Wall clock time and date at job start Tue Mar 31 2020 03:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31519 * 119.99989 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47077 * 89.99770 * 9 7 5 11 11 H 1.48500 * 109.46835 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99460 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 S 1.80998 * 109.47161 * 179.97438 * 17 16 14 19 19 C 1.76208 * 99.99885 * 179.97438 * 18 17 16 20 20 N 1.31543 * 126.45151 * 0.02761 * 19 18 17 21 21 N 1.28422 * 110.49866 * 179.97438 * 20 19 18 22 22 N 1.28910 * 110.34084 * 0.02562 * 21 20 19 23 23 N 1.35394 * 126.45009 * 179.70803 * 19 18 17 24 24 C 1.46498 * 127.38499 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 26 26 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 27 27 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 29 29 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 30 30 H 0.97002 * 119.99452 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 33 33 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 34 34 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 35 35 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 36 36 H 1.08997 * 109.47341 * 89.99374 * 24 23 19 37 37 H 1.09000 * 109.46816 * 209.99305 * 24 23 19 38 38 H 1.09000 * 109.47511 * 329.99053 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4541 0.8794 1.3356 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 16 -1.8684 4.6877 -4.0737 19 6 -3.4964 5.2139 -3.6522 20 7 -4.1049 5.0266 -2.5012 21 7 -5.2834 5.5362 -2.5273 22 7 -5.5126 6.0766 -3.6750 23 7 -4.3543 5.8925 -4.4502 24 6 -4.1254 6.3374 -5.8271 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8771 0.4810 2.1123 31 1 2.2719 2.1232 -1.9977 32 1 0.7225 4.1501 -2.8716 33 1 0.0680 2.6061 -3.4682 34 1 -2.0754 3.0670 -2.3098 35 1 -1.4210 4.6110 -1.7131 36 1 -4.4463 5.5585 -6.5187 37 1 -4.6959 7.2471 -6.0144 38 1 -3.0640 6.5378 -5.9726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183925040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:11 Heat of formation + Delta-G solvation = 77.775841 kcal Electronic energy + Delta-G solvation = -21428.725947 eV Core-core repulsion = 18049.535775 eV Total energy + Delta-G solvation = -3379.190172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.13936 -39.39980 -35.59531 -35.48410 -33.10263 -32.51083 -32.32154 -31.37137 -28.70039 -27.67603 -25.11995 -23.66768 -23.31645 -22.58241 -20.66230 -19.64688 -18.37090 -17.56283 -17.11072 -17.06325 -16.17863 -15.95107 -15.54864 -14.88761 -14.55115 -14.24059 -14.13847 -13.92430 -13.38278 -13.07652 -12.78791 -12.73669 -12.46926 -12.39231 -12.03222 -11.82889 -11.57414 -11.44554 -11.22729 -11.08693 -10.96563 -10.92635 -10.79137 -10.64450 -9.95627 -9.61247 -9.27860 -9.20049 -8.78778 -8.40488 -8.13315 -6.24352 -4.27230 0.33296 0.54884 1.50107 1.75677 1.94273 3.11556 3.21959 3.34352 3.39139 3.80087 3.89231 4.29080 4.39098 4.46771 4.53363 4.75480 4.78737 5.00471 5.04655 5.09470 5.16608 5.45890 5.52608 5.61141 5.79050 5.93854 6.00235 6.15260 6.62123 6.67766 6.80897 6.92285 7.21274 7.25707 7.47236 8.08822 8.11639 8.46345 8.71231 8.85711 9.36442 10.87609 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.034426 B = 0.002869 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.149888 B = 9756.230400 C =10186.090859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.698 5.698 14 C 0.508 3.492 15 O -0.543 6.543 16 C -0.132 4.132 17 C -0.087 4.087 18 S 0.028 5.972 19 C 0.216 3.784 20 N -0.326 5.326 21 N -0.030 5.030 22 N -0.086 5.086 23 N -0.369 5.369 24 C 0.087 3.913 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.268 0.732 31 H 0.396 0.604 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 8.164 -17.224 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.346 5.346 14 C 0.291 3.709 15 O -0.422 6.422 16 C -0.175 4.175 17 C -0.236 4.236 18 S 0.254 5.746 19 C -0.169 4.169 20 N -0.182 5.182 21 N -0.026 5.026 22 N -0.073 5.073 23 N -0.168 5.168 24 C -0.055 4.055 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.623 8.368 -16.575 23.634 hybrid contribution -0.179 -0.561 0.632 0.864 sum -14.802 7.807 -15.942 23.113 Atomic orbital electron populations 1.21878 0.96884 0.99090 1.02271 1.22291 0.94377 0.99936 1.01148 1.19169 0.95640 0.88516 0.82779 0.93211 1.21039 0.88585 1.39918 1.07872 0.90185 1.24834 0.94865 0.95119 0.97679 1.69868 1.08699 1.44430 1.29856 0.86909 0.81000 0.79971 0.80907 1.20231 1.22163 1.18394 1.46144 1.14679 1.55691 1.18104 1.20023 0.82829 0.79425 0.88629 1.90724 1.51375 1.59651 1.40451 1.21444 0.94884 1.02252 0.98875 1.23497 1.00162 1.04762 0.95213 1.85573 0.98737 1.68195 1.22115 1.27760 1.00717 0.97558 0.90840 1.75058 1.01928 1.23352 1.17870 1.77906 1.08071 1.05123 1.11497 1.82478 1.04161 1.21724 0.98986 1.51508 1.10332 1.40314 1.14656 1.22264 1.04684 1.02806 0.75734 0.92808 0.92970 0.94968 0.92289 0.92761 0.92250 0.77092 0.87966 0.88101 0.87045 0.86990 0.88722 0.87613 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.51 37.16 0.32 -2.47 16 2 C -0.14 -2.96 5.11 -26.73 -0.14 -3.10 16 3 C 0.24 5.46 1.83 -69.08 -0.13 5.33 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 5 C -0.54 -13.95 9.31 -34.44 -0.32 -14.27 16 6 H 0.08 2.18 7.98 -52.48 -0.42 1.76 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 9 Si 0.88 21.40 24.41 -169.99 -4.15 17.25 16 10 H -0.28 -6.48 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 13 N -0.70 -12.42 5.02 -54.93 -0.28 -12.69 16 14 C 0.51 8.25 6.40 -10.98 -0.07 8.18 16 15 O -0.54 -10.85 13.12 5.55 0.07 -10.77 16 16 C -0.13 -1.39 5.70 -27.88 -0.16 -1.55 16 17 C -0.09 -0.96 4.52 37.16 0.17 -0.79 16 18 S 0.03 0.23 21.79 -107.50 -2.34 -2.11 16 19 C 0.22 2.44 8.15 -89.18 -0.73 1.71 16 20 N -0.33 -4.76 11.57 30.50 0.35 -4.41 16 21 N -0.03 -0.45 13.38 60.35 0.81 0.35 16 22 N -0.09 -1.11 13.93 60.35 0.84 -0.27 16 23 N -0.37 -3.60 4.09 -68.10 -0.28 -3.88 16 24 C 0.09 0.35 11.40 59.85 0.68 1.03 16 25 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 26 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.24 3.21 -51.93 -0.17 1.07 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.40 6.03 8.54 -40.82 -0.35 5.69 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.38 8.10 -51.91 -0.42 0.96 16 35 H 0.11 1.41 8.10 -51.92 -0.42 0.99 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.23 7.85 -51.93 -0.41 -0.18 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -33.69 329.19 -4.66 -38.35 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.95 Total: 2.25 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.47 Total: -3.87 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 2.22 Total: -46.06 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.15 Total: 17.25 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.34 Total: -2.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.69 -4.66 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183925040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.121 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds