Wall clock time and date at job start Tue Mar 31 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99445 * 2 1 4 4 O 1.21585 * 120.00227 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99524 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99675 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.46644 * 179.97438 * 6 5 3 8 8 C 1.50707 * 109.46961 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99816 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99670 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99353 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.50132 * 34.93670 * 11 10 8 13 13 C 1.53042 * 109.49747 * 155.00085 * 11 10 8 14 14 C 1.53040 * 109.54174 * 181.34974 * 13 11 10 15 15 C 1.53188 * 109.30921 * 298.63667 * 14 13 11 16 16 N 1.46926 * 108.77817 * 54.63345 * 15 14 13 17 17 C 1.36932 * 120.62923 * 126.37040 * 16 15 14 18 18 H 1.08003 * 120.00058 * 207.50814 * 17 16 15 19 19 C 1.38813 * 120.00216 * 27.51552 * 17 16 15 20 20 N 1.31614 * 120.00042 * 17.83429 * 19 17 16 21 21 Si 1.86803 * 119.99907 * 197.83738 * 19 17 16 22 22 H 1.48501 * 109.47098 * 265.35618 * 21 19 17 23 23 H 1.48493 * 109.47161 * 145.35673 * 21 19 17 24 24 H 1.48505 * 109.47060 * 25.35372 * 21 19 17 25 25 C 1.46930 * 118.73807 * 306.63893 * 16 15 14 26 26 H 1.08998 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47310 * 299.99750 * 1 2 3 28 28 H 1.08994 * 109.46934 * 60.00177 * 1 2 3 29 29 H 0.96994 * 119.99964 * 179.97438 * 2 1 3 30 30 H 0.96994 * 119.99886 * 359.97438 * 5 3 2 31 31 H 1.08999 * 109.46941 * 59.99890 * 6 5 3 32 32 H 1.08996 * 109.46906 * 299.99724 * 6 5 3 33 33 H 1.08999 * 109.47442 * 60.00318 * 7 6 5 34 34 H 1.09002 * 109.47709 * 299.99768 * 7 6 5 35 35 H 0.96990 * 120.00759 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.45919 * 61.32566 * 13 11 10 37 37 H 1.09004 * 109.46121 * 301.37171 * 13 11 10 38 38 H 1.09002 * 109.49979 * 178.68243 * 14 13 11 39 39 H 1.08998 * 109.49588 * 58.58319 * 14 13 11 40 40 H 1.09003 * 109.58681 * 294.84505 * 15 14 13 41 41 H 1.09001 * 109.70413 * 174.49134 * 15 14 13 42 42 H 0.97004 * 120.00090 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.58323 * 173.14513 * 25 16 15 44 44 H 1.08997 * 109.58717 * 293.57457 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 -0.0005 5 7 3.4867 1.1673 -0.0005 6 6 4.2191 2.4361 -0.0011 7 6 5.7233 2.1565 -0.0010 8 6 6.4768 3.4617 -0.0022 9 8 5.8703 4.5120 -0.0026 10 7 7.8245 3.4616 -0.0028 11 6 8.5570 4.7305 -0.0034 12 1 8.0097 5.4668 0.5851 13 6 9.9450 4.5193 0.6056 14 6 10.6985 5.8510 0.6363 15 6 10.8722 6.3678 -0.7952 16 7 9.5522 6.4360 -1.4368 17 6 9.1184 7.5973 -2.0184 18 1 8.0607 7.8056 -2.0850 19 6 10.0379 8.5069 -2.5225 20 7 11.2738 8.1262 -2.7670 21 14 9.5211 10.2712 -2.8537 22 1 9.1236 10.4115 -4.2776 23 1 10.6576 11.1823 -2.5650 24 1 8.3713 10.6222 -1.9819 25 6 8.7041 5.2362 -1.4374 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 3.9716 0.3273 -0.0005 31 1 3.9560 3.0078 0.8889 32 1 3.9554 3.0074 -0.8911 33 1 5.9867 1.5846 -0.8907 34 1 5.9867 1.5854 0.8893 35 1 8.3096 2.6217 -0.0029 36 1 10.5008 3.8013 0.0025 37 1 9.8416 4.1371 1.6212 38 1 11.6780 5.7044 1.0916 39 1 10.1310 6.5767 1.2188 40 1 11.5153 5.6877 -1.3538 41 1 11.3206 7.3611 -0.7754 42 1 11.9165 8.7619 -3.1189 43 1 7.7214 5.4836 -1.8388 44 1 9.1669 4.4619 -2.0493 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481534249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:51 Heat of formation + Delta-G solvation = -82.342446 kcal Electronic energy + Delta-G solvation = -24055.790946 eV Core-core repulsion = 20428.163659 eV Total energy + Delta-G solvation = -3627.627287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.20404 -40.76935 -39.02199 -36.41034 -35.88148 -35.57243 -34.15332 -32.34528 -32.13230 -30.10008 -27.52544 -27.25885 -24.92302 -23.88503 -23.20771 -22.07882 -21.39057 -20.88963 -19.64691 -18.73553 -18.07073 -17.24727 -17.11677 -16.99075 -16.60839 -16.31452 -15.78853 -15.45040 -15.40031 -15.23288 -15.00299 -14.62678 -14.50499 -14.14444 -14.03228 -13.81224 -13.40159 -13.04586 -13.02283 -12.88472 -12.74890 -12.58528 -12.41793 -12.13429 -11.97259 -11.75631 -11.56598 -11.52694 -11.29778 -10.84588 -10.62452 -10.45686 -10.08232 -9.79937 -8.70652 -7.92671 -5.36730 1.41962 1.43297 1.54718 1.61378 1.69875 2.11916 2.29966 2.50631 3.21334 3.38341 3.67753 3.72482 3.88728 4.07948 4.10347 4.15715 4.28275 4.47470 4.48623 4.53757 4.62604 4.66747 4.82842 4.88768 4.91633 4.93617 5.00545 5.03598 5.13665 5.19633 5.29191 5.40858 5.48585 5.49247 5.59467 5.62227 5.76701 6.01863 6.35216 6.66098 7.11522 7.13214 7.37948 7.58502 7.81975 8.30635 9.13031 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.022351 B = 0.002674 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.449244 B =10469.325659 C =11436.386938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.734 5.734 3 C 0.690 3.310 4 O -0.646 6.646 5 N -0.726 5.726 6 C 0.157 3.843 7 C -0.129 4.129 8 C 0.506 3.494 9 O -0.593 6.593 10 N -0.705 5.705 11 C 0.140 3.860 12 H 0.052 0.948 13 C -0.102 4.102 14 C -0.131 4.131 15 C 0.170 3.830 16 N -0.609 5.609 17 C -0.267 4.267 18 H 0.050 0.950 19 C -0.044 4.044 20 N -0.927 5.927 21 Si 0.963 3.037 22 H -0.284 1.284 23 H -0.283 1.283 24 H -0.278 1.278 25 C 0.144 3.856 26 H 0.117 0.883 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.418 0.582 30 H 0.419 0.581 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.420 0.580 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.007 0.993 41 H 0.053 0.947 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -25.437 9.135 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.391 5.391 3 C 0.389 3.611 4 O -0.528 6.528 5 N -0.383 5.383 6 C 0.032 3.968 7 C -0.169 4.169 8 C 0.293 3.707 9 O -0.473 6.473 10 N -0.357 5.357 11 C 0.033 3.967 12 H 0.070 0.930 13 C -0.140 4.140 14 C -0.171 4.171 15 C 0.045 3.955 16 N -0.333 5.333 17 C -0.398 4.398 18 H 0.068 0.932 19 C -0.240 4.240 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.211 1.211 23 H -0.209 1.209 24 H -0.203 1.203 25 C 0.017 3.983 26 H 0.136 0.864 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.255 0.745 30 H 0.257 0.743 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.258 0.742 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.685 -23.675 9.066 27.511 hybrid contribution 0.370 0.579 -0.641 0.940 sum -10.315 -23.096 8.425 26.661 Atomic orbital electron populations 1.21538 0.77522 1.04179 1.00988 1.44778 1.08185 1.06667 1.79461 1.16323 0.82426 0.84531 0.77803 1.90939 1.69147 1.32864 1.59841 1.44742 1.03918 1.10017 1.79661 1.20616 0.90311 0.84621 1.01289 1.21714 0.91999 0.94526 1.08681 1.21199 0.82757 0.91835 0.74881 1.90783 1.69090 1.36161 1.51271 1.45840 1.05869 1.09560 1.74449 1.21124 0.93196 0.85580 0.96794 0.92965 1.21599 0.93030 0.97803 1.01607 1.22024 1.00527 0.96827 0.97709 1.20734 0.85499 0.99357 0.89904 1.44228 1.16664 1.07870 1.64506 1.19363 0.91751 0.96516 1.32143 0.93220 1.25683 0.96598 1.02816 0.98898 1.70162 1.04763 1.34483 1.47906 0.85337 0.77293 0.80479 0.77810 1.21088 1.20863 1.20298 1.21150 0.93351 0.88782 0.95014 0.86442 0.93767 0.93917 0.74526 0.74316 0.93454 0.94036 0.84648 0.83943 0.74241 0.90268 0.89275 0.89643 0.93694 0.97500 0.92855 0.93817 0.95546 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 10.70 127.77 1.37 2.51 16 2 N -0.73 -8.94 5.72 -500.18 -2.86 -11.80 16 3 C 0.69 15.20 8.57 179.05 1.53 16.74 16 4 O -0.65 -22.48 16.34 -3.98 -0.07 -22.54 16 5 N -0.73 -11.08 5.56 -478.53 -2.66 -13.75 16 6 C 0.16 3.46 4.96 86.38 0.43 3.89 16 7 C -0.13 -1.78 5.81 29.85 0.17 -1.61 16 8 C 0.51 13.46 7.80 87.66 0.68 14.14 16 9 O -0.59 -23.74 15.64 -3.04 -0.05 -23.79 16 10 N -0.70 -16.76 5.08 -442.82 -2.25 -19.01 16 11 C 0.14 4.78 2.59 44.92 0.12 4.90 16 12 H 0.05 2.18 7.58 -2.38 -0.02 2.16 16 13 C -0.10 -2.87 5.36 30.62 0.16 -2.71 16 14 C -0.13 -4.65 6.08 30.67 0.19 -4.47 16 15 C 0.17 8.14 5.32 86.36 0.46 8.60 16 16 N -0.61 -32.11 3.00 -699.92 -2.10 -34.21 16 17 C -0.27 -15.85 9.58 84.03 0.81 -15.05 16 18 H 0.05 3.03 7.89 -2.91 -0.02 3.01 16 19 C -0.04 -2.57 4.90 84.86 0.42 -2.15 16 20 N -0.93 -55.63 11.20 21.65 0.24 -55.38 16 21 Si 0.96 47.17 29.59 68.60 2.03 49.20 16 22 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 25 C 0.14 6.37 6.06 86.22 0.52 6.90 16 26 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.42 1.44 8.84 -92.71 -0.82 0.62 16 30 H 0.42 2.16 8.49 -92.71 -0.79 1.38 16 31 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 32 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 5.92 8.60 -92.72 -0.80 5.12 16 36 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.05 2.92 6.03 -2.39 -0.01 2.90 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.03 1.30 7.93 -2.39 -0.02 1.28 16 44 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -90.51 360.63 -2.24 -92.74 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -1.38 Total: 6.86 kcal Atomic # 6 Polarization: 24.82 SS G_CDS: 6.86 Total: 31.68 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -9.63 Total: -134.15 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -0.11 Total: -46.33 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -90.51 -2.24 -92.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481534249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.402 kcal (2) G-P(sol) polarization free energy of solvation -90.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds