Wall clock time and date at job start Tue Mar 31 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00065 * 2 1 4 4 O 1.21583 * 119.99929 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00128 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00199 * 179.97438 * 5 3 2 7 7 C 1.52990 * 109.47308 * 179.97438 * 6 5 3 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.09002 * 112.85447 * 23.52517 * 11 10 8 13 13 C 1.53782 * 113.61542 * 154.72141 * 11 10 8 14 14 C 1.53779 * 87.08038 * 89.11161 * 13 11 10 15 15 H 1.09003 * 113.61747 * 270.88529 * 14 13 11 16 16 C 1.53002 * 113.61381 * 140.06585 * 14 13 11 17 17 N 1.46505 * 109.47052 * 175.00262 * 16 14 13 18 18 C 1.36935 * 119.99519 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00601 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99688 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00003 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 120.00129 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46647 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46880 * 120.00109 * 22 20 18 25 25 H 1.48500 * 109.46890 * 240.00274 * 22 20 18 26 26 C 1.53778 * 113.61220 * 252.21874 * 11 10 8 27 27 H 1.08995 * 109.47424 * 300.00018 * 1 2 3 28 28 H 1.08998 * 109.47023 * 60.00193 * 1 2 3 29 29 H 1.09004 * 109.46973 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99790 * 179.97438 * 2 1 3 31 31 H 0.97000 * 119.99732 * 359.97438 * 5 3 2 32 32 H 1.08998 * 109.47134 * 59.99329 * 6 5 3 33 33 H 1.09011 * 109.46711 * 299.99859 * 6 5 3 34 34 H 1.08998 * 109.47508 * 59.99635 * 7 6 5 35 35 H 1.09002 * 109.47337 * 299.99921 * 7 6 5 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 37 37 H 1.08999 * 113.61850 * 203.66149 * 13 11 10 38 38 H 1.09004 * 113.61464 * 334.48471 * 13 11 10 39 39 H 1.09007 * 109.47041 * 294.99985 * 16 14 13 40 40 H 1.09000 * 109.47287 * 55.00135 * 16 14 13 41 41 H 0.96993 * 120.00095 * 0.02562 * 17 16 14 42 42 H 0.97011 * 119.99874 * 180.02562 * 21 20 18 43 43 H 1.08998 * 113.61637 * 25.42993 * 26 11 10 44 44 H 1.08999 * 113.61924 * 156.33648 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7233 2.1564 -0.0010 8 6 6.4769 3.4615 -0.0022 9 8 5.8704 4.5118 -0.0035 10 7 7.8247 3.4615 -0.0028 11 6 8.5571 4.7302 0.0021 12 1 7.9714 5.5556 0.4068 13 6 9.9688 4.6242 0.6027 14 6 10.4607 4.2843 -0.8141 15 1 10.4362 3.2185 -1.0409 16 6 11.7974 4.9372 -1.1718 17 7 12.2373 4.4611 -2.4857 18 6 13.4156 4.9121 -3.0179 19 1 14.0204 5.6190 -2.4695 20 6 13.8327 4.4606 -4.2626 21 7 13.0953 3.5995 -4.9313 22 14 15.4398 5.0763 -4.9892 23 1 16.0756 6.0312 -4.0461 24 1 16.3516 3.9269 -5.2189 25 1 15.1699 5.7597 -6.2796 26 6 9.2371 5.0541 -1.3386 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9500 -0.8401 0.0004 31 1 3.9716 0.3271 -0.0005 32 1 3.9561 3.0077 0.8888 33 1 3.9555 3.0073 -0.8912 34 1 5.9867 1.5844 -0.8906 35 1 5.9867 1.5852 0.8893 36 1 8.3096 2.6214 -0.0021 37 1 10.3536 5.5703 0.9833 38 1 10.0807 3.8052 1.3133 39 1 11.6769 6.0203 -1.1995 40 1 12.5429 4.6737 -0.4216 41 1 11.6935 3.8271 -2.9788 42 1 13.3870 3.2837 -5.8009 43 1 8.7586 4.5814 -2.1963 44 1 9.4219 6.1178 -1.4888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755469884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:57 Heat of formation + Delta-G solvation = -71.227013 kcal Electronic energy + Delta-G solvation = -23083.981753 eV Core-core repulsion = 19456.836468 eV Total energy + Delta-G solvation = -3627.145286 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.36767 -40.91188 -39.53450 -36.44953 -36.23778 -35.56564 -34.43709 -32.86220 -31.77507 -28.57779 -27.52098 -26.60572 -25.45828 -24.47313 -22.87176 -22.07723 -21.61753 -20.28845 -19.67857 -19.05888 -18.18392 -17.15362 -17.12590 -16.94261 -16.65668 -16.30453 -15.78507 -15.72354 -15.36298 -15.24204 -15.06846 -14.89845 -14.49193 -14.37474 -13.85022 -13.67419 -13.36400 -13.11436 -13.02257 -12.91821 -12.87681 -12.71454 -12.44491 -12.12293 -11.92729 -11.72303 -11.52749 -11.33680 -11.13522 -10.95293 -10.84833 -10.45257 -10.01691 -9.79779 -8.97046 -7.95204 -5.23002 1.47306 1.48057 1.58125 1.60012 1.62504 2.11907 2.28356 2.56217 3.37746 3.38139 3.61873 3.62497 3.67256 3.95203 3.96113 4.01828 4.11668 4.35011 4.47328 4.51876 4.60887 4.66838 4.79438 4.86817 4.87191 4.90533 4.94556 4.95203 5.00010 5.01347 5.17557 5.29710 5.39435 5.40850 5.49381 5.50430 5.70996 6.00785 6.28141 6.57111 7.11743 7.26790 7.34184 7.57761 8.12408 8.34750 9.28538 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.002009 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.148066 B =13936.617570 C =14635.061159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.735 5.735 3 C 0.691 3.309 4 O -0.645 6.645 5 N -0.728 5.728 6 C 0.158 3.842 7 C -0.136 4.136 8 C 0.514 3.486 9 O -0.588 6.588 10 N -0.698 5.698 11 C 0.125 3.875 12 H 0.090 0.910 13 C -0.116 4.116 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.158 3.842 17 N -0.745 5.745 18 C -0.245 4.245 19 H 0.074 0.926 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.295 1.295 26 C -0.145 4.145 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.115 0.885 30 H 0.417 0.583 31 H 0.418 0.582 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.418 0.582 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.017 0.983 40 H 0.023 0.977 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.052 0.948 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.332 -12.785 15.265 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.392 5.392 3 C 0.390 3.610 4 O -0.526 6.526 5 N -0.386 5.386 6 C 0.033 3.967 7 C -0.176 4.176 8 C 0.302 3.698 9 O -0.468 6.468 10 N -0.349 5.349 11 C 0.019 3.981 12 H 0.108 0.892 13 C -0.154 4.154 14 C -0.128 4.128 15 H 0.108 0.892 16 C 0.032 3.968 17 N -0.387 5.387 18 C -0.377 4.377 19 H 0.092 0.908 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.802 3.198 23 H -0.191 1.191 24 H -0.219 1.219 25 H -0.222 1.222 26 C -0.184 4.184 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.254 0.746 31 H 0.255 0.745 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.255 0.745 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.161 -10.993 15.297 27.592 hybrid contribution 1.305 -0.635 -1.149 1.851 sum -18.856 -11.629 14.148 26.285 Atomic orbital electron populations 1.21531 0.77519 1.04133 1.01024 1.44802 1.08214 1.06754 1.79433 1.16298 0.82397 0.84514 0.77784 1.90928 1.69110 1.32725 1.59870 1.44784 1.03965 1.10138 1.79683 1.20629 0.89979 0.84595 1.01508 1.21739 0.92409 0.94978 1.08462 1.21003 0.82520 0.91685 0.74583 1.90745 1.68967 1.35696 1.51398 1.45585 1.05804 1.09429 1.74112 1.21732 0.92666 0.87316 0.96420 0.89184 1.23212 0.92652 1.04082 0.95472 1.22681 0.93016 0.99742 0.97326 0.89159 1.20848 0.93986 0.95765 0.86222 1.42576 1.23862 1.53509 1.18747 1.19707 0.98223 1.19745 1.00038 0.90760 1.25559 1.02444 1.00709 0.98215 1.69818 1.40413 1.37024 1.14778 0.85084 0.79431 0.77386 0.77931 1.19079 1.21865 1.22220 1.23420 0.96776 1.00751 0.97428 0.93666 0.93866 0.86621 0.74605 0.74451 0.93057 0.93752 0.85159 0.84207 0.74490 0.87989 0.88630 0.96494 0.95955 0.79485 0.94052 0.92948 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.01 10.70 127.77 1.37 2.38 16 2 N -0.74 -8.01 5.72 -500.20 -2.86 -10.87 16 3 C 0.69 13.81 8.57 179.05 1.53 15.35 16 4 O -0.64 -20.62 16.34 -3.98 -0.06 -20.69 16 5 N -0.73 -9.66 5.56 -478.55 -2.66 -12.32 16 6 C 0.16 2.93 4.96 86.38 0.43 3.36 16 7 C -0.14 -1.48 5.81 29.85 0.17 -1.31 16 8 C 0.51 10.69 7.83 87.66 0.69 11.37 16 9 O -0.59 -18.54 15.58 -3.04 -0.05 -18.59 16 10 N -0.70 -12.61 5.26 -440.04 -2.32 -14.92 16 11 C 0.12 2.85 4.33 45.52 0.20 3.04 16 12 H 0.09 2.31 7.46 -2.39 -0.02 2.29 16 13 C -0.12 -2.35 7.39 31.12 0.23 -2.12 16 14 C -0.11 -3.09 3.63 -10.27 -0.04 -3.13 16 15 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 16 C 0.16 6.06 6.10 86.38 0.53 6.58 16 17 N -0.74 -37.51 5.60 -343.43 -1.92 -39.44 16 18 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 21 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 22 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 26 C -0.14 -4.18 7.43 31.12 0.23 -3.95 16 27 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.42 1.11 8.84 -92.71 -0.82 0.29 16 31 H 0.42 1.70 8.49 -92.71 -0.79 0.91 16 32 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 33 H 0.04 1.12 8.10 -2.38 -0.02 1.10 16 34 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.42 5.00 8.70 -92.71 -0.81 4.19 16 37 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.02 0.67 7.85 -2.38 -0.02 0.65 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.37 19.94 7.67 -92.71 -0.71 19.23 16 42 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.46 7.90 -2.39 -0.02 2.44 16 Total: -1.00 -86.11 370.87 -3.00 -89.11 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -2.09 Total: 23.78 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.64 Total: 14.69 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -9.48 Total: -136.50 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.11 Total: -39.28 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -86.11 -3.00 -89.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755469884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.886 kcal (2) G-P(sol) polarization free energy of solvation -86.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds