Wall clock time and date at job start Tue Mar 31 2020 03:37:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46498 * 109.47090 * 2 1
4 4 C 1.46502 * 119.99980 * 270.00254 * 3 2 1
5 5 C 1.50693 * 109.47109 * 269.99727 * 4 3 2
6 6 H 1.08005 * 120.00206 * 359.97438 * 5 4 3
7 7 C 1.37883 * 120.00312 * 180.02562 * 5 4 3
8 8 N 1.31514 * 120.00297 * 180.02562 * 7 5 4
9 9 Si 1.86799 * 119.99457 * 359.97438 * 7 5 4
10 10 H 1.48501 * 109.47261 * 90.00549 * 9 7 5
11 11 H 1.48508 * 109.46725 * 210.00230 * 9 7 5
12 12 H 1.48500 * 109.47258 * 329.99994 * 9 7 5
13 13 C 1.34781 * 119.99955 * 89.99842 * 3 2 1
14 14 O 1.21285 * 119.99984 * 180.02562 * 13 3 2
15 15 C 1.50697 * 119.99769 * 0.02562 * 13 3 2
16 16 C 1.52999 * 109.46825 * 179.97438 * 15 13 3
17 17 S 1.81001 * 109.47178 * 180.02562 * 16 15 13
18 18 C 1.76201 * 100.00336 * 180.02562 * 17 16 15
19 19 N 1.31541 * 126.44793 * 359.97438 * 18 17 16
20 20 N 1.28424 * 110.49728 * 180.02562 * 19 18 17
21 21 N 1.28903 * 110.34255 * 0.02562 * 20 19 18
22 22 N 1.35390 * 126.45619 * 180.02562 * 18 17 16
23 23 C 1.46504 * 127.38494 * 359.96145 * 22 18 17
24 24 H 1.08999 * 109.47574 * 299.99437 * 1 2 3
25 25 H 1.09001 * 109.47620 * 60.00017 * 1 2 3
26 26 H 1.09000 * 109.46967 * 180.02562 * 1 2 3
27 27 H 1.09006 * 109.47181 * 240.00015 * 2 1 3
28 28 H 1.08997 * 109.47185 * 119.99817 * 2 1 3
29 29 H 1.08996 * 109.47310 * 29.99966 * 4 3 2
30 30 H 1.09005 * 109.46818 * 149.99744 * 4 3 2
31 31 H 0.96998 * 119.99710 * 180.02562 * 8 7 5
32 32 H 1.09003 * 109.46837 * 60.00273 * 15 13 3
33 33 H 1.08996 * 109.47386 * 299.99631 * 15 13 3
34 34 H 1.09003 * 109.46809 * 60.00722 * 16 15 13
35 35 H 1.08999 * 109.47719 * 300.00138 * 16 15 13
36 36 H 1.08996 * 109.47324 * 89.99735 * 23 22 18
37 37 H 1.09001 * 109.47463 * 209.99721 * 23 22 18
38 38 H 1.09005 * 109.47095 * 329.99891 * 23 22 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2624 2.0718 -1.2687
5 6 3.6856 1.8351 -1.7038
6 1 4.3428 1.2310 -1.0958
7 6 4.1492 2.3906 -2.8775
8 7 5.3912 2.1836 -3.2574
9 14 3.0128 3.4360 -3.9287
10 1 3.1154 4.8562 -3.5069
11 1 3.4064 3.3137 -5.3554
12 1 1.6133 2.9692 -3.7596
13 6 2.2429 2.0166 1.1672
14 8 2.6467 3.1602 1.1673
15 6 1.9922 1.3059 2.4723
16 6 2.3241 2.2432 3.6352
17 16 2.0237 1.3895 5.2027
18 6 2.4732 2.6621 6.3354
19 7 2.8989 3.8680 6.0272
20 7 3.1389 4.5458 7.0913
21 7 2.8901 3.8377 8.1393
22 7 2.4465 2.5828 7.6867
23 6 2.0419 1.4351 8.5025
24 1 -0.3634 0.5137 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 1.8933 -0.5139 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 1.5816 1.6878 -2.0284
30 1 2.0953 3.1411 -1.1383
31 1 5.7174 2.5747 -4.0830
32 1 2.6228 0.4187 2.5298
33 1 0.9444 1.0114 2.5302
34 1 1.6937 3.1306 3.5778
35 1 3.3720 2.5374 3.5772
36 1 2.9105 0.8083 8.7039
37 1 1.6227 1.7886 9.4445
38 1 1.2914 0.8545 7.9660
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084408721.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:37:04
Heat of formation + Delta-G solvation = 82.233474 kcal
Electronic energy + Delta-G solvation = -21404.651546 eV
Core-core repulsion = 18025.654672 eV
Total energy + Delta-G solvation = -3378.996874 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 299.116 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-43.08227 -39.34987 -35.56818 -35.46601 -33.24513 -32.57296 -32.29390 -30.37685
-28.65443 -27.98375 -25.09581 -23.66168 -23.28339 -23.04293 -21.76933 -18.57126
-18.22005 -17.10420 -17.06101 -16.96548 -16.74016 -15.69810 -15.52068 -14.80708
-14.32082 -14.24495 -14.15560 -13.65248 -13.55110 -13.16227 -12.82047 -12.70136
-12.51861 -12.36756 -12.17890 -11.95558 -11.67013 -11.43958 -11.36998 -11.18127
-11.01155 -10.90224 -10.75564 -10.70437 -10.51708 -10.18180 -9.57144 -9.14179
-8.60425 -8.34548 -7.80317 -6.10381 -4.09528 0.39179 0.60579 1.56441
1.81196 2.00579 3.21388 3.28292 3.34048 3.36550 3.73963 3.84814
4.38263 4.45138 4.50917 4.61022 4.79177 4.84737 4.92034 5.05952
5.10083 5.14815 5.23487 5.37635 5.47371 5.57036 5.66557 5.68382
5.87277 5.92350 6.09074 6.33458 6.66167 6.91058 7.27000 7.58606
8.15580 8.17796 8.43914 8.84700 8.93464 9.49664 11.02960
Molecular weight = 299.12amu
Principal moments of inertia in cm(-1)
A = 0.022936 B = 0.003173 C = 0.002926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.495448 B = 8822.740932 C = 9568.304144
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.104 3.896
3 N -0.590 5.590
4 C 0.216 3.784
5 C -0.530 4.530
6 H 0.075 0.925
7 C 0.073 3.927
8 N -0.897 5.897
9 Si 0.876 3.124
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.266 1.266
13 C 0.514 3.486
14 O -0.533 6.533
15 C -0.129 4.129
16 C -0.088 4.088
17 S 0.026 5.974
18 C 0.217 3.783
19 N -0.325 5.325
20 N -0.029 5.029
21 N -0.087 5.087
22 N -0.369 5.369
23 C 0.088 3.912
24 H 0.051 0.949
25 H 0.059 0.941
26 H 0.062 0.938
27 H 0.086 0.914
28 H 0.069 0.931
29 H 0.030 0.970
30 H 0.037 0.963
31 H 0.265 0.735
32 H 0.101 0.899
33 H 0.099 0.901
34 H 0.111 0.889
35 H 0.113 0.887
36 H 0.094 0.906
37 H 0.105 0.895
38 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.116 -9.151 19.532 24.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.020 4.020
3 N -0.322 5.322
4 C 0.096 3.904
5 C -0.569 4.569
6 H 0.093 0.907
7 C -0.130 4.130
8 N -0.535 5.535
9 Si 0.703 3.297
10 H -0.198 1.198
11 H -0.211 1.211
12 H -0.191 1.191
13 C 0.298 3.702
14 O -0.410 6.410
15 C -0.172 4.172
16 C -0.237 4.237
17 S 0.252 5.748
18 C -0.168 4.168
19 N -0.181 5.181
20 N -0.025 5.025
21 N -0.074 5.074
22 N -0.169 5.169
23 C -0.054 4.054
24 H 0.071 0.929
25 H 0.078 0.922
26 H 0.081 0.919
27 H 0.104 0.896
28 H 0.087 0.913
29 H 0.048 0.952
30 H 0.055 0.945
31 H 0.075 0.925
32 H 0.120 0.880
33 H 0.117 0.883
34 H 0.129 0.871
35 H 0.132 0.868
36 H 0.113 0.887
37 H 0.123 0.877
38 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -11.691 -8.292 19.939 24.556
hybrid contribution -0.288 0.723 -0.753 1.083
sum -11.979 -7.569 19.186 23.851
Atomic orbital electron populations
1.22241 0.96690 1.01668 1.02303 1.21476 0.93437 0.83765 1.03275
1.47922 1.63937 1.13424 1.06915 1.19670 0.97382 0.93428 0.79924
1.21315 0.95303 1.33054 1.07191 0.90737 1.24857 0.94990 0.95766
0.97362 1.69893 1.15141 1.44883 1.23593 0.86858 0.81411 0.81684
0.79774 1.19850 1.21076 1.19075 1.19930 0.78704 0.86903 0.84653
1.90728 1.45309 1.17951 1.87006 1.21487 1.04249 0.99309 0.92117
1.23527 1.08954 1.01339 0.89891 1.85484 1.80874 1.11006 0.97413
1.27745 1.00939 1.00118 0.88015 1.75077 1.20586 1.00917 1.21499
1.77910 1.10716 1.21522 0.92392 1.82468 1.18175 0.87708 1.19053
1.51505 1.47577 1.13497 1.04289 1.22254 1.02513 0.84305 0.96376
0.92946 0.92156 0.91896 0.89581 0.91310 0.95173 0.94504 0.92524
0.88037 0.88296 0.87085 0.86841 0.88722 0.87659 0.88012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.89 10.24 37.15 0.38 -1.51 16
2 C 0.10 1.45 5.93 -4.05 -0.02 1.42 16
3 N -0.59 -11.24 2.46 -175.07 -0.43 -11.67 16
4 C 0.22 5.10 4.23 -5.20 -0.02 5.08 16
5 C -0.53 -14.90 9.94 -34.44 -0.34 -15.25 16
6 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16
7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16
8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16
9 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16
10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16
13 C 0.51 9.55 7.67 -10.98 -0.08 9.47 16
14 O -0.53 -12.45 15.56 5.55 0.09 -12.36 16
15 C -0.13 -1.57 4.25 -27.88 -0.12 -1.69 16
16 C -0.09 -1.10 4.52 37.16 0.17 -0.93 16
17 S 0.03 0.24 21.79 -107.50 -2.34 -2.10 16
18 C 0.22 2.62 8.15 -89.18 -0.73 1.89 16
19 N -0.32 -5.06 11.57 30.50 0.35 -4.71 16
20 N -0.03 -0.47 13.38 60.35 0.81 0.34 16
21 N -0.09 -1.17 13.93 60.35 0.84 -0.33 16
22 N -0.37 -3.84 4.09 -68.10 -0.28 -4.12 16
23 C 0.09 0.39 11.40 59.85 0.68 1.08 16
24 H 0.05 0.53 7.22 -51.93 -0.38 0.15 16
25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16
28 H 0.07 0.76 6.44 -51.93 -0.33 0.42 16
29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16
30 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16
31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
32 H 0.10 1.05 7.40 -51.93 -0.38 0.67 16
33 H 0.10 0.92 7.19 -51.93 -0.37 0.55 16
34 H 0.11 1.51 8.10 -51.92 -0.42 1.09 16
35 H 0.11 1.65 8.10 -51.92 -0.42 1.23 16
36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16
37 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16
38 H 0.10 0.27 7.85 -51.93 -0.41 -0.14 16
LS Contribution 340.05 15.07 5.12 5.12
Total: -1.00 -36.61 340.05 -5.06 -41.67
By element:
Atomic # 1 Polarization: 1.71 SS G_CDS: -5.14 Total: -3.43 kcal
Atomic # 6 Polarization: 1.75 SS G_CDS: -0.18 Total: 1.57 kcal
Atomic # 7 Polarization: -49.23 SS G_CDS: 2.07 Total: -47.16 kcal
Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal
Atomic # 16 Polarization: 0.24 SS G_CDS: -2.34 Total: -2.10 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -36.61 -5.06 -41.67 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084408721.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.908 kcal
(2) G-P(sol) polarization free energy of solvation -36.613 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.295 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.233 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds