Wall clock time and date at job start Tue Mar 31 2020 03:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35999 * 116.99921 * 2 1 4 4 C 1.38536 * 119.95088 * 0.02562 * 3 2 1 5 5 C 1.38509 * 120.10576 * 179.66849 * 4 3 2 6 6 C 1.37536 * 119.64372 * 0.18631 * 5 4 3 7 7 C 1.38869 * 120.57029 * 0.55106 * 6 5 4 8 8 C 1.37726 * 120.13689 * 358.82263 * 7 6 5 9 9 O 1.36038 * 121.24844 * 181.46596 * 8 7 6 10 10 C 1.43083 * 116.71665 * 18.90622 * 9 8 7 11 11 C 1.53254 * 108.51860 * 308.12867 * 10 9 8 12 12 C 1.50785 * 116.83740 * 178.78882 * 7 6 5 13 13 C 1.47201 * 109.85549 * 73.12751 * 12 7 6 14 14 N 6.48861 * 139.85223 * 33.46498 * 2 1 3 15 15 C 1.52395 * 109.72696 * 312.61444 * 12 7 6 16 16 H 1.09010 * 108.41527 * 285.57408 * 15 12 7 17 17 C 1.50696 * 108.53728 * 167.93473 * 15 12 7 18 18 H 1.07995 * 120.00332 * 355.34449 * 17 15 12 19 19 C 1.37880 * 119.99983 * 175.35284 * 17 15 12 20 20 N 1.31517 * 120.00210 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00019 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46845 * 269.99914 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99403 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00010 * 21 19 17 25 25 C 1.51435 * 114.20960 * 46.70721 * 15 12 7 26 26 C 1.50634 * 122.39314 * 180.38325 * 6 5 4 27 27 H 1.09000 * 109.47089 * 59.99905 * 1 2 3 28 28 H 1.09002 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47246 * 300.00222 * 1 2 3 30 30 H 1.07991 * 119.94334 * 359.64100 * 4 3 2 31 31 H 1.07996 * 120.17752 * 180.16735 * 5 4 3 32 32 H 1.09003 * 109.62774 * 67.84208 * 10 9 8 33 33 H 1.09004 * 109.62439 * 188.42054 * 10 9 8 34 34 H 1.09007 * 109.57899 * 184.88439 * 11 10 9 35 35 H 1.08995 * 109.58146 * 305.14796 * 11 10 9 36 36 H 0.97000 * 119.99462 * 359.97438 * 20 19 17 37 37 H 1.08991 * 108.61156 * 120.81298 * 25 15 12 38 38 H 1.09001 * 108.61027 * 238.70862 * 25 15 12 39 39 H 1.09005 * 109.44290 * 109.08559 * 26 6 5 40 40 H 1.08999 * 109.44372 * 349.19774 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3730 0.0005 5 6 1.9163 3.6088 0.0075 6 6 3.2900 3.6760 0.0099 7 6 4.0538 2.5163 -0.0060 8 6 3.4397 1.2836 0.0000 9 8 4.1659 0.1334 0.0145 10 6 5.5289 0.2385 0.4371 11 6 6.2070 1.3455 -0.3774 12 6 5.5517 2.6881 -0.0303 13 6 6.0245 3.1406 1.2882 14 7 6.3887 3.4901 2.3070 15 6 5.9346 3.7146 -1.0896 16 1 5.8254 3.2535 -2.0714 17 6 7.3819 4.0867 -0.8952 18 1 7.9330 3.6911 -0.0549 19 6 8.0024 4.9325 -1.7899 20 7 7.3315 5.4141 -2.8134 21 14 9.7963 5.3944 -1.5485 22 1 9.8840 6.6183 -0.7121 23 1 10.5075 4.2803 -0.8715 24 1 10.4234 5.6517 -2.8697 25 6 5.1035 4.9801 -1.0571 26 6 4.0339 4.9857 0.0259 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2125 2.3145 -0.0049 31 1 1.3284 4.5147 0.0106 32 1 5.5652 0.4892 1.4973 33 1 6.0398 -0.7087 0.2642 34 1 7.2683 1.3823 -0.1311 35 1 6.0859 1.1426 -1.4414 36 1 6.4001 5.1740 -2.9390 37 1 5.7680 5.8285 -0.8942 38 1 4.6166 5.1015 -2.0248 39 1 4.5041 5.1241 0.9995 40 1 3.3353 5.8020 -0.1582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001721257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:12 Heat of formation + Delta-G solvation = -45.525612 kcal Electronic energy + Delta-G solvation = -25138.001406 eV Core-core repulsion = 21689.268123 eV Total energy + Delta-G solvation = -3448.733283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.56623 -40.20001 -39.22972 -37.77928 -36.61985 -34.62060 -33.69749 -31.90547 -30.67046 -29.06926 -27.76010 -26.49373 -25.46436 -24.82294 -23.10716 -22.07940 -20.74242 -19.65105 -18.92785 -18.53013 -17.77107 -17.01668 -16.81991 -16.29400 -16.10569 -15.97348 -15.75218 -15.53766 -15.23166 -14.82816 -14.39171 -14.03631 -13.97494 -13.85268 -13.60661 -13.55008 -13.26178 -13.09528 -12.85792 -12.80364 -12.60464 -12.34393 -12.20180 -12.01451 -11.96957 -11.71327 -11.66159 -11.47238 -11.07120 -10.56314 -10.34753 -9.60092 -8.79113 -8.53809 -6.28856 0.15983 0.39297 1.52870 1.57684 1.73531 1.75678 1.81435 2.29102 2.35125 2.53382 2.59941 3.08932 3.22896 3.57342 3.60860 3.73512 3.79374 3.95159 4.09882 4.17305 4.18925 4.26549 4.39886 4.48053 4.48441 4.49034 4.63310 4.68776 4.71993 4.80463 4.87665 4.90189 5.04533 5.07184 5.17613 5.31602 5.39980 5.55127 5.66826 5.70864 6.01630 6.07264 6.22839 6.56822 6.61314 6.68547 7.47031 8.84843 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.005385 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.640047 B = 5198.485415 C = 5662.310198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.086 3.914 4 C -0.162 4.162 5 C -0.103 4.103 6 C -0.084 4.084 7 C -0.138 4.138 8 C 0.097 3.903 9 O -0.310 6.310 10 C 0.060 3.940 11 C -0.137 4.137 12 C 0.102 3.898 13 C 0.265 3.735 14 N -0.488 5.488 15 C 0.053 3.947 16 H 0.020 0.980 17 C -0.600 4.600 18 H 0.041 0.959 19 C -0.015 4.015 20 N -0.931 5.931 21 Si 1.099 2.901 22 H -0.285 1.285 23 H -0.276 1.276 24 H -0.280 1.280 25 C -0.097 4.097 26 C -0.072 4.072 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.173 0.827 31 H 0.159 0.841 32 H 0.054 0.946 33 H 0.148 0.852 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.268 0.732 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.347 -9.198 3.673 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.040 3.960 4 C -0.180 4.180 5 C -0.121 4.121 6 C -0.085 4.085 7 C -0.140 4.140 8 C 0.051 3.949 9 O -0.225 6.225 10 C -0.014 4.014 11 C -0.175 4.175 12 C 0.099 3.901 13 C -0.051 4.051 14 N -0.164 5.164 15 C 0.033 3.967 16 H 0.038 0.962 17 C -0.638 4.638 18 H 0.059 0.941 19 C -0.216 4.216 20 N -0.568 5.568 21 Si 0.924 3.076 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.206 1.206 25 C -0.135 4.135 26 C -0.109 4.109 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.190 0.810 31 H 0.177 0.823 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.520 -8.179 4.523 15.624 hybrid contribution -0.901 -0.343 0.143 0.974 sum -13.420 -8.523 4.666 16.569 Atomic orbital electron populations 1.23392 0.76340 1.05608 1.02474 1.86130 1.23398 1.25592 1.89075 1.18506 0.88670 0.86319 1.02456 1.21430 1.01366 0.90186 1.05005 1.20861 0.92267 0.98772 1.00229 1.19743 0.94435 0.93962 1.00353 1.19282 0.93904 0.92754 1.08021 1.17884 0.89026 0.85195 1.02760 1.86214 1.24602 1.28581 1.83061 1.23227 0.79397 1.01581 0.97227 1.22321 1.01435 0.91259 1.02508 1.16904 0.90235 0.97755 0.85243 1.28909 0.91268 0.91563 0.93353 1.81039 1.10845 1.10426 1.14134 1.18410 0.95202 0.90850 0.92210 0.96220 1.22232 0.96195 1.32456 1.12921 0.94085 1.26697 1.08443 0.93741 0.92682 1.70852 1.12163 1.44052 1.29748 0.83124 0.71768 0.76530 0.76206 1.21113 1.20114 1.20577 1.21190 0.95864 0.99348 0.97102 1.20344 0.97207 0.94949 0.98416 0.91382 0.86461 0.91388 0.81017 0.82328 0.92781 0.83484 0.88957 0.88824 0.92058 0.93978 0.93885 0.93187 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -8.55 10.25 -78.95 -0.81 -9.36 16 3 C 0.09 2.49 6.71 22.65 0.15 2.65 16 4 C -0.16 -3.76 9.04 22.41 0.20 -3.56 16 5 C -0.10 -2.67 9.78 22.17 0.22 -2.46 16 6 C -0.08 -2.85 5.45 -19.90 -0.11 -2.96 16 7 C -0.14 -5.03 4.69 -19.81 -0.09 -5.13 16 8 C 0.10 3.31 6.47 22.46 0.15 3.46 16 9 O -0.31 -10.30 10.13 -79.40 -0.80 -11.11 16 10 C 0.06 1.76 6.91 72.07 0.50 2.26 16 11 C -0.14 -4.76 4.60 30.81 0.14 -4.62 16 12 C 0.10 4.10 0.28 -54.78 -0.02 4.09 16 13 C 0.27 11.51 9.52 89.43 0.85 12.36 16 14 N -0.49 -22.31 18.54 20.02 0.37 -21.93 16 15 C 0.05 2.45 1.26 -12.25 -0.02 2.44 16 16 H 0.02 0.98 7.53 -2.38 -0.02 0.97 16 17 C -0.60 -31.30 7.18 25.60 0.18 -31.11 16 18 H 0.04 2.20 6.68 -2.91 -0.02 2.18 16 19 C -0.02 -0.81 4.95 84.65 0.42 -0.39 16 20 N -0.93 -53.03 13.15 21.45 0.28 -52.75 16 21 Si 1.10 49.62 29.90 68.60 2.05 51.67 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 C -0.10 -4.29 4.08 29.82 0.12 -4.16 16 26 C -0.07 -2.63 5.44 29.57 0.16 -2.47 16 27 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 28 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 30 H 0.17 2.55 6.27 -2.91 -0.02 2.53 16 31 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.05 1.62 7.63 -2.39 -0.02 1.60 16 33 H 0.15 3.16 8.14 -2.38 -0.02 3.14 16 34 H 0.09 3.24 7.91 -2.38 -0.02 3.22 16 35 H 0.09 3.26 7.79 -2.39 -0.02 3.24 16 36 H 0.27 15.10 5.61 -92.71 -0.52 14.58 16 37 H 0.04 2.12 6.73 -2.39 -0.02 2.10 16 38 H 0.04 1.87 7.55 -2.39 -0.02 1.86 16 39 H 0.05 1.99 7.01 -2.38 -0.02 1.98 16 40 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 Total: -1.00 -66.95 317.89 6.39 -60.56 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.32 Total: 11.20 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.97 Total: -28.28 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: 0.65 Total: -74.68 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -1.61 Total: -20.47 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Total: -66.95 6.39 -60.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001721257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.036 kcal (2) G-P(sol) polarization free energy of solvation -66.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds