Wall clock time and date at job start Tue Mar 31 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47153 * 2 1 4 4 N 1.46498 * 109.47475 * 119.99708 * 2 1 3 5 5 C 1.34771 * 120.00462 * 275.00723 * 4 2 1 6 6 O 1.21591 * 119.99581 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00414 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00256 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47485 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47265 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00366 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00040 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99995 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00314 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47473 * 179.97438 * 14 12 10 16 16 H 1.48506 * 109.47027 * 299.99963 * 14 12 10 17 17 H 1.48498 * 109.47338 * 59.99599 * 14 12 10 18 18 C 1.52999 * 109.47120 * 240.00127 * 2 1 3 19 19 H 1.08993 * 109.49023 * 59.40955 * 18 2 1 20 20 C 1.53051 * 109.49082 * 299.33788 * 18 2 1 21 21 N 1.46955 * 109.36717 * 181.63329 * 20 18 2 22 22 C 1.46893 * 110.99961 * 183.19031 * 21 20 18 23 23 C 1.46954 * 110.87846 * 59.32272 * 21 20 18 24 24 C 1.53051 * 109.36667 * 300.67693 * 23 21 20 25 25 N 1.46955 * 109.36231 * 58.40359 * 24 23 21 26 26 C 1.46900 * 111.00221 * 176.81273 * 25 24 23 27 27 H 1.09000 * 109.47476 * 297.82795 * 1 2 3 28 28 H 1.08998 * 109.47245 * 57.82770 * 1 2 3 29 29 H 1.09010 * 109.46902 * 177.83101 * 1 2 3 30 30 H 0.97007 * 119.99519 * 95.00090 * 4 2 1 31 31 H 0.97002 * 120.00351 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47485 * 59.99192 * 8 7 5 33 33 H 1.09006 * 109.46888 * 299.99743 * 8 7 5 34 34 H 1.09005 * 109.46972 * 59.99592 * 9 8 7 35 35 H 1.08996 * 109.46587 * 300.00205 * 9 8 7 36 36 H 0.96997 * 120.00386 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.48617 * 301.60362 * 20 18 2 38 38 H 1.08999 * 109.48715 * 61.66315 * 20 18 2 39 39 H 1.09004 * 109.47040 * 292.24562 * 22 21 20 40 40 H 1.08999 * 109.47618 * 52.24741 * 22 21 20 41 41 H 1.09001 * 109.47231 * 172.24559 * 22 21 20 42 42 H 1.09002 * 109.48615 * 180.71594 * 23 21 20 43 43 H 1.08994 * 109.51240 * 60.65953 * 23 21 20 44 44 H 1.09000 * 109.49064 * 298.43963 * 24 23 21 45 45 H 1.08996 * 109.51019 * 178.38473 * 24 23 21 46 46 H 1.08996 * 109.47341 * 190.83355 * 26 25 24 47 47 H 1.09001 * 109.47277 * 310.83113 * 26 25 24 48 48 H 1.09005 * 109.46917 * 70.83086 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1616 2.4116 7 7 2.5958 -0.6536 3.4577 8 6 2.7362 0.0773 4.7195 9 6 3.2594 -0.8692 5.8018 10 6 3.4044 -0.1172 7.0996 11 1 3.1493 0.9311 7.1477 12 6 3.8636 -0.7672 8.2255 13 7 4.1747 -2.0436 8.1669 14 14 4.0427 0.1648 9.8344 15 1 4.5506 -0.7538 10.8848 16 1 4.9986 1.2867 9.6528 17 1 2.7207 0.7025 10.2448 18 6 2.0399 -0.7212 -1.2492 19 1 1.6682 -0.2138 -2.1393 20 6 1.5437 -2.1690 -1.2414 21 7 2.0672 -2.8700 -2.4221 22 6 1.5510 -4.2435 -2.4907 23 6 3.5367 -2.8587 -2.4291 24 6 4.0331 -1.4109 -2.4370 25 7 3.5095 -0.7099 -1.2563 26 6 4.0257 0.6637 -1.1877 27 1 -0.3634 0.4797 0.9088 28 1 -0.3633 0.5472 -0.8698 29 1 -0.3633 -1.0270 -0.0389 30 1 2.2491 -1.6317 1.1526 31 1 2.8260 -1.5950 3.4143 32 1 1.7659 0.4721 5.0207 33 1 3.4380 0.9007 4.5863 34 1 4.2297 -1.2643 5.5009 35 1 2.5574 -1.6923 5.9348 36 1 4.4975 -2.5011 8.9590 37 1 1.8929 -2.6682 -0.3376 38 1 0.4540 -2.1800 -1.2654 39 1 1.9651 -4.8288 -1.6696 40 1 0.4639 -4.2275 -2.4133 41 1 1.8409 -4.6937 -3.4402 42 1 3.9000 -3.3725 -3.3192 43 1 3.9089 -3.3659 -1.5391 44 1 3.6838 -0.9117 -3.3409 45 1 5.1227 -1.3996 -2.4133 46 1 3.7829 1.0950 -0.2166 47 1 5.1076 0.6523 -1.3199 48 1 3.5697 1.2630 -1.9757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346377142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:50 Heat of formation + Delta-G solvation = -46.642506 kcal Electronic energy + Delta-G solvation = -25230.923827 eV Core-core repulsion = 21740.677700 eV Total energy + Delta-G solvation = -3490.246127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44119 -40.24768 -37.25237 -36.43531 -35.83534 -34.80013 -32.84054 -31.13211 -30.45334 -29.61240 -26.73584 -26.30114 -25.55762 -23.92647 -23.10589 -22.22838 -21.86267 -20.30165 -19.48562 -18.41266 -17.40682 -16.97622 -16.66655 -16.50738 -16.40324 -15.96615 -15.77758 -15.62351 -15.25941 -15.00606 -14.90298 -14.76248 -14.28856 -14.11294 -13.63501 -13.44622 -13.33376 -13.20122 -12.97789 -12.90725 -12.74663 -12.53746 -12.51452 -12.36534 -12.20532 -12.15540 -11.76029 -11.65063 -11.48688 -11.33183 -11.14062 -10.59074 -10.25679 -9.65626 -9.42764 -9.26190 -8.23017 -6.33473 1.42138 1.44844 1.52637 1.83084 2.25917 2.42235 2.83240 2.91683 3.11584 3.43504 3.62824 3.82814 4.00747 4.19546 4.20562 4.31617 4.35332 4.41632 4.49809 4.50216 4.54301 4.58257 4.64516 4.69161 4.74538 4.78622 4.86350 4.88355 4.91835 4.99929 5.03768 5.05136 5.06414 5.28411 5.34895 5.54554 5.60801 5.63739 5.80547 5.91603 5.94815 6.09842 6.13577 6.14231 6.18733 6.79585 7.18855 7.35835 7.68547 8.88804 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002831 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.935493 B = 9888.866213 C =10188.931710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.069 0.931 4 N -0.715 5.715 5 C 0.701 3.299 6 O -0.640 6.640 7 N -0.736 5.736 8 C 0.163 3.837 9 C 0.025 3.975 10 C -0.548 4.548 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.965 3.035 15 H -0.280 1.280 16 H -0.268 1.268 17 H -0.268 1.268 18 C 0.090 3.910 19 H 0.068 0.932 20 C 0.062 3.938 21 N -0.551 5.551 22 C 0.024 3.976 23 C 0.056 3.944 24 C 0.059 3.941 25 N -0.548 5.548 26 C 0.028 3.972 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.404 0.596 31 H 0.404 0.596 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.049 0.951 47 H 0.075 0.925 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 -3.842 -26.241 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 H 0.087 0.913 4 N -0.372 5.372 5 C 0.400 3.600 6 O -0.523 6.523 7 N -0.390 5.390 8 C 0.039 3.961 9 C -0.012 4.012 10 C -0.586 4.586 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.790 3.210 15 H -0.205 1.205 16 H -0.193 1.193 17 H -0.193 1.193 18 C -0.020 4.020 19 H 0.086 0.914 20 C -0.067 4.067 21 N -0.275 5.275 22 C -0.124 4.124 23 C -0.072 4.072 24 C -0.069 4.069 25 N -0.273 5.273 26 C -0.120 4.120 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.241 0.759 31 H 0.238 0.762 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.139 -2.931 -26.105 26.593 hybrid contribution 0.490 -0.423 1.135 1.307 sum -3.649 -3.354 -24.970 25.457 Atomic orbital electron populations 1.22204 0.94154 1.03152 1.02333 1.20842 0.94251 0.96178 0.82480 0.91274 1.44931 1.70911 1.13811 1.07513 1.16129 0.78064 0.84678 0.81080 1.90844 1.59540 1.16349 1.85532 1.45215 1.70384 1.14255 1.09173 1.21022 0.98991 0.94532 0.81576 1.19107 0.95393 0.94434 0.92276 1.21444 1.44669 0.96957 0.95525 0.92300 1.25873 0.94644 0.95816 1.02812 1.70054 1.45153 1.10587 1.30848 0.85498 0.78906 0.78389 0.78255 1.20529 1.19339 1.19314 1.21890 0.87786 0.96344 0.95951 0.91392 1.22255 1.00492 0.92463 0.91479 1.62192 1.08340 1.17164 1.39819 1.22402 1.00968 0.87421 1.01566 1.22216 0.87222 0.96227 1.01546 1.22208 1.00132 0.93811 0.90761 1.62094 1.07337 1.16725 1.41139 1.22311 1.00753 0.88337 1.00569 0.94164 0.89849 0.90696 0.75949 0.76153 0.93962 0.94089 0.97502 0.97401 0.92542 0.94550 0.88641 0.95604 0.90640 0.90275 0.88754 0.94707 0.93891 0.89353 0.93182 0.90628 0.94635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.21 71.98 0.66 -2.50 16 2 C 0.17 3.78 1.89 44.99 0.09 3.86 16 3 H 0.07 1.90 5.92 -2.38 -0.01 1.88 16 4 N -0.72 -18.60 4.85 -457.82 -2.22 -20.82 16 5 C 0.70 25.16 8.53 179.06 1.53 26.69 16 6 O -0.64 -28.16 16.01 -4.00 -0.06 -28.22 16 7 N -0.74 -27.19 5.56 -478.53 -2.66 -29.85 16 8 C 0.16 7.35 5.61 86.38 0.48 7.84 16 9 C 0.03 1.32 5.09 29.85 0.15 1.47 16 10 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.01 0.41 5.46 84.65 0.46 0.88 16 13 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 14 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 C 0.09 1.58 1.81 44.92 0.08 1.66 16 19 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 20 C 0.06 0.95 4.36 86.31 0.38 1.33 16 21 N -0.55 -7.96 4.97 -921.97 -4.58 -12.54 16 22 C 0.02 0.27 9.63 127.69 1.23 1.50 16 23 C 0.06 0.78 5.62 86.31 0.48 1.27 16 24 C 0.06 0.88 5.61 86.31 0.48 1.36 16 25 N -0.55 -10.27 4.63 -896.54 -4.15 -14.41 16 26 C 0.03 0.56 8.96 127.69 1.14 1.70 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.22 6.37 -2.38 -0.02 1.21 16 30 H 0.40 9.00 6.82 -92.70 -0.63 8.37 16 31 H 0.40 12.97 8.49 -92.71 -0.79 12.19 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.04 0.62 6.42 -2.39 -0.02 0.60 16 38 H 0.10 1.29 6.44 -2.39 -0.02 1.28 16 39 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.07 0.76 8.07 -2.39 -0.02 0.74 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.09 1.18 8.06 -2.39 -0.02 1.17 16 46 H 0.05 1.26 6.66 -2.39 -0.02 1.24 16 47 H 0.07 1.33 8.01 -2.39 -0.02 1.31 16 48 H 0.04 0.62 8.11 -2.38 -0.02 0.60 16 Total: -1.00 -68.75 374.15 -4.43 -73.18 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.48 Total: 25.10 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 7.41 Total: 16.10 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -13.32 Total: -132.31 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.06 Total: -28.22 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.75 -4.43 -73.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346377142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.540 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds