Wall clock time and date at job start Tue Mar 31 2020 03:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46597 * 2 1 4 4 O 1.42904 * 109.46932 * 240.00363 * 2 1 3 5 5 C 1.35705 * 116.99949 * 87.74997 * 4 2 1 6 6 C 1.38654 * 120.15030 * 354.27234 * 5 4 2 7 7 C 1.38103 * 120.09063 * 179.97438 * 6 5 4 8 8 C 1.38512 * 120.39291 * 0.02562 * 7 6 5 9 9 C 1.37819 * 120.29762 * 0.02562 * 8 7 6 10 10 C 1.39713 * 119.90350 * 0.27634 * 9 8 7 11 11 C 1.43194 * 120.19705 * 179.70248 * 10 9 8 12 12 N 4.92757 * 113.35051 * 229.32030 * 2 1 3 13 13 C 1.50698 * 109.47217 * 120.00442 * 2 1 3 14 14 O 1.21287 * 119.99793 * 108.22142 * 13 2 1 15 15 N 1.34774 * 119.99516 * 288.22346 * 13 2 1 16 16 C 1.37099 * 119.99794 * 185.34433 * 15 13 2 17 17 H 1.08005 * 119.99720 * 11.51985 * 16 15 13 18 18 C 1.38947 * 120.00242 * 191.52269 * 16 15 13 19 19 N 1.31413 * 120.00036 * 12.01425 * 18 16 15 20 20 Si 1.86799 * 120.00168 * 192.01120 * 18 16 15 21 21 H 1.48497 * 109.46989 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46988 * 119.99846 * 20 18 16 23 23 H 1.48499 * 109.47475 * 239.99902 * 20 18 16 24 24 C 1.46501 * 120.00593 * 5.33733 * 15 13 2 25 25 C 1.47202 * 109.46703 * 93.37163 * 24 15 13 26 26 N 4.30993 * 48.96464 * 78.27005 * 2 1 3 27 27 H 1.08997 * 109.47270 * 299.52069 * 1 2 3 28 28 H 1.09001 * 109.47175 * 59.52033 * 1 2 3 29 29 H 1.08999 * 109.47057 * 179.51636 * 1 2 3 30 30 H 1.07999 * 119.95139 * 359.96601 * 6 5 4 31 31 H 1.08005 * 119.79943 * 179.97438 * 7 6 5 32 32 H 1.08007 * 119.85219 * 180.02562 * 8 7 6 33 33 H 1.08001 * 120.04699 * 180.02562 * 9 8 7 34 34 H 0.97001 * 120.00354 * 180.02562 * 19 18 16 35 35 H 1.08991 * 109.47422 * 213.37313 * 24 15 13 36 36 H 1.09002 * 109.46852 * 333.37690 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1669 0.0745 -2.2876 6 6 1.7622 1.4006 -2.3037 7 6 1.9267 2.1609 -3.4448 8 6 2.4951 1.6070 -4.5801 9 6 2.9021 0.2903 -4.5822 10 6 2.7358 -0.4920 -3.4367 11 6 3.1506 -1.8626 -3.4340 12 7 3.4831 -2.9489 -3.4308 13 6 2.0323 -0.7105 1.2304 14 8 2.5441 -1.8056 1.1317 15 7 1.9128 -0.1289 2.4403 16 6 2.4666 -0.7237 3.5445 17 1 3.1513 -1.5505 3.4261 18 6 2.1470 -0.2627 4.8157 19 7 1.1472 0.5743 4.9790 20 14 3.1385 -0.8329 6.2926 21 1 4.2025 -1.7666 5.8439 22 1 3.7590 0.3420 6.9557 23 1 2.2426 -1.5270 7.2522 24 6 1.1913 1.1389 2.5757 25 6 -0.2146 0.8691 2.9185 26 7 -1.2996 0.6609 3.1831 27 1 -0.3633 0.5063 0.8942 28 1 -0.3633 0.5213 -0.8857 29 1 -0.3633 -1.0276 -0.0087 30 1 1.3177 1.8394 -1.4227 31 1 1.6095 3.1933 -3.4523 32 1 2.6200 2.2098 -5.4676 33 1 3.3452 -0.1373 -5.4695 34 1 0.9242 0.8964 5.8664 35 1 1.6495 1.7354 3.3644 36 1 1.2371 1.6854 1.6336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065624530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:00 Heat of formation + Delta-G solvation = 40.615616 kcal Electronic energy + Delta-G solvation = -23499.120527 eV Core-core repulsion = 19950.582265 eV Total energy + Delta-G solvation = -3548.538262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67346 -39.12149 -37.47060 -36.19243 -35.91356 -34.41067 -32.61832 -31.65151 -30.96357 -29.92634 -27.59156 -25.57374 -24.09236 -23.93820 -22.20235 -19.69473 -19.39784 -18.19064 -17.53936 -16.68161 -16.35105 -15.90009 -15.49564 -15.21339 -14.95610 -14.49992 -14.24944 -13.95523 -13.60514 -13.53165 -13.16730 -13.06725 -12.84168 -12.62609 -12.28759 -12.11624 -11.88012 -11.84193 -11.69659 -11.61920 -11.30045 -11.26630 -11.04058 -10.95613 -10.59962 -10.44497 -10.39532 -9.43260 -9.21423 -8.76061 -8.32453 -8.27517 -6.59992 -4.14903 0.68080 1.18750 2.85241 2.87092 2.98783 2.99644 3.16605 3.23861 3.36964 3.69336 3.82214 3.90811 3.95801 4.05451 4.50578 4.64914 4.73234 4.75631 4.82835 5.01425 5.08458 5.10547 5.15032 5.30262 5.35783 5.57167 5.73509 5.76295 5.90560 6.00824 6.02755 6.20135 6.29286 6.46104 6.53099 7.21150 7.33856 7.67843 7.71462 8.13318 8.69742 8.84227 9.01685 9.51477 10.42106 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.004273 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.089480 B = 6550.878391 C = 7292.690809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 H 0.094 0.906 4 O -0.274 6.274 5 C 0.186 3.814 6 C -0.216 4.216 7 C -0.047 4.047 8 C -0.167 4.167 9 C -0.033 4.033 10 C -0.066 4.066 11 C 0.262 3.738 12 N -0.416 5.416 13 C 0.455 3.545 14 O -0.548 6.548 15 N -0.439 5.439 16 C -0.302 4.302 17 H 0.112 0.888 18 C 0.030 3.970 19 N -0.890 5.890 20 Si 0.938 3.062 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.281 1.281 24 C 0.217 3.783 25 C 0.255 3.745 26 N -0.476 5.476 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.276 0.724 35 H 0.140 0.860 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 10.846 -14.377 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.010 3.990 3 H 0.112 0.888 4 O -0.184 6.184 5 C 0.136 3.864 6 C -0.235 4.235 7 C -0.066 4.066 8 C -0.186 4.186 9 C -0.053 4.053 10 C -0.071 4.071 11 C -0.054 4.054 12 N -0.092 5.092 13 C 0.242 3.758 14 O -0.428 6.428 15 N -0.161 5.161 16 C -0.429 4.429 17 H 0.130 0.870 18 C -0.172 4.172 19 N -0.531 5.531 20 Si 0.764 3.236 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.207 1.207 24 C 0.090 3.910 25 C -0.062 4.062 26 N -0.157 5.157 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.556 8.145 -13.786 16.022 hybrid contribution 0.426 0.545 1.017 1.230 sum 0.982 8.691 -12.769 15.477 Atomic orbital electron populations 1.22493 0.93018 1.04681 1.03676 1.22435 0.95502 0.96805 0.84234 0.88827 1.86266 1.79286 1.36102 1.16743 1.19149 0.91033 0.90045 0.86202 1.21339 1.07715 0.93273 1.01179 1.21176 0.94090 0.99601 0.91736 1.20942 1.03263 0.95076 0.99292 1.20994 0.95482 0.93345 0.95489 1.15325 1.09706 0.87517 0.94514 1.25298 0.93717 0.92477 0.93875 1.81198 1.09175 1.11609 1.07217 1.19475 0.85722 0.87000 0.83640 1.90622 1.47054 1.19847 1.85290 1.43586 1.47285 1.19067 1.06202 1.19915 1.23318 1.17071 0.82548 0.86986 1.25299 0.96056 0.96716 0.99146 1.69633 1.25850 1.33216 1.24365 0.85654 0.79332 0.78637 0.79959 1.19051 1.20302 1.20702 1.19018 0.82150 0.88245 1.01572 1.28910 0.93970 0.93075 0.90238 1.80932 1.14869 1.07776 1.12144 0.89747 0.91142 0.90720 0.84023 0.84971 0.84984 0.84532 0.91325 0.84306 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 8.97 37.16 0.33 -2.39 16 2 C 0.07 1.16 1.79 -27.88 -0.05 1.11 16 3 H 0.09 1.21 4.97 -51.93 -0.26 0.95 16 4 O -0.27 -4.81 8.78 -38.45 -0.34 -5.15 16 5 C 0.19 2.51 6.63 -38.70 -0.26 2.26 16 6 C -0.22 -2.15 8.38 -39.48 -0.33 -2.48 16 7 C -0.05 -0.35 10.03 -39.53 -0.40 -0.75 16 8 C -0.17 -1.17 10.02 -39.63 -0.40 -1.57 16 9 C -0.03 -0.29 9.75 -39.18 -0.38 -0.67 16 10 C -0.07 -0.84 5.75 -106.70 -0.61 -1.46 16 11 C 0.26 4.16 14.87 -22.47 -0.33 3.82 16 12 N -0.42 -7.63 18.54 41.84 0.78 -6.86 16 13 C 0.46 10.14 6.98 -10.99 -0.08 10.07 16 14 O -0.55 -14.79 16.18 -14.08 -0.23 -15.02 16 15 N -0.44 -9.81 2.59 -117.94 -0.31 -10.12 16 16 C -0.30 -7.54 9.45 -14.93 -0.14 -7.68 16 17 H 0.11 2.99 7.29 -52.48 -0.38 2.61 16 18 C 0.03 0.70 5.19 -17.47 -0.09 0.61 16 19 N -0.89 -21.10 8.39 55.50 0.47 -20.64 16 20 Si 0.94 19.35 29.57 -169.99 -5.03 14.32 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 C 0.22 4.01 4.76 -6.83 -0.03 3.97 16 25 C 0.26 5.30 10.46 -20.76 -0.22 5.08 16 26 N -0.48 -10.75 18.53 42.15 0.78 -9.97 16 27 H 0.08 1.33 3.81 -51.93 -0.20 1.14 16 28 H 0.07 0.82 7.21 -51.93 -0.37 0.45 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.14 1.21 5.53 -52.49 -0.29 0.92 16 31 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 32 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.28 6.37 8.31 -40.82 -0.34 6.03 16 35 H 0.14 2.63 6.33 -51.93 -0.33 2.30 16 36 H 0.08 1.00 5.67 -51.93 -0.29 0.71 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -32.81 318.35 -5.02 -37.83 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -2.95 Total: 0.87 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -2.99 Total: 9.93 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 1.72 Total: -47.58 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.57 Total: -20.17 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.81 -5.02 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065624530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.445 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds