Wall clock time and date at job start Tue Mar 31 2020 03:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31519 * 119.99989 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47077 * 89.99770 * 9 7 5 11 11 H 1.48500 * 109.46835 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99460 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 S 1.80998 * 109.47161 * 179.97438 * 17 16 14 19 19 C 1.76208 * 99.99885 * 179.97438 * 18 17 16 20 20 N 1.31543 * 126.45151 * 0.02761 * 19 18 17 21 21 N 1.28422 * 110.49866 * 179.97438 * 20 19 18 22 22 N 1.28910 * 110.34084 * 0.02562 * 21 20 19 23 23 N 1.35394 * 126.45009 * 179.70803 * 19 18 17 24 24 C 1.46498 * 127.38499 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 26 26 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 27 27 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 29 29 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 30 30 H 0.97002 * 119.99452 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 33 33 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 34 34 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 35 35 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 36 36 H 1.08997 * 109.47341 * 89.99374 * 24 23 19 37 37 H 1.09000 * 109.46816 * 209.99305 * 24 23 19 38 38 H 1.09000 * 109.47511 * 329.99053 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4541 0.8794 1.3356 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 16 -1.8684 4.6877 -4.0737 19 6 -3.4964 5.2139 -3.6522 20 7 -4.1049 5.0266 -2.5012 21 7 -5.2834 5.5362 -2.5273 22 7 -5.5126 6.0766 -3.6750 23 7 -4.3543 5.8925 -4.4502 24 6 -4.1254 6.3374 -5.8271 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8771 0.4810 2.1123 31 1 2.2719 2.1232 -1.9977 32 1 0.7225 4.1501 -2.8716 33 1 0.0680 2.6061 -3.4682 34 1 -2.0754 3.0670 -2.3098 35 1 -1.4210 4.6110 -1.7131 36 1 -4.4463 5.5585 -6.5187 37 1 -4.6959 7.2471 -6.0144 38 1 -3.0640 6.5378 -5.9726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183925040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:11 Heat of formation + Delta-G solvation = 51.971810 kcal Electronic energy + Delta-G solvation = -21429.844893 eV Core-core repulsion = 18049.535775 eV Total energy + Delta-G solvation = -3380.309118 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.02391 -40.79879 -37.19624 -36.25755 -34.38324 -34.13464 -33.41928 -32.83763 -29.48804 -29.25077 -26.19231 -24.68525 -24.36238 -24.07178 -22.18531 -21.13166 -19.21567 -19.05266 -17.93247 -17.88511 -17.72441 -17.47293 -16.82655 -16.23792 -15.61079 -15.50110 -15.05683 -14.88245 -14.69833 -14.48056 -14.02630 -13.82578 -13.68452 -13.61174 -13.41940 -13.13501 -12.93314 -12.74843 -12.56361 -12.37154 -12.30555 -12.05793 -11.83898 -11.80900 -11.54024 -11.36098 -11.20060 -10.84652 -10.64812 -9.71121 -9.09262 -8.36689 -6.41089 -0.42895 -0.29246 0.67143 0.98352 1.12406 1.27429 1.36430 1.45464 1.84653 2.26970 2.59613 2.99878 3.11379 3.57418 3.72475 3.91222 4.06158 4.08471 4.24959 4.27774 4.35840 4.47074 4.48084 4.57798 4.59363 4.70374 4.89118 4.93466 4.98455 5.05218 5.16285 5.26251 5.45082 5.55677 5.72001 6.17287 6.62180 6.95164 7.19579 7.22748 7.55037 8.78341 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.034426 B = 0.002869 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.149888 B = 9756.230400 C =10186.090859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.020 0.980 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.262 1.262 13 N -0.699 5.699 14 C 0.505 3.495 15 O -0.583 6.583 16 C -0.117 4.117 17 C -0.100 4.100 18 S 0.114 5.886 19 C 0.200 3.800 20 N -0.363 5.363 21 N -0.064 5.064 22 N -0.098 5.098 23 N -0.356 5.356 24 C 0.070 3.930 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.269 0.731 31 H 0.410 0.590 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.347 8.246 -20.063 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.038 0.962 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.761 3.239 10 H -0.187 1.187 11 H -0.224 1.224 12 H -0.187 1.187 13 N -0.349 5.349 14 C 0.291 3.709 15 O -0.464 6.464 16 C -0.158 4.158 17 C -0.250 4.250 18 S 0.340 5.660 19 C -0.185 4.185 20 N -0.221 5.221 21 N -0.060 5.060 22 N -0.086 5.086 23 N -0.156 5.156 24 C -0.069 4.069 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.245 0.755 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.261 8.466 -19.478 26.153 hybrid contribution 0.039 -0.479 1.346 1.429 sum -15.222 7.987 -18.133 24.986 Atomic orbital electron populations 1.21767 0.95264 1.00421 1.01680 1.22210 0.95744 0.98631 1.01014 1.18749 0.93060 0.89611 0.84224 0.96221 1.21319 0.90450 1.38156 1.06799 0.92122 1.25507 0.95613 0.96036 0.99806 1.69972 1.10180 1.46325 1.30840 0.86094 0.79335 0.79977 0.78523 1.18691 1.22413 1.18671 1.45955 1.15931 1.56030 1.16934 1.20948 0.81458 0.78354 0.90180 1.90718 1.52326 1.60828 1.42521 1.21388 0.94836 1.03465 0.96135 1.23388 1.00317 1.04209 0.97082 1.85170 0.95864 1.66697 1.18264 1.28255 1.02081 0.97656 0.90459 1.74935 1.02344 1.24720 1.20064 1.77869 1.08848 1.06539 1.12721 1.82338 1.05677 1.21660 0.98924 1.51818 1.08922 1.39063 1.15815 1.22861 1.06679 1.04298 0.73077 0.94851 0.92161 0.92584 0.90984 0.94235 0.92185 0.75461 0.85104 0.84570 0.88679 0.89088 0.86474 0.85987 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.51 71.98 0.61 -4.38 16 2 C -0.14 -5.69 5.11 30.60 0.16 -5.53 16 3 C 0.25 11.12 1.83 44.24 0.08 11.20 16 4 H 0.02 1.02 6.64 -2.38 -0.02 1.00 16 5 C -0.53 -27.70 9.31 25.60 0.24 -27.46 16 6 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 7 C 0.03 1.66 5.45 84.65 0.46 2.13 16 8 N -0.93 -55.17 13.96 21.45 0.30 -54.88 16 9 Si 0.93 44.51 24.41 68.60 1.67 46.19 16 10 H -0.26 -11.75 6.83 99.48 0.68 -11.07 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.26 -12.50 6.53 99.48 0.65 -11.85 16 13 N -0.70 -23.90 5.02 -446.09 -2.24 -26.14 16 14 C 0.50 15.60 6.40 87.66 0.56 16.16 16 15 O -0.58 -23.17 13.12 -3.04 -0.04 -23.21 16 16 C -0.12 -2.07 5.70 29.85 0.17 -1.90 16 17 C -0.10 -2.01 4.52 71.98 0.33 -1.68 16 18 S 0.11 1.50 21.79 -56.49 -1.23 0.27 16 19 C 0.20 4.17 8.15 179.84 1.47 5.63 16 20 N -0.36 -10.62 11.57 -57.40 -0.66 -11.29 16 21 N -0.06 -1.96 13.38 37.02 0.50 -1.46 16 22 N -0.10 -2.47 13.93 37.02 0.52 -1.95 16 23 N -0.36 -6.25 4.09 -369.36 -1.51 -7.76 16 24 C 0.07 0.32 11.40 127.77 1.46 1.78 16 25 H 0.03 1.36 7.85 -2.38 -0.02 1.34 16 26 H 0.06 2.12 5.64 -2.39 -0.01 2.11 16 27 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.04 1.75 3.21 -2.39 -0.01 1.74 16 30 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.41 11.65 8.54 -92.71 -0.79 10.86 16 32 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 35 H 0.09 2.24 8.10 -2.40 -0.02 2.22 16 36 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.13 0.01 7.85 -2.39 -0.02 0.00 16 Total: -1.00 -76.64 329.19 3.05 -73.59 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.22 Total: 10.69 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 5.53 Total: -4.05 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -3.11 Total: -103.48 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.04 Total: -23.21 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.67 Total: 46.19 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.23 Total: 0.27 kcal Total: -76.64 3.05 -73.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183925040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.560 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds