Wall clock time and date at job start Tue Mar 31 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 120.00205 * 2 1 4 4 H 1.48501 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46895 * 300.00102 * 3 2 1 6 6 H 1.48502 * 109.47031 * 60.00075 * 3 2 1 7 7 C 1.37877 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47030 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47181 * 54.99747 * 11 10 9 13 13 N 1.46897 * 109.47202 * 294.99649 * 11 10 9 14 14 C 1.50700 * 109.47016 * 174.99757 * 11 10 9 15 15 O 1.21284 * 120.00221 * 100.00495 * 14 11 10 16 16 N 1.34777 * 120.00020 * 279.99734 * 14 11 10 17 17 C 1.46500 * 119.99675 * 180.02562 * 16 14 11 18 18 C 1.53007 * 109.46967 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47173 * 180.02562 * 18 17 16 20 20 N 1.46900 * 109.47230 * 179.97438 * 19 18 17 21 21 C 1.46963 * 110.99608 * 46.19591 * 20 19 18 22 22 C 1.53061 * 109.36120 * 183.18785 * 21 20 19 23 23 N 1.46956 * 109.36269 * 301.60014 * 22 21 20 24 24 C 1.46959 * 110.88047 * 59.32350 * 23 22 21 25 25 C 1.46956 * 111.00354 * 169.99485 * 20 19 18 26 26 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47250 * 60.00158 * 9 7 2 28 28 H 1.08996 * 109.47205 * 299.99688 * 9 7 2 29 29 H 1.09000 * 109.47052 * 59.99973 * 10 9 7 30 30 H 1.09004 * 109.46613 * 300.00135 * 10 9 7 31 31 H 1.00892 * 111.00350 * 300.00341 * 13 11 10 32 32 H 1.00899 * 110.99736 * 63.95861 * 13 11 10 33 33 H 0.97001 * 120.00085 * 0.02562 * 16 14 11 34 34 H 1.08994 * 109.47755 * 60.00537 * 17 16 14 35 35 H 1.09003 * 109.47449 * 299.99522 * 17 16 14 36 36 H 1.08993 * 109.47342 * 59.99208 * 18 17 16 37 37 H 1.09011 * 109.46490 * 299.99675 * 18 17 16 38 38 H 1.09001 * 109.47173 * 59.99255 * 19 18 17 39 39 H 1.08995 * 109.46854 * 299.99514 * 19 18 17 40 40 H 1.09000 * 109.49332 * 303.15252 * 21 20 19 41 41 H 1.08997 * 109.48746 * 63.22950 * 21 20 19 42 42 H 1.09001 * 109.48319 * 181.63151 * 22 21 20 43 43 H 1.08994 * 109.50172 * 61.58006 * 22 21 20 44 44 H 1.00902 * 110.99584 * 183.18699 * 23 22 21 45 45 H 1.09001 * 109.48442 * 180.70717 * 24 23 22 46 46 H 1.09002 * 109.50679 * 60.65411 * 24 23 22 47 47 H 1.08997 * 109.48658 * 296.78215 * 25 20 19 48 48 H 1.08997 * 109.48492 * 56.82156 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0012 12 1 0.7889 -5.0071 -0.8414 13 7 0.7271 -5.1183 1.2556 14 6 2.4549 -6.1298 -0.1214 15 8 2.7856 -6.7533 0.8649 16 7 2.9591 -6.4591 -1.3272 17 6 3.9062 -7.5703 -1.4464 18 6 4.3211 -7.7320 -2.9103 19 6 5.3098 -8.8930 -3.0349 20 7 5.7076 -9.0486 -4.4404 21 6 6.0437 -7.7494 -5.0395 22 6 6.3750 -7.9443 -6.5211 23 7 7.4957 -8.8862 -6.6499 24 6 7.1595 -10.1854 -6.0508 25 6 6.8283 -9.9905 -4.5694 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8711 -3.6039 0.8923 30 1 2.8725 -3.6047 -0.8877 31 1 1.3460 -5.1024 2.0523 32 1 0.0222 -4.4003 1.3309 33 1 2.6948 -5.9603 -2.1161 34 1 3.4341 -8.4891 -1.0987 35 1 4.7880 -7.3629 -0.8401 36 1 4.7933 -6.8132 -3.2577 37 1 3.4394 -7.9393 -3.5170 38 1 4.8370 -9.8117 -2.6875 39 1 6.1913 -8.6862 -2.4282 40 1 5.1940 -7.0736 -4.9428 41 1 6.9068 -7.3250 -4.5268 42 1 6.6527 -6.9863 -6.9606 43 1 5.5032 -8.3432 -7.0395 44 1 7.7689 -8.9931 -7.6154 45 1 8.0092 -10.8612 -6.1477 46 1 6.2965 -10.6103 -6.5636 47 1 7.7002 -9.5914 -4.0512 48 1 6.5507 -10.9483 -4.1295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332158507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:41 Heat of formation + Delta-G solvation = -73.483453 kcal Electronic energy + Delta-G solvation = -23916.365328 eV Core-core repulsion = 20424.955290 eV Total energy + Delta-G solvation = -3491.410038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94314 -40.09914 -37.35036 -36.76937 -35.34912 -34.83388 -32.36157 -31.69639 -31.66148 -28.59797 -27.41549 -25.84050 -24.63021 -24.18319 -22.34616 -22.20814 -21.02848 -20.63427 -18.85516 -18.07006 -18.00440 -17.09497 -16.84480 -16.52053 -16.05706 -15.95118 -15.73921 -15.67148 -15.45155 -15.38990 -15.07602 -14.80138 -14.54892 -14.31219 -13.96387 -13.51395 -13.35858 -13.21416 -12.95134 -12.85070 -12.67216 -12.55525 -12.49948 -12.23483 -11.98759 -11.81030 -11.73985 -11.70758 -11.53255 -11.28424 -10.74166 -10.56616 -10.10629 -9.64010 -9.54633 -9.28384 -8.21643 -6.31798 1.38538 1.40269 1.51881 1.62016 2.11771 2.39901 2.88282 3.12100 3.27858 3.75332 3.77851 3.85096 3.97081 3.98806 4.11320 4.14115 4.16068 4.26147 4.36922 4.39025 4.43664 4.52159 4.57315 4.63628 4.67098 4.75586 4.84902 4.85224 4.90832 5.01828 5.05027 5.09002 5.13929 5.16401 5.44838 5.47177 5.66106 5.80995 5.90096 5.99655 6.07868 6.10588 6.21430 6.45511 6.47901 6.54502 6.83969 7.24178 7.37340 8.89299 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.002466 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.923343 B =11351.803172 C =12814.438479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.121 4.121 11 C 0.080 3.920 12 H 0.111 0.889 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.574 6.574 16 N -0.719 5.719 17 C 0.125 3.875 18 C -0.121 4.121 19 C 0.062 3.938 20 N -0.545 5.545 21 C 0.046 3.954 22 C 0.059 3.941 23 N -0.703 5.703 24 C 0.060 3.940 25 C 0.053 3.947 26 H 0.264 0.736 27 H 0.003 0.997 28 H 0.002 0.998 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.343 0.657 32 H 0.353 0.647 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.092 0.908 41 H 0.029 0.971 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.353 0.647 45 H 0.092 0.908 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.539 -19.675 -14.174 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.129 0.871 13 N -0.362 5.362 14 C 0.312 3.688 15 O -0.453 6.453 16 N -0.372 5.372 17 C 0.001 3.999 18 C -0.158 4.158 19 C -0.067 4.067 20 N -0.270 5.270 21 C -0.082 4.082 22 C -0.071 4.071 23 N -0.336 5.336 24 C -0.069 4.069 25 C -0.075 4.075 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.172 0.828 45 H 0.110 0.890 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.336 -20.715 -13.461 27.613 hybrid contribution 0.518 2.201 -0.095 2.263 sum 12.854 -18.514 -13.556 26.301 Atomic orbital electron populations 1.70062 1.07469 1.27695 1.51433 1.25870 0.95745 1.02990 0.94809 0.85488 0.79010 0.79294 0.77792 1.19012 1.20215 1.20628 1.21644 0.93325 0.92452 1.50686 0.92754 1.18979 0.94049 0.91993 0.95773 1.22131 0.98780 0.93730 1.01405 1.21420 0.94782 0.91304 0.95970 0.87144 1.58757 1.18409 1.55651 1.03405 1.20732 0.80906 0.84105 0.83071 1.90621 1.61515 1.54709 1.38483 1.45874 1.46464 1.35346 1.09477 1.21259 0.91987 0.89183 0.97517 1.21807 1.00518 0.99284 0.94240 1.21980 0.97448 0.99115 0.88118 1.62275 1.37350 1.10852 1.16484 1.22346 0.99900 0.91146 0.94797 1.22008 0.92249 0.97141 0.95690 1.60515 1.38198 1.11057 1.23796 1.21996 1.00140 0.90847 0.93924 1.22225 0.91487 0.96910 0.96910 0.92735 0.97836 0.97964 0.93850 0.91442 0.84381 0.83250 0.74941 0.91870 0.92730 0.90373 0.89526 0.89703 0.94788 0.88947 0.95219 0.89411 0.94412 0.82790 0.88990 0.94443 0.95010 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.67 9.11 25.60 0.23 -29.44 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.42 4.74 29.85 0.14 1.56 16 10 C -0.12 -4.65 4.78 30.59 0.15 -4.51 16 11 C 0.08 2.68 3.21 44.17 0.14 2.82 16 12 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 13 N -0.83 -28.84 8.94 -171.81 -1.54 -30.37 16 14 C 0.53 16.94 7.08 87.66 0.62 17.56 16 15 O -0.57 -22.50 16.25 -3.04 -0.05 -22.55 16 16 N -0.72 -17.08 5.56 -463.05 -2.57 -19.66 16 17 C 0.12 2.54 5.67 86.38 0.49 3.03 16 18 C -0.12 -1.77 4.59 30.60 0.14 -1.63 16 19 C 0.06 0.91 5.28 86.30 0.46 1.36 16 20 N -0.54 -8.31 4.86 -895.71 -4.35 -12.66 16 21 C 0.05 0.69 4.93 86.31 0.43 1.12 16 22 C 0.06 0.77 6.72 86.31 0.58 1.35 16 23 N -0.70 -8.98 6.90 -513.42 -3.54 -12.52 16 24 C 0.06 0.72 6.72 86.31 0.58 1.30 16 25 C 0.05 0.73 5.58 86.31 0.48 1.21 16 26 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.34 12.21 8.58 -89.70 -0.77 11.44 16 32 H 0.35 12.35 7.55 -89.69 -0.68 11.67 16 33 H 0.41 7.84 8.47 -92.71 -0.79 7.05 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.12 6.26 -2.39 -0.01 1.10 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.03 0.54 8.08 -2.39 -0.02 0.52 16 40 H 0.09 1.25 5.99 -2.39 -0.01 1.24 16 41 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.35 3.24 8.90 -89.69 -0.80 2.44 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 46 H 0.04 0.46 8.14 -2.39 -0.02 0.45 16 47 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -67.52 379.40 -6.90 -74.42 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -2.06 Total: 35.49 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.90 Total: -3.56 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -11.72 Total: -129.07 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.52 -6.90 -74.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332158507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.941 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds