Wall clock time and date at job start Tue Mar 31 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00065 * 2 1 4 4 O 1.21583 * 119.99929 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00128 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00199 * 179.97438 * 5 3 2 7 7 C 1.52990 * 109.47308 * 179.97438 * 6 5 3 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.09002 * 112.85447 * 23.52517 * 11 10 8 13 13 C 1.53782 * 113.61542 * 154.72141 * 11 10 8 14 14 C 1.53779 * 87.08038 * 89.11161 * 13 11 10 15 15 H 1.09003 * 113.61747 * 270.88529 * 14 13 11 16 16 C 1.53002 * 113.61381 * 140.06585 * 14 13 11 17 17 N 1.46505 * 109.47052 * 175.00262 * 16 14 13 18 18 C 1.36935 * 119.99519 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00601 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99688 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00003 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 120.00129 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46647 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46880 * 120.00109 * 22 20 18 25 25 H 1.48500 * 109.46890 * 240.00274 * 22 20 18 26 26 C 1.53778 * 113.61220 * 252.21874 * 11 10 8 27 27 H 1.08995 * 109.47424 * 300.00018 * 1 2 3 28 28 H 1.08998 * 109.47023 * 60.00193 * 1 2 3 29 29 H 1.09004 * 109.46973 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99790 * 179.97438 * 2 1 3 31 31 H 0.97000 * 119.99732 * 359.97438 * 5 3 2 32 32 H 1.08998 * 109.47134 * 59.99329 * 6 5 3 33 33 H 1.09011 * 109.46711 * 299.99859 * 6 5 3 34 34 H 1.08998 * 109.47508 * 59.99635 * 7 6 5 35 35 H 1.09002 * 109.47337 * 299.99921 * 7 6 5 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 37 37 H 1.08999 * 113.61850 * 203.66149 * 13 11 10 38 38 H 1.09004 * 113.61464 * 334.48471 * 13 11 10 39 39 H 1.09007 * 109.47041 * 294.99985 * 16 14 13 40 40 H 1.09000 * 109.47287 * 55.00135 * 16 14 13 41 41 H 0.96993 * 120.00095 * 0.02562 * 17 16 14 42 42 H 0.97011 * 119.99874 * 180.02562 * 21 20 18 43 43 H 1.08998 * 113.61637 * 25.42993 * 26 11 10 44 44 H 1.08999 * 113.61924 * 156.33648 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7233 2.1564 -0.0010 8 6 6.4769 3.4615 -0.0022 9 8 5.8704 4.5118 -0.0035 10 7 7.8247 3.4615 -0.0028 11 6 8.5571 4.7302 0.0021 12 1 7.9714 5.5556 0.4068 13 6 9.9688 4.6242 0.6027 14 6 10.4607 4.2843 -0.8141 15 1 10.4362 3.2185 -1.0409 16 6 11.7974 4.9372 -1.1718 17 7 12.2373 4.4611 -2.4857 18 6 13.4156 4.9121 -3.0179 19 1 14.0204 5.6190 -2.4695 20 6 13.8327 4.4606 -4.2626 21 7 13.0953 3.5995 -4.9313 22 14 15.4398 5.0763 -4.9892 23 1 16.0756 6.0312 -4.0461 24 1 16.3516 3.9269 -5.2189 25 1 15.1699 5.7597 -6.2796 26 6 9.2371 5.0541 -1.3386 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9500 -0.8401 0.0004 31 1 3.9716 0.3271 -0.0005 32 1 3.9561 3.0077 0.8888 33 1 3.9555 3.0073 -0.8912 34 1 5.9867 1.5844 -0.8906 35 1 5.9867 1.5852 0.8893 36 1 8.3096 2.6214 -0.0021 37 1 10.3536 5.5703 0.9833 38 1 10.0807 3.8052 1.3133 39 1 11.6769 6.0203 -1.1995 40 1 12.5429 4.6737 -0.4216 41 1 11.6935 3.8271 -2.9788 42 1 13.3870 3.2837 -5.8009 43 1 8.7586 4.5814 -2.1963 44 1 9.4219 6.1178 -1.4888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755469884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:59 Heat of formation + Delta-G solvation = -39.371078 kcal Electronic energy + Delta-G solvation = -23082.600376 eV Core-core repulsion = 19456.836468 eV Total energy + Delta-G solvation = -3625.763909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46277 -40.06293 -38.46075 -35.64296 -34.80091 -34.55511 -33.21743 -31.32915 -30.67640 -27.27449 -26.62992 -25.51720 -24.18596 -23.11922 -21.44771 -21.32710 -20.77632 -19.12783 -18.96281 -17.41388 -17.01896 -16.41236 -16.38239 -15.92500 -15.52029 -14.91841 -14.73836 -14.57408 -14.30711 -14.24727 -13.90094 -13.48207 -13.37797 -13.16026 -12.75571 -12.62252 -12.41395 -12.22738 -12.09584 -11.83957 -11.62335 -11.04508 -10.85260 -10.59222 -10.49699 -10.34232 -10.08980 -10.00246 -9.83595 -9.66494 -9.61739 -9.20536 -9.04172 -8.85526 -6.90690 -5.76802 -3.04809 2.27814 2.46586 2.90767 3.06354 3.42955 3.48638 3.50874 3.91351 4.35682 4.57291 4.60988 4.68681 4.72001 4.79535 4.82427 5.06872 5.10331 5.13339 5.15556 5.40892 5.57614 5.58064 5.69185 5.72034 5.84917 5.92659 5.99665 6.04148 6.09116 6.10759 6.22729 6.29793 6.41314 6.50251 6.61485 6.77683 6.92827 7.37284 7.62893 7.70535 8.08208 8.27342 8.42534 9.53676 10.12798 10.47177 11.46262 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.002009 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.148066 B =13936.617570 C =14635.061159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.585 6.585 5 N -0.747 5.747 6 C 0.153 3.847 7 C -0.154 4.154 8 C 0.519 3.481 9 O -0.536 6.536 10 N -0.708 5.708 11 C 0.115 3.885 12 H 0.100 0.900 13 C -0.138 4.138 14 C -0.113 4.113 15 H 0.087 0.913 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.138 4.138 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.397 0.603 31 H 0.396 0.604 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.068 0.932 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.032 -10.803 13.871 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.408 5.408 3 C 0.401 3.599 4 O -0.463 6.463 5 N -0.404 5.404 6 C 0.029 3.971 7 C -0.195 4.195 8 C 0.305 3.695 9 O -0.413 6.413 10 N -0.359 5.359 11 C 0.009 3.991 12 H 0.118 0.882 13 C -0.176 4.176 14 C -0.132 4.132 15 H 0.105 0.895 16 C 0.034 3.966 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.177 4.177 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.230 0.770 31 H 0.229 0.771 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.237 0.763 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.216 0.784 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.905 -8.926 13.857 26.622 hybrid contribution 1.564 -1.260 -0.742 2.141 sum -19.341 -10.186 13.115 25.492 Atomic orbital electron populations 1.21396 0.78075 1.01948 1.02389 1.44918 1.07834 1.07085 1.81007 1.15936 0.81700 0.84326 0.77975 1.90967 1.67778 1.30304 1.57203 1.45081 1.04801 1.09780 1.80688 1.20878 0.87884 0.84174 1.04189 1.21807 0.95439 0.96932 1.05286 1.20263 0.82407 0.90858 0.75986 1.90755 1.67990 1.33457 1.49072 1.45673 1.05929 1.09438 1.74849 1.21959 0.92278 0.86487 0.98338 0.88234 1.23313 0.94351 1.02761 0.97216 1.22757 0.95720 1.00087 0.94597 0.89465 1.20646 0.91555 0.95724 0.88664 1.42351 1.24617 1.53677 1.16938 1.19300 0.97380 1.20362 0.99899 0.91162 1.24742 0.98979 0.99919 0.97506 1.69671 1.38639 1.35456 1.14552 0.86119 0.83289 0.77874 0.78939 1.20556 1.21908 1.21880 1.23408 0.96244 1.01497 0.96556 0.92365 0.92312 0.90663 0.77000 0.77100 0.90587 0.90474 0.87943 0.88152 0.76347 0.88724 0.91292 0.96193 0.96405 0.78363 0.93623 0.91315 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.59 10.70 59.85 0.64 1.23 16 2 N -0.75 -4.70 5.72 -72.07 -0.41 -5.11 16 3 C 0.70 7.14 8.57 -86.92 -0.74 6.40 16 4 O -0.59 -8.95 16.34 5.29 0.09 -8.87 16 5 N -0.75 -5.50 5.56 -65.23 -0.36 -5.86 16 6 C 0.15 1.44 4.96 -4.05 -0.02 1.42 16 7 C -0.15 -1.04 5.81 -27.89 -0.16 -1.20 16 8 C 0.52 5.72 7.83 -10.98 -0.09 5.64 16 9 O -0.54 -8.30 15.58 5.55 0.09 -8.21 16 10 N -0.71 -7.16 5.26 -53.02 -0.28 -7.44 16 11 C 0.11 1.39 4.33 -67.12 -0.29 1.10 16 12 H 0.10 1.31 7.46 -51.93 -0.39 0.92 16 13 C -0.14 -1.59 7.39 -25.92 -0.19 -1.78 16 14 C -0.11 -1.68 3.63 -89.81 -0.33 -2.01 16 15 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 16 C 0.16 3.16 6.10 -4.04 -0.02 3.14 16 17 N -0.73 -18.43 5.60 -59.90 -0.34 -18.77 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 22 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C -0.14 -2.01 7.43 -25.92 -0.19 -2.20 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.40 1.10 8.84 -40.82 -0.36 0.74 16 31 H 0.40 1.44 8.49 -40.82 -0.35 1.09 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.08 0.92 8.10 -51.92 -0.42 0.50 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.40 3.09 8.70 -40.82 -0.36 2.74 16 37 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.40 7.85 -51.92 -0.41 -0.01 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 10.11 7.67 -40.82 -0.31 9.80 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.37 7.90 -51.93 -0.41 0.96 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -37.82 370.87 -8.76 -46.59 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.19 Total: 7.87 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.64 Total: 4.32 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -0.66 Total: -64.73 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.17 Total: -17.08 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.82 -8.76 -46.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755469884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.216 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds