Wall clock time and date at job start Tue Mar 31 2020 03:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47601 * 2 1 4 4 N 1.46508 * 109.47150 * 119.99947 * 2 1 3 5 5 S 1.65595 * 120.00182 * 245.22336 * 4 2 1 6 6 O 1.42101 * 106.40315 * 47.53987 * 5 4 2 7 7 O 1.42098 * 106.40347 * 180.46239 * 5 4 2 8 8 N 1.65608 * 107.21637 * 294.00225 * 5 4 2 9 9 C 1.46490 * 120.00264 * 90.78354 * 8 5 4 10 10 C 1.46502 * 119.99425 * 270.78527 * 8 5 4 11 11 C 1.50697 * 109.47295 * 95.74697 * 10 8 5 12 12 H 1.07998 * 120.00072 * 5.06439 * 11 10 8 13 13 C 1.37876 * 120.00019 * 185.06547 * 11 10 8 14 14 N 1.31517 * 120.00021 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00105 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47247 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47438 * 119.99925 * 15 13 11 18 18 H 1.48501 * 109.47435 * 240.00381 * 15 13 11 19 19 C 1.50698 * 109.47215 * 239.99714 * 2 1 3 20 20 C 1.38234 * 119.61656 * 85.00333 * 19 2 1 21 21 C 1.38625 * 119.15713 * 179.97438 * 20 19 2 22 22 C 1.38672 * 118.42433 * 0.02562 * 21 20 19 23 23 C 1.38176 * 119.16215 * 0.27231 * 22 21 20 24 24 N 1.31852 * 119.62266 * 264.98288 * 19 2 1 25 25 H 1.09001 * 109.46948 * 55.25112 * 1 2 3 26 26 H 1.09003 * 109.47516 * 175.25921 * 1 2 3 27 27 H 1.09005 * 109.46846 * 295.25614 * 1 2 3 28 28 H 0.97000 * 119.99939 * 65.21885 * 4 2 1 29 29 H 1.09004 * 109.47372 * 89.99921 * 9 8 5 30 30 H 1.08996 * 109.47367 * 209.99902 * 9 8 5 31 31 H 1.09004 * 109.46954 * 329.99954 * 9 8 5 32 32 H 1.09004 * 109.46703 * 215.74516 * 10 8 5 33 33 H 1.09002 * 109.47264 * 335.74033 * 10 8 5 34 34 H 0.97004 * 119.99863 * 180.02562 * 14 13 11 35 35 H 1.07993 * 120.41676 * 359.97438 * 20 19 2 36 36 H 1.08003 * 120.78646 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.41572 * 180.02562 * 22 21 20 38 38 H 1.08006 * 119.61675 * 179.70220 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.8609 0.1468 2.3498 6 8 2.1204 1.3322 2.6062 7 8 3.1987 -0.7926 3.3611 8 7 4.2888 0.6271 1.6619 9 6 4.3777 1.9255 0.9894 10 6 5.4630 -0.2467 1.7259 11 6 5.5577 -1.0546 0.4573 12 1 4.8663 -0.8720 -0.3521 13 6 6.5269 -2.0269 0.3299 14 7 7.3685 -2.2496 1.3158 15 14 6.6439 -3.0288 -1.2422 16 1 5.5886 -2.5883 -2.1897 17 1 7.9794 -2.8274 -1.8595 18 1 6.4561 -4.4679 -0.9273 19 6 2.0323 -0.7105 -1.2304 20 6 2.1613 -0.0132 -2.4170 21 6 2.6249 -0.6760 -3.5429 22 6 2.9422 -2.0215 -3.4329 23 6 2.7816 -2.6537 -2.2148 24 7 2.3441 -1.9898 -1.1626 25 1 -0.3633 0.5858 -0.8444 26 1 -0.3634 -1.0241 -0.0849 27 1 -0.3633 0.4385 0.9295 28 1 1.8480 -1.6385 1.3125 29 1 4.6787 2.6873 1.7085 30 1 5.1151 1.8702 0.1887 31 1 3.4053 2.1850 0.5706 32 1 6.3616 0.3600 1.8382 33 1 5.3696 -0.9190 2.5788 34 1 8.0506 -2.9334 1.2260 35 1 1.9043 1.0345 -2.4663 36 1 2.7354 -0.1570 -4.4835 37 1 3.3064 -2.5691 -4.2895 38 1 3.0219 -3.7026 -2.1221 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044648998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:08 Heat of formation + Delta-G solvation = -64.157132 kcal Electronic energy + Delta-G solvation = -23705.776614 eV Core-core repulsion = 20288.139016 eV Total energy + Delta-G solvation = -3417.637598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09741 -38.33184 -37.27410 -37.00530 -36.87570 -34.45367 -33.18902 -32.20758 -30.03724 -29.63149 -26.76185 -25.18998 -24.34204 -24.14862 -22.24385 -20.41088 -18.93505 -18.48976 -18.30404 -17.97767 -17.29748 -16.93196 -16.53690 -16.23045 -15.53675 -15.21483 -15.05221 -14.91729 -14.70243 -14.20194 -13.97578 -13.93799 -13.82734 -13.42020 -13.23034 -13.16772 -13.00076 -12.90298 -12.77526 -12.60670 -12.49302 -12.40096 -12.10832 -11.85363 -11.65707 -10.69964 -10.66212 -10.56167 -10.12788 -9.83546 -9.67904 -8.14511 -6.25920 -0.24516 0.27951 0.52842 1.38551 1.39995 1.52825 2.00584 2.44011 2.64733 2.97401 3.18057 3.34838 3.47396 3.76758 3.97779 4.10172 4.19410 4.27698 4.32974 4.38634 4.52589 4.69881 4.74878 4.83315 4.87857 4.96885 5.06612 5.12834 5.26686 5.27882 5.35749 5.38878 5.50651 5.76447 5.89054 5.90637 6.13171 6.21604 6.86218 7.23359 7.43491 8.93833 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.009918 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.689567 B = 2822.459078 C = 4502.496078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.201 3.799 3 H 0.108 0.892 4 N -1.102 6.102 5 S 2.802 3.198 6 O -1.001 7.001 7 O -1.022 7.022 8 N -1.002 6.002 9 C 0.096 3.904 10 C 0.259 3.741 11 C -0.518 4.518 12 H 0.072 0.928 13 C 0.006 3.994 14 N -0.934 5.934 15 Si 0.950 3.050 16 H -0.241 1.241 17 H -0.288 1.288 18 H -0.289 1.289 19 C 0.107 3.893 20 C -0.169 4.169 21 C -0.074 4.074 22 C -0.181 4.181 23 C 0.081 3.919 24 N -0.489 5.489 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.421 0.579 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.018 0.982 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.151 0.849 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.719 5.857 -12.139 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.093 3.907 3 H 0.125 0.875 4 N -0.862 5.862 5 S 2.810 3.190 6 O -0.984 6.984 7 O -1.006 7.006 8 N -0.844 5.844 9 C -0.050 4.050 10 C 0.135 3.865 11 C -0.558 4.558 12 H 0.090 0.910 13 C -0.192 4.192 14 N -0.575 5.575 15 Si 0.775 3.225 16 H -0.164 1.164 17 H -0.215 1.215 18 H -0.215 1.215 19 C -0.033 4.033 20 C -0.189 4.189 21 C -0.100 4.100 22 C -0.201 4.201 23 C -0.076 4.076 24 N -0.198 5.198 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.256 0.744 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.182 0.818 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.915 5.721 -10.407 17.545 hybrid contribution 1.032 -1.136 -1.373 2.059 sum -11.883 4.586 -11.780 17.350 Atomic orbital electron populations 1.22138 0.91537 1.03255 1.04002 1.19811 0.96270 0.94431 0.80218 0.87470 1.55636 1.71546 1.23182 1.35817 1.01088 0.72397 0.72371 0.73185 1.93535 1.71499 1.48642 1.84719 1.93528 1.84319 1.64778 1.58015 1.57513 1.26735 1.27093 1.73056 1.21524 1.03126 0.82620 0.97688 1.18751 0.82809 0.88233 0.96702 1.21762 1.14942 1.17650 1.01417 0.91032 1.25801 0.95529 0.98303 0.99600 1.70093 1.19538 1.34149 1.33687 0.85621 0.78220 0.78182 0.80441 1.16391 1.21484 1.21501 1.21602 0.95716 0.90675 0.95312 1.22185 1.01296 1.02548 0.92832 1.21900 0.94354 0.93989 0.99770 1.22386 1.01495 0.96796 0.99411 1.22873 0.95314 1.00495 0.88936 1.67212 1.10957 1.09751 1.31913 0.88703 0.92177 0.91095 0.74415 0.92430 0.90849 0.90141 0.96398 0.96607 0.92978 0.81840 0.81664 0.83081 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.50 71.98 0.68 -2.42 16 2 C 0.20 5.40 3.14 44.24 0.14 5.54 16 3 H 0.11 2.58 6.15 -2.39 -0.01 2.56 16 4 N -1.10 -37.35 5.17 -172.52 -0.89 -38.24 16 5 S 2.80 113.06 5.98 -56.49 -0.34 112.72 16 6 O -1.00 -39.20 16.79 -128.00 -2.15 -41.35 16 7 O -1.02 -50.58 16.70 -128.00 -2.14 -52.72 16 8 N -1.00 -41.67 3.23 -543.24 -1.75 -43.43 16 9 C 0.10 3.09 10.31 127.77 1.32 4.41 16 10 C 0.26 13.43 5.42 85.63 0.46 13.89 16 11 C -0.52 -27.49 9.38 25.60 0.24 -27.25 16 12 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 13 C 0.01 0.33 5.46 84.65 0.46 0.79 16 14 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 15 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 16 H -0.24 -9.78 6.70 99.48 0.67 -9.11 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 C 0.11 3.02 5.89 42.55 0.25 3.27 16 20 C -0.17 -3.71 9.77 22.36 0.22 -3.49 16 21 C -0.07 -1.52 10.18 22.47 0.23 -1.29 16 22 C -0.18 -4.33 10.11 22.36 0.23 -4.11 16 23 C 0.08 2.42 10.78 84.67 0.91 3.33 16 24 N -0.49 -16.20 9.47 -183.89 -1.74 -17.94 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.42 14.51 8.56 -96.75 -0.83 13.68 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 30 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.08 2.08 6.22 -2.38 -0.01 2.07 16 32 H 0.02 0.97 8.11 -2.38 -0.02 0.95 16 33 H 0.02 0.94 6.91 -2.39 -0.02 0.92 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -74.06 335.94 -1.36 -75.42 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.20 Total: 23.67 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 5.14 Total: -7.34 kcal Atomic # 7 Polarization: -151.14 SS G_CDS: -4.10 Total: -155.24 kcal Atomic # 8 Polarization: -89.77 SS G_CDS: -4.29 Total: -94.06 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 113.06 SS G_CDS: -0.34 Total: 112.72 kcal Total: -74.06 -1.36 -75.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044648998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.260 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds