Wall clock time and date at job start Tue Mar 31 2020 03:37:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46498 * 109.47090 * 2 1
4 4 C 1.46502 * 119.99980 * 270.00254 * 3 2 1
5 5 C 1.50693 * 109.47109 * 269.99727 * 4 3 2
6 6 H 1.08005 * 120.00206 * 359.97438 * 5 4 3
7 7 C 1.37883 * 120.00312 * 180.02562 * 5 4 3
8 8 N 1.31514 * 120.00297 * 180.02562 * 7 5 4
9 9 Si 1.86799 * 119.99457 * 359.97438 * 7 5 4
10 10 H 1.48501 * 109.47261 * 90.00549 * 9 7 5
11 11 H 1.48508 * 109.46725 * 210.00230 * 9 7 5
12 12 H 1.48500 * 109.47258 * 329.99994 * 9 7 5
13 13 C 1.34781 * 119.99955 * 89.99842 * 3 2 1
14 14 O 1.21285 * 119.99984 * 180.02562 * 13 3 2
15 15 C 1.50697 * 119.99769 * 0.02562 * 13 3 2
16 16 C 1.52999 * 109.46825 * 179.97438 * 15 13 3
17 17 S 1.81001 * 109.47178 * 180.02562 * 16 15 13
18 18 C 1.76201 * 100.00336 * 180.02562 * 17 16 15
19 19 N 1.31541 * 126.44793 * 359.97438 * 18 17 16
20 20 N 1.28424 * 110.49728 * 180.02562 * 19 18 17
21 21 N 1.28903 * 110.34255 * 0.02562 * 20 19 18
22 22 N 1.35390 * 126.45619 * 180.02562 * 18 17 16
23 23 C 1.46504 * 127.38494 * 359.96145 * 22 18 17
24 24 H 1.08999 * 109.47574 * 299.99437 * 1 2 3
25 25 H 1.09001 * 109.47620 * 60.00017 * 1 2 3
26 26 H 1.09000 * 109.46967 * 180.02562 * 1 2 3
27 27 H 1.09006 * 109.47181 * 240.00015 * 2 1 3
28 28 H 1.08997 * 109.47185 * 119.99817 * 2 1 3
29 29 H 1.08996 * 109.47310 * 29.99966 * 4 3 2
30 30 H 1.09005 * 109.46818 * 149.99744 * 4 3 2
31 31 H 0.96998 * 119.99710 * 180.02562 * 8 7 5
32 32 H 1.09003 * 109.46837 * 60.00273 * 15 13 3
33 33 H 1.08996 * 109.47386 * 299.99631 * 15 13 3
34 34 H 1.09003 * 109.46809 * 60.00722 * 16 15 13
35 35 H 1.08999 * 109.47719 * 300.00138 * 16 15 13
36 36 H 1.08996 * 109.47324 * 89.99735 * 23 22 18
37 37 H 1.09001 * 109.47463 * 209.99721 * 23 22 18
38 38 H 1.09005 * 109.47095 * 329.99891 * 23 22 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2624 2.0718 -1.2687
5 6 3.6856 1.8351 -1.7038
6 1 4.3428 1.2310 -1.0958
7 6 4.1492 2.3906 -2.8775
8 7 5.3912 2.1836 -3.2574
9 14 3.0128 3.4360 -3.9287
10 1 3.1154 4.8562 -3.5069
11 1 3.4064 3.3137 -5.3554
12 1 1.6133 2.9692 -3.7596
13 6 2.2429 2.0166 1.1672
14 8 2.6467 3.1602 1.1673
15 6 1.9922 1.3059 2.4723
16 6 2.3241 2.2432 3.6352
17 16 2.0237 1.3895 5.2027
18 6 2.4732 2.6621 6.3354
19 7 2.8989 3.8680 6.0272
20 7 3.1389 4.5458 7.0913
21 7 2.8901 3.8377 8.1393
22 7 2.4465 2.5828 7.6867
23 6 2.0419 1.4351 8.5025
24 1 -0.3634 0.5137 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 1.8933 -0.5139 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 1.5816 1.6878 -2.0284
30 1 2.0953 3.1411 -1.1383
31 1 5.7174 2.5747 -4.0830
32 1 2.6228 0.4187 2.5298
33 1 0.9444 1.0114 2.5302
34 1 1.6937 3.1306 3.5778
35 1 3.3720 2.5374 3.5772
36 1 2.9105 0.8083 8.7039
37 1 1.6227 1.7886 9.4445
38 1 1.2914 0.8545 7.9660
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084408721.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:37:04
Heat of formation + Delta-G solvation = 55.055649 kcal
Electronic energy + Delta-G solvation = -21405.830065 eV
Core-core repulsion = 18025.654672 eV
Total energy + Delta-G solvation = -3380.175393 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 299.116 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-44.03777 -40.80841 -37.04308 -36.26941 -34.94660 -34.03339 -33.37358 -31.74644
-29.69658 -29.25328 -26.36182 -24.70008 -24.34770 -24.22910 -23.26594 -19.88742
-19.11978 -19.08405 -18.18332 -17.94340 -17.79377 -17.17677 -16.82308 -16.13527
-15.77703 -15.19346 -14.89822 -14.70036 -14.67806 -14.58498 -14.24750 -13.84548
-13.70145 -13.50140 -13.34493 -13.19053 -13.07263 -12.68511 -12.54214 -12.35828
-12.30308 -12.12587 -12.01405 -11.84337 -11.77491 -11.72754 -11.54758 -10.82491
-10.67537 -9.39705 -9.10815 -8.33388 -6.37869 -0.44780 -0.30329 0.62521
0.97191 1.11866 1.32515 1.37246 1.44714 1.80368 2.31247 2.37051
3.01544 3.09962 3.51673 3.71274 3.79200 3.84341 4.06649 4.17064
4.25166 4.42929 4.47090 4.49863 4.58012 4.60133 4.71796 4.83869
4.90199 4.95903 4.98126 5.07180 5.08707 5.45453 5.50342 5.67969
6.24794 6.63993 6.72907 7.18714 7.22902 7.43328 8.83520
Molecular weight = 299.12amu
Principal moments of inertia in cm(-1)
A = 0.022936 B = 0.003173 C = 0.002926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.495448 B = 8822.740932 C = 9568.304144
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.095 3.905
3 N -0.599 5.599
4 C 0.225 3.775
5 C -0.534 4.534
6 H 0.031 0.969
7 C 0.010 3.990
8 N -0.946 5.946
9 Si 0.945 3.055
10 H -0.279 1.279
11 H -0.276 1.276
12 H -0.236 1.236
13 C 0.501 3.499
14 O -0.594 6.594
15 C -0.112 4.112
16 C -0.103 4.103
17 S 0.125 5.875
18 C 0.198 3.802
19 N -0.366 5.366
20 N -0.064 5.064
21 N -0.096 5.096
22 N -0.355 5.355
23 C 0.070 3.930
24 H 0.067 0.933
25 H 0.042 0.958
26 H 0.095 0.905
27 H 0.070 0.930
28 H 0.105 0.895
29 H 0.049 0.951
30 H 0.016 0.984
31 H 0.268 0.732
32 H 0.129 0.871
33 H 0.141 0.859
34 H 0.094 0.906
35 H 0.083 0.917
36 H 0.116 0.884
37 H 0.123 0.877
38 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.153 -11.784 20.890 28.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.027 4.027
3 N -0.330 5.330
4 C 0.102 3.898
5 C -0.573 4.573
6 H 0.049 0.951
7 C -0.188 4.188
8 N -0.586 5.586
9 Si 0.768 3.232
10 H -0.205 1.205
11 H -0.201 1.201
12 H -0.159 1.159
13 C 0.289 3.711
14 O -0.475 6.475
15 C -0.154 4.154
16 C -0.253 4.253
17 S 0.351 5.649
18 C -0.186 4.186
19 N -0.223 5.223
20 N -0.060 5.060
21 N -0.084 5.084
22 N -0.155 5.155
23 C -0.069 4.069
24 H 0.086 0.914
25 H 0.061 0.939
26 H 0.114 0.886
27 H 0.088 0.912
28 H 0.123 0.877
29 H 0.067 0.933
30 H 0.034 0.966
31 H 0.077 0.923
32 H 0.147 0.853
33 H 0.159 0.841
34 H 0.112 0.888
35 H 0.102 0.898
36 H 0.134 0.866
37 H 0.141 0.859
38 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -14.772 -11.006 21.337 28.188
hybrid contribution 0.699 1.382 -1.038 1.864
sum -14.073 -9.624 20.299 26.509
Atomic orbital electron populations
1.22181 0.93895 1.03756 1.02222 1.21850 0.95667 0.80806 1.04353
1.48052 1.63949 1.15358 1.05599 1.19283 0.94707 0.93014 0.82798
1.21593 0.97163 1.31933 1.06585 0.95057 1.25842 0.96652 0.97226
0.99060 1.70047 1.17429 1.46635 1.24529 0.85755 0.80648 0.78967
0.77820 1.20510 1.20083 1.15911 1.21075 0.77083 0.86490 0.86493
1.90697 1.47876 1.20903 1.88058 1.21444 1.07303 0.98811 0.87798
1.23387 1.06908 1.01886 0.93135 1.84969 1.79641 1.07327 0.93010
1.28251 1.00798 1.00153 0.89392 1.74955 1.22236 1.02736 1.22396
1.77873 1.12438 1.22803 0.92916 1.82318 1.18172 0.89042 1.18907
1.51825 1.45980 1.13554 1.04141 1.22882 1.04249 0.82917 0.96896
0.91421 0.93910 0.88639 0.91167 0.87719 0.93318 0.96603 0.92342
0.85314 0.84098 0.88771 0.89807 0.86573 0.85852 0.85407
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.93 10.24 71.98 0.74 -2.20 16
2 C 0.10 2.38 5.93 86.38 0.51 2.89 16
3 N -0.60 -22.39 2.46 -826.17 -2.03 -24.42 16
4 C 0.22 10.66 4.23 85.63 0.36 11.02 16
5 C -0.53 -31.08 9.94 25.60 0.25 -30.82 16
6 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16
7 C 0.01 0.60 5.47 84.66 0.46 1.06 16
8 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16
9 Si 0.95 44.56 27.47 68.60 1.88 46.44 16
10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16
11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16
12 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16
13 C 0.50 18.50 7.67 87.66 0.67 19.18 16
14 O -0.59 -28.93 15.56 -3.05 -0.05 -28.98 16
15 C -0.11 -2.42 4.25 29.85 0.13 -2.29 16
16 C -0.10 -2.47 4.52 71.98 0.33 -2.14 16
17 S 0.12 1.86 21.79 -56.49 -1.23 0.63 16
18 C 0.20 4.52 8.15 179.85 1.47 5.99 16
19 N -0.37 -11.64 11.57 -57.41 -0.66 -12.30 16
20 N -0.06 -2.11 13.38 37.02 0.50 -1.62 16
21 N -0.10 -2.57 13.93 37.02 0.52 -2.06 16
22 N -0.35 -6.70 4.09 -369.36 -1.51 -8.21 16
23 C 0.07 0.37 11.40 127.77 1.46 1.83 16
24 H 0.07 1.03 7.22 -2.39 -0.02 1.01 16
25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
27 H 0.07 1.98 8.07 -2.38 -0.02 1.97 16
28 H 0.10 1.85 6.44 -2.39 -0.02 1.84 16
29 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16
30 H 0.02 0.82 6.85 -2.38 -0.02 0.81 16
31 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16
32 H 0.13 2.13 7.40 -2.39 -0.02 2.11 16
33 H 0.14 1.89 7.19 -2.39 -0.02 1.88 16
34 H 0.09 2.59 8.10 -2.39 -0.02 2.57 16
35 H 0.08 2.52 8.10 -2.40 -0.02 2.50 16
36 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16
37 H 0.12 0.28 8.14 -2.39 -0.02 0.27 16
38 H 0.13 0.05 7.85 -2.38 -0.02 0.03 16
Total: -1.00 -88.14 340.05 5.10 -83.03
By element:
Atomic # 1 Polarization: 1.65 SS G_CDS: 1.02 Total: 2.67 kcal
Atomic # 6 Polarization: -1.86 SS G_CDS: 6.38 Total: 4.51 kcal
Atomic # 7 Polarization: -105.41 SS G_CDS: -2.89 Total: -108.30 kcal
Atomic # 8 Polarization: -28.93 SS G_CDS: -0.05 Total: -28.98 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal
Atomic # 16 Polarization: 1.86 SS G_CDS: -1.23 Total: 0.63 kcal
Total: -88.14 5.10 -83.03 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084408721.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 138.089 kcal
(2) G-P(sol) polarization free energy of solvation -88.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.952 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds