Wall clock time and date at job start Tue Mar 31 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47153 * 2 1 4 4 N 1.46498 * 109.47475 * 119.99708 * 2 1 3 5 5 C 1.34771 * 120.00462 * 275.00723 * 4 2 1 6 6 O 1.21591 * 119.99581 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00414 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00256 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47485 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47265 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00366 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00040 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99995 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00314 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47473 * 179.97438 * 14 12 10 16 16 H 1.48506 * 109.47027 * 299.99963 * 14 12 10 17 17 H 1.48498 * 109.47338 * 59.99599 * 14 12 10 18 18 C 1.52999 * 109.47120 * 240.00127 * 2 1 3 19 19 H 1.08993 * 109.49023 * 59.40955 * 18 2 1 20 20 C 1.53051 * 109.49082 * 299.33788 * 18 2 1 21 21 N 1.46955 * 109.36717 * 181.63329 * 20 18 2 22 22 C 1.46893 * 110.99961 * 183.19031 * 21 20 18 23 23 C 1.46954 * 110.87846 * 59.32272 * 21 20 18 24 24 C 1.53051 * 109.36667 * 300.67693 * 23 21 20 25 25 N 1.46955 * 109.36231 * 58.40359 * 24 23 21 26 26 C 1.46900 * 111.00221 * 176.81273 * 25 24 23 27 27 H 1.09000 * 109.47476 * 297.82795 * 1 2 3 28 28 H 1.08998 * 109.47245 * 57.82770 * 1 2 3 29 29 H 1.09010 * 109.46902 * 177.83101 * 1 2 3 30 30 H 0.97007 * 119.99519 * 95.00090 * 4 2 1 31 31 H 0.97002 * 120.00351 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47485 * 59.99192 * 8 7 5 33 33 H 1.09006 * 109.46888 * 299.99743 * 8 7 5 34 34 H 1.09005 * 109.46972 * 59.99592 * 9 8 7 35 35 H 1.08996 * 109.46587 * 300.00205 * 9 8 7 36 36 H 0.96997 * 120.00386 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.48617 * 301.60362 * 20 18 2 38 38 H 1.08999 * 109.48715 * 61.66315 * 20 18 2 39 39 H 1.09004 * 109.47040 * 292.24562 * 22 21 20 40 40 H 1.08999 * 109.47618 * 52.24741 * 22 21 20 41 41 H 1.09001 * 109.47231 * 172.24559 * 22 21 20 42 42 H 1.09002 * 109.48615 * 180.71594 * 23 21 20 43 43 H 1.08994 * 109.51240 * 60.65953 * 23 21 20 44 44 H 1.09000 * 109.49064 * 298.43963 * 24 23 21 45 45 H 1.08996 * 109.51019 * 178.38473 * 24 23 21 46 46 H 1.08996 * 109.47341 * 190.83355 * 26 25 24 47 47 H 1.09001 * 109.47277 * 310.83113 * 26 25 24 48 48 H 1.09005 * 109.46917 * 70.83086 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1616 2.4116 7 7 2.5958 -0.6536 3.4577 8 6 2.7362 0.0773 4.7195 9 6 3.2594 -0.8692 5.8018 10 6 3.4044 -0.1172 7.0996 11 1 3.1493 0.9311 7.1477 12 6 3.8636 -0.7672 8.2255 13 7 4.1747 -2.0436 8.1669 14 14 4.0427 0.1648 9.8344 15 1 4.5506 -0.7538 10.8848 16 1 4.9986 1.2867 9.6528 17 1 2.7207 0.7025 10.2448 18 6 2.0399 -0.7212 -1.2492 19 1 1.6682 -0.2138 -2.1393 20 6 1.5437 -2.1690 -1.2414 21 7 2.0672 -2.8700 -2.4221 22 6 1.5510 -4.2435 -2.4907 23 6 3.5367 -2.8587 -2.4291 24 6 4.0331 -1.4109 -2.4370 25 7 3.5095 -0.7099 -1.2563 26 6 4.0257 0.6637 -1.1877 27 1 -0.3634 0.4797 0.9088 28 1 -0.3633 0.5472 -0.8698 29 1 -0.3633 -1.0270 -0.0389 30 1 2.2491 -1.6317 1.1526 31 1 2.8260 -1.5950 3.4143 32 1 1.7659 0.4721 5.0207 33 1 3.4380 0.9007 4.5863 34 1 4.2297 -1.2643 5.5009 35 1 2.5574 -1.6923 5.9348 36 1 4.4975 -2.5011 8.9590 37 1 1.8929 -2.6682 -0.3376 38 1 0.4540 -2.1800 -1.2654 39 1 1.9651 -4.8288 -1.6696 40 1 0.4639 -4.2275 -2.4133 41 1 1.8409 -4.6937 -3.4402 42 1 3.9000 -3.3725 -3.3192 43 1 3.9089 -3.3659 -1.5391 44 1 3.6838 -0.9117 -3.3409 45 1 5.1227 -1.3996 -2.4133 46 1 3.7829 1.0950 -0.2166 47 1 5.1076 0.6523 -1.3199 48 1 3.5697 1.2630 -1.9757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346377142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:51 Heat of formation + Delta-G solvation = -21.430607 kcal Electronic energy + Delta-G solvation = -25229.830557 eV Core-core repulsion = 21740.677700 eV Total energy + Delta-G solvation = -3489.152857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41472 -39.07396 -36.28001 -35.18139 -34.48222 -32.82965 -31.59042 -29.91920 -29.30312 -28.66789 -25.63630 -25.05015 -24.43806 -23.17666 -21.56483 -20.96177 -20.57467 -19.38740 -18.06182 -16.48817 -16.33528 -16.00149 -15.76086 -15.20695 -14.99817 -14.83911 -14.74800 -14.45703 -14.23247 -13.95004 -13.60166 -13.30104 -13.16352 -12.75095 -12.74171 -12.40125 -12.26932 -12.22678 -11.97731 -11.81244 -11.62595 -11.44233 -11.14756 -11.05228 -10.97574 -10.61834 -10.51171 -10.25126 -9.83413 -9.49572 -9.22760 -8.87976 -8.74735 -8.53462 -8.43499 -8.15055 -6.05667 -4.08133 3.15493 3.33722 3.37260 3.41247 3.53619 3.59110 3.74183 4.41439 4.43081 4.55969 4.70469 4.80289 4.87040 4.94595 5.01406 5.13084 5.17587 5.21077 5.28005 5.31279 5.35182 5.37149 5.44770 5.53563 5.54995 5.59060 5.65506 5.73690 5.84457 5.94629 6.17063 6.37908 6.46481 6.58023 6.60933 6.74031 6.83554 6.84371 6.89317 7.10685 7.37366 7.62993 7.68810 7.94007 8.31223 8.56011 8.97222 9.12910 9.56310 11.06016 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002831 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.935493 B = 9888.866213 C =10188.931710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.169 3.831 3 H 0.091 0.909 4 N -0.736 5.736 5 C 0.700 3.300 6 O -0.603 6.603 7 N -0.740 5.740 8 C 0.142 3.858 9 C 0.014 3.986 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.287 1.287 16 H -0.276 1.276 17 H -0.276 1.276 18 C 0.080 3.920 19 H 0.062 0.938 20 C 0.059 3.941 21 N -0.545 5.545 22 C 0.024 3.976 23 C 0.055 3.945 24 C 0.057 3.943 25 N -0.535 5.535 26 C 0.023 3.977 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.393 0.607 31 H 0.392 0.608 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.028 0.972 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -3.340 -25.101 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.108 0.892 4 N -0.393 5.393 5 C 0.400 3.600 6 O -0.482 6.482 7 N -0.393 5.393 8 C 0.019 3.981 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.213 1.213 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.030 4.030 19 H 0.080 0.920 20 C -0.069 4.069 21 N -0.270 5.270 22 C -0.124 4.124 23 C -0.074 4.074 24 C -0.071 4.071 25 N -0.259 5.259 26 C -0.125 4.125 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.228 0.772 31 H 0.225 0.775 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.898 -2.386 -24.911 25.327 hybrid contribution 0.411 -0.544 0.872 1.107 sum -3.487 -2.931 -24.039 24.467 Atomic orbital electron populations 1.22265 0.95309 1.02069 1.02822 1.20716 0.93405 0.97100 0.82530 0.89154 1.45066 1.72238 1.13509 1.08466 1.16054 0.78419 0.85124 0.80381 1.90870 1.57961 1.14547 1.84855 1.45506 1.69951 1.13848 1.09976 1.21544 1.00218 0.95523 0.80832 1.19311 0.96541 0.94606 0.91939 1.21027 1.44268 0.96571 0.94051 0.92296 1.24992 0.95237 0.94915 0.99148 1.69947 1.44652 1.09148 1.29667 0.86576 0.78597 0.79592 0.82786 1.21283 1.20115 1.20124 1.22007 0.87849 0.95860 0.97239 0.91972 1.22282 0.99945 0.93268 0.91438 1.62163 1.08190 1.16269 1.40355 1.22354 1.00583 0.88328 1.01111 1.22195 0.87318 0.96576 1.01264 1.22174 0.99671 0.93779 0.91518 1.62094 1.07133 1.16785 1.39935 1.22416 1.00159 0.88068 1.01856 0.91337 0.91932 0.92387 0.77216 0.77545 0.92942 0.92931 0.96023 0.96055 0.92845 0.93810 0.89639 0.95313 0.91308 0.91313 0.90322 0.93696 0.94100 0.90110 0.90435 0.91412 0.95535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.21 37.15 0.34 -1.39 16 2 C 0.17 1.95 1.89 -67.93 -0.13 1.82 16 3 H 0.09 1.22 5.92 -51.92 -0.31 0.91 16 4 N -0.74 -9.70 4.85 -58.68 -0.28 -9.98 16 5 C 0.70 12.46 8.53 -86.93 -0.74 11.71 16 6 O -0.60 -12.96 16.01 5.29 0.08 -12.88 16 7 N -0.74 -13.52 5.56 -65.22 -0.36 -13.89 16 8 C 0.14 3.13 5.61 -4.04 -0.02 3.10 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 14 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.08 0.76 1.81 -67.65 -0.12 0.64 16 19 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 20 C 0.06 0.52 4.36 -3.77 -0.02 0.50 16 21 N -0.55 -4.58 4.97 -242.76 -1.21 -5.79 16 22 C 0.02 0.17 9.63 60.06 0.58 0.75 16 23 C 0.05 0.44 5.62 -3.77 -0.02 0.42 16 24 C 0.06 0.48 5.61 -3.77 -0.02 0.46 16 25 N -0.53 -5.33 4.63 -234.73 -1.09 -6.42 16 26 C 0.02 0.23 8.96 60.06 0.54 0.77 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 6.37 -51.92 -0.33 0.20 16 30 H 0.39 4.57 6.82 -40.82 -0.28 4.30 16 31 H 0.39 6.31 8.49 -40.82 -0.35 5.96 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.04 0.41 6.42 -51.93 -0.33 0.08 16 38 H 0.09 0.69 6.44 -51.93 -0.33 0.36 16 39 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 46 H 0.08 0.96 6.66 -51.93 -0.35 0.61 16 47 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 48 H 0.03 0.24 8.11 -51.93 -0.42 -0.18 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -32.07 374.15 -10.23 -42.30 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.57 Total: 4.55 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.17 Total: 5.56 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -2.20 Total: -61.78 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.07 -10.23 -42.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346377142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.871 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds