Wall clock time and date at job start Tue Mar 31 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47102 * 2 1 4 4 S 1.65593 * 120.00249 * 165.00379 * 3 2 1 5 5 O 1.42105 * 106.40078 * 317.91076 * 4 3 2 6 6 O 1.42104 * 106.40454 * 184.99780 * 4 3 2 7 7 N 1.65598 * 107.22188 * 71.45190 * 4 3 2 8 8 C 1.46497 * 120.00244 * 270.00248 * 7 4 3 9 9 C 1.50703 * 109.47124 * 265.00133 * 8 7 4 10 10 H 1.08004 * 119.99979 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99921 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00065 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47341 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47407 * 119.99828 * 13 11 9 16 16 H 1.48505 * 109.46625 * 239.99673 * 13 11 9 17 17 C 1.46504 * 119.99436 * 90.00261 * 7 4 3 18 18 C 1.50707 * 109.46935 * 95.00474 * 17 7 4 19 19 C 1.38227 * 119.62059 * 95.01845 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 274.99275 * 18 17 7 24 24 H 1.08993 * 109.47319 * 60.00826 * 1 2 3 25 25 H 1.09007 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47465 * 299.99872 * 1 2 3 27 27 H 1.08994 * 109.47102 * 239.99458 * 2 1 3 28 28 H 1.09003 * 109.47212 * 119.99228 * 2 1 3 29 29 H 0.97004 * 119.99855 * 344.99433 * 3 2 1 30 30 H 1.08999 * 109.47232 * 24.99515 * 8 7 4 31 31 H 1.08992 * 109.47302 * 145.00348 * 8 7 4 32 32 H 0.97010 * 119.99840 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47679 * 334.99942 * 17 7 4 34 34 H 1.09003 * 109.46652 * 214.99902 * 17 7 4 35 35 H 1.07998 * 120.41916 * 359.95342 * 19 18 17 36 36 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 37 37 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 38 38 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7002 0.3711 5 8 3.9294 0.8674 1.4745 6 8 3.7283 3.1151 0.4000 7 7 4.5184 1.1734 -0.9025 8 6 5.0266 -0.2005 -0.9204 9 6 6.4277 -0.2251 -0.3661 10 1 6.8933 0.6911 -0.0341 11 6 7.1157 -1.4171 -0.2839 12 7 6.5489 -2.5326 -0.6886 13 14 8.8523 -1.4477 0.4039 14 1 9.2575 -0.0713 0.7867 15 1 8.8958 -2.3275 1.5994 16 1 9.7842 -1.9686 -0.6283 17 6 4.8224 2.0815 -2.0112 18 6 6.1637 2.7279 -1.7777 19 6 7.2958 2.1782 -2.3494 20 6 8.5238 2.7837 -2.1328 21 6 8.5689 3.9188 -1.3375 22 6 7.3951 4.4113 -0.7998 23 7 6.2434 3.8116 -1.0309 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.4149 2.1089 -0.2175 30 1 4.3832 -0.8339 -0.3097 31 1 5.0347 -0.5715 -1.9452 32 1 7.0329 -3.3714 -0.6303 33 1 4.0535 2.8516 -2.0715 34 1 4.8476 1.5193 -2.9447 35 1 7.2240 1.2902 -2.9599 36 1 9.4247 2.3786 -2.5697 37 1 9.5089 4.4144 -1.1446 38 1 7.4212 5.2973 -0.1828 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172455330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:55 Heat of formation + Delta-G solvation = -65.042511 kcal Electronic energy + Delta-G solvation = -23308.524125 eV Core-core repulsion = 19890.848134 eV Total energy + Delta-G solvation = -3417.675991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95538 -38.18953 -37.37844 -36.75767 -36.66720 -34.63241 -33.21587 -32.33750 -30.54713 -29.38557 -26.94720 -24.50455 -24.14076 -23.68757 -22.79049 -20.41594 -18.98385 -18.47728 -18.07129 -17.68947 -17.29605 -16.88671 -16.61375 -16.29810 -15.87231 -15.62035 -15.14189 -14.73470 -14.48543 -14.09384 -14.03659 -13.99677 -13.73193 -13.21065 -13.18149 -13.03407 -12.90680 -12.71810 -12.63074 -12.51779 -12.45687 -12.38768 -12.26207 -11.86603 -11.73457 -10.64527 -10.57934 -10.43321 -10.31222 -9.87875 -9.67480 -8.16216 -6.22661 -0.28854 0.34688 0.54414 1.33355 1.38331 1.47819 2.14002 2.41179 2.71885 3.06759 3.16523 3.48559 3.57861 3.90549 4.06222 4.12677 4.16970 4.29090 4.36199 4.43295 4.51136 4.63531 4.66340 4.83749 4.89216 4.99409 5.10578 5.16945 5.23210 5.33038 5.34863 5.41035 5.51945 5.72687 5.89356 5.94989 6.17459 6.26230 6.83149 7.24835 7.43807 8.91625 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.007923 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.158151 B = 3533.342540 C = 5097.284288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.104 3.896 3 N -1.116 6.116 4 S 2.787 3.213 5 O -1.016 7.016 6 O -0.988 6.988 7 N -0.988 5.988 8 C 0.270 3.730 9 C -0.519 4.519 10 H 0.041 0.959 11 C 0.020 3.980 12 N -0.920 5.920 13 Si 0.938 3.062 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.180 3.820 18 C 0.093 3.907 19 C -0.139 4.139 20 C -0.094 4.094 21 C -0.172 4.172 22 C 0.067 3.933 23 N -0.492 5.492 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.423 0.577 30 H 0.018 0.982 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 8.452 -5.888 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 N -0.881 5.881 4 S 2.795 3.205 5 O -1.000 7.000 6 O -0.972 6.972 7 N -0.828 5.828 8 C 0.147 3.853 9 C -0.558 4.558 10 H 0.060 0.940 11 C -0.179 4.179 12 N -0.561 5.561 13 Si 0.764 3.236 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.192 1.192 17 C 0.054 3.946 18 C -0.047 4.047 19 C -0.159 4.159 20 C -0.120 4.120 21 C -0.191 4.191 22 C -0.090 4.090 23 N -0.202 5.202 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.259 0.741 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.180 0.820 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.992 8.829 -4.699 11.659 hybrid contribution 1.546 -0.651 -0.058 1.679 sum -4.445 8.177 -4.758 10.453 Atomic orbital electron populations 1.21929 0.91454 1.03996 1.03338 1.21375 0.98225 0.80906 1.01645 1.55804 1.28826 1.15209 1.88227 1.01606 0.73361 0.72128 0.73433 1.93548 1.83872 1.70641 1.51928 1.93598 1.86270 1.30369 1.86949 1.57671 1.65513 1.21535 1.38087 1.18725 0.93071 0.76116 0.97424 1.21617 1.00392 0.93054 1.40763 0.94044 1.25485 1.01228 0.95335 0.95884 1.69981 1.38642 0.98802 1.48656 0.85815 0.81522 0.77745 0.78514 1.20234 1.21218 1.19189 1.20125 0.92202 0.91607 0.90661 1.21848 0.97456 0.91765 0.93595 1.22091 0.93384 0.99668 1.00790 1.21909 0.98358 0.94921 0.96784 1.22427 1.00572 0.97649 0.98486 1.23168 0.88017 0.99745 0.98039 1.67584 1.30054 1.09471 1.13125 0.90416 0.89741 0.91712 0.91488 0.92634 0.74071 0.96363 0.94457 0.92632 0.88355 0.87054 0.84539 0.82864 0.81970 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 10.05 71.98 0.72 -1.97 16 2 C 0.10 2.85 6.93 86.38 0.60 3.44 16 3 N -1.12 -32.59 6.06 -187.50 -1.14 -33.73 16 4 S 2.79 113.79 6.12 -56.49 -0.35 113.45 16 5 O -1.02 -51.39 16.37 -128.00 -2.10 -53.48 16 6 O -0.99 -42.54 16.66 -128.00 -2.13 -44.67 16 7 N -0.99 -40.38 2.84 -523.91 -1.49 -41.87 16 8 C 0.27 13.03 5.12 85.63 0.44 13.46 16 9 C -0.52 -28.29 8.27 25.60 0.21 -28.08 16 10 H 0.04 2.38 7.03 -2.91 -0.02 2.36 16 11 C 0.02 1.10 5.46 84.65 0.46 1.56 16 12 N -0.92 -52.14 13.29 21.44 0.28 -51.85 16 13 Si 0.94 44.38 29.54 68.60 2.03 46.40 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 C 0.18 6.26 5.68 85.63 0.49 6.74 16 18 C 0.09 3.51 5.58 42.55 0.24 3.75 16 19 C -0.14 -4.87 8.62 22.36 0.19 -4.68 16 20 C -0.09 -2.85 10.18 22.47 0.23 -2.62 16 21 C -0.17 -4.85 10.11 22.36 0.23 -4.62 16 22 C 0.07 2.21 11.18 84.67 0.95 3.15 16 23 N -0.49 -19.35 9.82 -183.88 -1.81 -21.16 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.78 7.62 -2.39 -0.02 1.76 16 29 H 0.42 9.61 8.66 -96.75 -0.84 8.77 16 30 H 0.02 0.96 7.61 -2.39 -0.02 0.94 16 31 H 0.04 1.77 8.00 -2.39 -0.02 1.75 16 32 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 33 H 0.10 3.02 7.61 -2.39 -0.02 3.00 16 34 H 0.11 3.25 7.90 -2.39 -0.02 3.23 16 35 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -74.97 336.74 -1.71 -76.68 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.23 Total: 20.08 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.75 Total: -9.85 kcal Atomic # 7 Polarization: -144.46 SS G_CDS: -4.15 Total: -148.60 kcal Atomic # 8 Polarization: -93.93 SS G_CDS: -4.23 Total: -98.15 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 113.79 SS G_CDS: -0.35 Total: 113.45 kcal Total: -74.97 -1.71 -76.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172455330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.639 kcal (2) G-P(sol) polarization free energy of solvation -74.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds