Wall clock time and date at job start Tue Mar 31 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46597 * 2 1 4 4 O 1.42904 * 109.46932 * 240.00363 * 2 1 3 5 5 C 1.35705 * 116.99949 * 87.74997 * 4 2 1 6 6 C 1.38654 * 120.15030 * 354.27234 * 5 4 2 7 7 C 1.38103 * 120.09063 * 179.97438 * 6 5 4 8 8 C 1.38512 * 120.39291 * 0.02562 * 7 6 5 9 9 C 1.37819 * 120.29762 * 0.02562 * 8 7 6 10 10 C 1.39713 * 119.90350 * 0.27634 * 9 8 7 11 11 C 1.43194 * 120.19705 * 179.70248 * 10 9 8 12 12 N 4.92757 * 113.35051 * 229.32030 * 2 1 3 13 13 C 1.50698 * 109.47217 * 120.00442 * 2 1 3 14 14 O 1.21287 * 119.99793 * 108.22142 * 13 2 1 15 15 N 1.34774 * 119.99516 * 288.22346 * 13 2 1 16 16 C 1.37099 * 119.99794 * 185.34433 * 15 13 2 17 17 H 1.08005 * 119.99720 * 11.51985 * 16 15 13 18 18 C 1.38947 * 120.00242 * 191.52269 * 16 15 13 19 19 N 1.31413 * 120.00036 * 12.01425 * 18 16 15 20 20 Si 1.86799 * 120.00168 * 192.01120 * 18 16 15 21 21 H 1.48497 * 109.46989 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46988 * 119.99846 * 20 18 16 23 23 H 1.48499 * 109.47475 * 239.99902 * 20 18 16 24 24 C 1.46501 * 120.00593 * 5.33733 * 15 13 2 25 25 C 1.47202 * 109.46703 * 93.37163 * 24 15 13 26 26 N 4.30993 * 48.96464 * 78.27005 * 2 1 3 27 27 H 1.08997 * 109.47270 * 299.52069 * 1 2 3 28 28 H 1.09001 * 109.47175 * 59.52033 * 1 2 3 29 29 H 1.08999 * 109.47057 * 179.51636 * 1 2 3 30 30 H 1.07999 * 119.95139 * 359.96601 * 6 5 4 31 31 H 1.08005 * 119.79943 * 179.97438 * 7 6 5 32 32 H 1.08007 * 119.85219 * 180.02562 * 8 7 6 33 33 H 1.08001 * 120.04699 * 180.02562 * 9 8 7 34 34 H 0.97001 * 120.00354 * 180.02562 * 19 18 16 35 35 H 1.08991 * 109.47422 * 213.37313 * 24 15 13 36 36 H 1.09002 * 109.46852 * 333.37690 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1669 0.0745 -2.2876 6 6 1.7622 1.4006 -2.3037 7 6 1.9267 2.1609 -3.4448 8 6 2.4951 1.6070 -4.5801 9 6 2.9021 0.2903 -4.5822 10 6 2.7358 -0.4920 -3.4367 11 6 3.1506 -1.8626 -3.4340 12 7 3.4831 -2.9489 -3.4308 13 6 2.0323 -0.7105 1.2304 14 8 2.5441 -1.8056 1.1317 15 7 1.9128 -0.1289 2.4403 16 6 2.4666 -0.7237 3.5445 17 1 3.1513 -1.5505 3.4261 18 6 2.1470 -0.2627 4.8157 19 7 1.1472 0.5743 4.9790 20 14 3.1385 -0.8329 6.2926 21 1 4.2025 -1.7666 5.8439 22 1 3.7590 0.3420 6.9557 23 1 2.2426 -1.5270 7.2522 24 6 1.1913 1.1389 2.5757 25 6 -0.2146 0.8691 2.9185 26 7 -1.2996 0.6609 3.1831 27 1 -0.3633 0.5063 0.8942 28 1 -0.3633 0.5213 -0.8857 29 1 -0.3633 -1.0276 -0.0087 30 1 1.3177 1.8394 -1.4227 31 1 1.6095 3.1933 -3.4523 32 1 2.6200 2.2098 -5.4676 33 1 3.3452 -0.1373 -5.4695 34 1 0.9242 0.8964 5.8664 35 1 1.6495 1.7354 3.3644 36 1 1.2371 1.6854 1.6336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065624530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:59 Heat of formation + Delta-G solvation = 20.141922 kcal Electronic energy + Delta-G solvation = -23500.008333 eV Core-core repulsion = 19950.582265 eV Total energy + Delta-G solvation = -3549.426068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79893 -40.52043 -38.58543 -37.66822 -37.36315 -36.17309 -34.20379 -32.88668 -31.96981 -30.79605 -29.21562 -27.24109 -25.30013 -24.81495 -23.25424 -21.10564 -20.41727 -19.90749 -18.64250 -18.14674 -17.87978 -17.13674 -16.69536 -16.44404 -16.07272 -15.73104 -15.39622 -15.33170 -15.10739 -15.01246 -14.60730 -14.13684 -14.04216 -13.82077 -13.73341 -13.52451 -13.33277 -13.13575 -13.06984 -12.89584 -12.76762 -12.45496 -12.36166 -12.23977 -12.11611 -12.05114 -11.80760 -11.22182 -10.48681 -10.09363 -9.94194 -9.21358 -8.43511 -6.05230 -0.10832 0.46622 1.31471 1.43156 1.53176 1.67795 1.68205 1.74736 2.01479 2.12596 2.27184 2.39328 2.93452 2.95628 2.99097 3.04072 3.56028 3.61387 3.76092 3.91371 3.98197 4.07631 4.30719 4.49090 4.50532 4.54918 4.58669 4.64858 4.95342 4.99908 5.07865 5.29275 5.40447 5.42644 5.57299 5.77090 5.90654 6.23939 6.37060 6.54882 7.01357 7.06662 7.22673 7.76341 8.54898 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.004273 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.089480 B = 6550.878391 C = 7292.690809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 H 0.138 0.862 4 O -0.315 6.315 5 C 0.154 3.846 6 C -0.217 4.217 7 C -0.030 4.030 8 C -0.150 4.150 9 C -0.026 4.026 10 C -0.097 4.097 11 C 0.278 3.722 12 N -0.482 5.482 13 C 0.442 3.558 14 O -0.612 6.612 15 N -0.447 5.447 16 C -0.334 4.334 17 H 0.079 0.921 18 C 0.009 3.991 19 N -0.893 5.893 20 Si 0.990 3.010 21 H -0.278 1.278 22 H -0.257 1.257 23 H -0.287 1.287 24 C 0.216 3.784 25 C 0.268 3.732 26 N -0.511 5.511 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.043 0.957 30 H 0.160 0.840 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.157 0.843 34 H 0.278 0.722 35 H 0.138 0.862 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 15.175 -16.162 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.024 3.976 3 H 0.156 0.844 4 O -0.227 6.227 5 C 0.105 3.895 6 C -0.235 4.235 7 C -0.048 4.048 8 C -0.168 4.168 9 C -0.046 4.046 10 C -0.101 4.101 11 C -0.035 4.035 12 N -0.159 5.159 13 C 0.231 3.769 14 O -0.496 6.496 15 N -0.167 5.167 16 C -0.461 4.461 17 H 0.097 0.903 18 C -0.192 4.192 19 N -0.533 5.533 20 Si 0.815 3.185 21 H -0.203 1.203 22 H -0.182 1.182 23 H -0.213 1.213 24 C 0.090 3.910 25 C -0.048 4.048 26 N -0.193 5.193 27 H 0.097 0.903 28 H 0.131 0.869 29 H 0.062 0.938 30 H 0.177 0.823 31 H 0.192 0.808 32 H 0.190 0.810 33 H 0.175 0.825 34 H 0.089 0.911 35 H 0.155 0.845 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.082 12.532 -15.580 19.995 hybrid contribution 0.563 -0.706 1.458 1.715 sum 0.644 11.826 -14.121 18.431 Atomic orbital electron populations 1.22441 0.91824 1.03331 1.05312 1.22267 0.95979 0.97531 0.81798 0.84446 1.86208 1.80481 1.38066 1.17977 1.19483 0.93335 0.91613 0.85043 1.21591 1.07353 0.91587 1.03012 1.21706 0.91745 1.01026 0.90348 1.21460 1.00684 0.94114 1.00560 1.21327 0.94753 0.93954 0.94600 1.15708 1.11849 0.86259 0.96280 1.26080 0.92175 0.93204 0.92090 1.81181 1.11857 1.13569 1.09332 1.20610 0.84331 0.86613 0.85337 1.90574 1.49662 1.22850 1.86528 1.43733 1.47080 1.20158 1.05758 1.19721 1.24460 1.17593 0.84360 0.90291 1.25824 0.96516 0.96526 1.00384 1.69721 1.25751 1.32970 1.24879 0.84899 0.77809 0.78573 0.77224 1.20253 1.18151 1.21327 1.19373 0.80198 0.86752 1.04677 1.29333 0.94246 0.92067 0.89197 1.80936 1.16143 1.08758 1.13455 0.90288 0.86896 0.93763 0.82260 0.80843 0.81040 0.82519 0.91101 0.84471 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 8.97 71.98 0.65 -4.24 16 2 C 0.08 2.67 1.79 29.85 0.05 2.73 16 3 H 0.14 3.04 4.97 -2.39 -0.01 3.03 16 4 O -0.32 -11.16 8.78 -71.48 -0.63 -11.79 16 5 C 0.15 3.90 6.63 22.84 0.15 4.06 16 6 C -0.22 -3.33 8.38 22.34 0.19 -3.14 16 7 C -0.03 -0.25 10.03 22.30 0.22 -0.03 16 8 C -0.15 -1.22 10.02 22.24 0.22 -1.00 16 9 C -0.03 -0.37 9.75 22.53 0.22 -0.15 16 10 C -0.10 -2.36 5.75 -21.21 -0.12 -2.48 16 11 C 0.28 9.23 14.87 88.33 1.31 10.54 16 12 N -0.48 -18.91 18.54 19.00 0.35 -18.56 16 13 C 0.44 20.25 6.98 87.66 0.61 20.87 16 14 O -0.61 -35.21 16.18 15.72 0.25 -34.96 16 15 N -0.45 -20.15 2.59 -645.43 -1.67 -21.83 16 16 C -0.33 -17.26 9.45 84.04 0.79 -16.47 16 17 H 0.08 4.53 7.29 -2.91 -0.02 4.50 16 18 C 0.01 0.42 5.19 84.93 0.44 0.86 16 19 N -0.89 -41.80 8.39 21.66 0.18 -41.62 16 20 Si 0.99 39.95 29.57 68.60 2.03 41.98 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 23 H -0.29 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.22 7.58 4.76 84.57 0.40 7.98 16 25 C 0.27 10.82 10.46 89.44 0.94 11.75 16 26 N -0.51 -22.73 18.53 20.01 0.37 -22.36 16 27 H 0.08 2.33 3.81 -2.39 -0.01 2.32 16 28 H 0.11 2.22 7.21 -2.39 -0.02 2.21 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.16 1.79 5.53 -2.91 -0.02 1.77 16 31 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 32 H 0.17 0.17 8.06 -2.91 -0.02 0.15 16 33 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.28 12.56 8.31 -92.71 -0.77 11.79 16 35 H 0.14 4.95 6.33 -2.39 -0.02 4.93 16 36 H 0.14 3.06 5.67 -2.39 -0.01 3.04 16 Total: -1.00 -79.98 318.35 8.12 -71.85 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.16 Total: 6.00 kcal Atomic # 6 Polarization: 25.20 SS G_CDS: 6.08 Total: 31.28 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -0.77 Total: -104.36 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.37 Total: -46.75 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -79.98 8.12 -71.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065624530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.994 kcal (2) G-P(sol) polarization free energy of solvation -79.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds