C 0.12 2.54 5.67 86.38 0.49 3.03 16 18 C -0.12 -1.77 4.59 30.59 0.14 -1.63 16 19 C 0.06 0.91 5.28 86.30 0.46 1.37 16 20 N -0.55 -8.36 4.86 -895.68 -4.35 -12.71 16 21 C 0.05 0.67 4.93 86.31 0.43 1.10 16 22 C 0.06 0.74 6.72 86.31 0.58 1.32 16 23 N -0.70 -8.69 6.90 -513.43 -3.54 -12.23 16 24 C 0.06 0.71 6.72 86.31 0.58 1.29 16 25 C 0.05 0.73 5.58 86.31 0.48 1.21 16 26 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 28 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.35 12.35 7.55 -89.69 -0.68 11.67 16 32 H 0.34 12.21 8.58 -89.69 -0.77 11.44 16 33 H 0.41 7.84 8.47 -92.71 -0.79 7.05 16 34 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.08 1.08 6.26 -2.39 -0.01 1.07 16 38 H 0.04 0.56 8.08 -2.39 -0.02 0.54 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 1.18 5.99 -2.39 -0.01 1.17 16 41 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 43 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.35 3.13 8.90 -89.69 -0.80 2.33 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -67.57 379.40 -6.90 -74.48 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -2.06 Total: 35.26 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.90 Total: -3.66 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -11.72 Total: -128.85 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -67.57 -6.90 -74.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332158504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.010 kcal (2) G-P(sol) polarization free energy of solvation -67.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds