Wall clock time and date at job start Tue Mar 31 2020 03:40:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86800 * 119.99918 * 2 1
4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1
5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1
6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1
7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1
9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1
10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2
11 11 H 1.08999 * 110.01651 * 326.38694 * 10 9 7
12 12 C 1.54260 * 110.03206 * 87.83511 * 10 9 7
13 13 C 1.54881 * 104.19720 * 95.67417 * 12 10 9
14 14 C 1.54889 * 102.75107 * 37.94025 * 13 12 10
15 15 C 1.53881 * 110.03050 * 205.00019 * 10 9 7
16 16 H 1.08996 * 110.03479 * 0.05173 * 15 10 9
17 17 C 1.50704 * 110.03138 * 121.43015 * 15 10 9
18 18 C 1.38255 * 119.99638 * 59.99948 * 17 15 10
19 19 C 1.38221 * 119.99734 * 179.97438 * 18 17 15
20 20 C 1.38257 * 119.99780 * 359.97438 * 19 18 17
21 21 C 1.38213 * 120.00195 * 0.02562 * 20 19 18
22 22 C 1.50696 * 119.99967 * 180.02562 * 21 20 19
23 23 F 1.39902 * 109.47469 * 359.97438 * 22 21 20
24 24 F 1.39905 * 109.47389 * 119.99793 * 22 21 20
25 25 F 1.39902 * 109.47043 * 239.99469 * 22 21 20
26 26 C 1.38213 * 119.99922 * 239.72370 * 17 15 10
27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3
28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2
29 29 H 1.08999 * 110.48510 * 214.35216 * 12 10 9
30 30 H 1.09000 * 110.48728 * 336.99505 * 12 10 9
31 31 H 1.09004 * 110.76068 * 279.62695 * 13 12 10
32 32 H 1.08998 * 110.91806 * 156.32978 * 13 12 10
33 33 H 1.09001 * 110.49093 * 203.37483 * 14 13 12
34 34 H 1.09005 * 110.48254 * 80.73741 * 14 13 12
35 35 H 1.07994 * 120.00733 * 0.02562 * 18 17 15
36 36 H 1.07993 * 119.99938 * 180.02562 * 19 18 17
37 37 H 1.07996 * 119.99893 * 180.02562 * 20 19 18
38 38 H 1.07996 * 120.00260 * 0.02562 * 26 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4476 2.6526 0.7001
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 1.4702 -2.1375 -0.0005
9 7 3.3795 -1.2022 0.0051
10 6 4.1120 -2.4709 0.0107
11 1 3.5576 -3.2194 0.5768
12 6 4.3348 -2.9588 -1.4357
13 6 5.7541 -2.4523 -1.7930
14 6 6.5299 -2.6445 -0.4663
15 6 5.5077 -2.2711 0.6271
16 1 5.6398 -1.2304 0.9229
17 6 5.6780 -3.1727 1.8226
18 6 5.5810 -4.5438 1.6738
19 6 5.7377 -5.3707 2.7701
20 6 5.9919 -4.8268 4.0155
21 6 6.0889 -3.4561 4.1643
22 6 6.3666 -2.8633 5.5216
23 9 6.4854 -3.8906 6.4638
24 9 7.5582 -2.1316 5.4761
25 9 5.3135 -2.0171 5.8853
26 6 5.9368 -2.6292 3.0668
27 1 -0.4851 0.8400 0.0004
28 1 3.8646 -0.3621 0.0055
29 1 4.2954 -4.0471 -1.4815
30 1 3.5938 -2.5208 -2.1044
31 1 5.7288 -1.4001 -2.0767
32 1 6.1936 -3.0546 -2.5881
33 1 7.3909 -1.9772 -0.4275
34 1 6.8450 -3.6821 -0.3556
35 1 5.3836 -4.9688 0.7008
36 1 5.6623 -6.4417 2.6538
37 1 6.1148 -5.4729 4.8721
38 1 6.0166 -1.5584 3.1823
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000241693839.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:40:37
Heat of formation + Delta-G solvation = -124.683315 kcal
Electronic energy + Delta-G solvation = -24381.328264 eV
Core-core repulsion = 20387.305705 eV
Total energy + Delta-G solvation = -3994.022559 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 299.119 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-50.19935 -47.73859 -47.63594 -39.98361 -37.71126 -33.72242 -32.15593 -31.65275
-30.93747 -27.60492 -26.96131 -26.09093 -23.22814 -22.39113 -21.89782 -20.15923
-19.43438 -18.51293 -18.40181 -18.24738 -17.21841 -16.39175 -15.78739 -15.10413
-14.76008 -14.56815 -14.38169 -14.32681 -14.12034 -14.09771 -13.83341 -13.81831
-13.57329 -13.15927 -12.86333 -12.66349 -12.64727 -12.14716 -11.84202 -11.41773
-11.31687 -10.96607 -10.78138 -10.65459 -10.58910 -10.48229 -10.34548 -10.00745
-9.61043 -9.22850 -9.00431 -8.72743 -7.26959 -5.78360 -3.13804 0.90891
1.23013 2.61943 3.35889 3.38390 3.44194 3.44484 3.67466 3.97358
4.39218 4.57466 4.63019 4.74756 4.91368 4.96042 5.03848 5.16738
5.31645 5.36498 5.52776 5.54996 5.58912 5.80271 5.85943 5.87373
5.95026 6.04520 6.06744 6.13129 6.22716 6.25716 6.39861 6.51789
6.65026 6.70982 6.76941 6.95558 7.98452 8.40823 9.19105 9.91670
10.11010 11.39979
Molecular weight = 299.12amu
Principal moments of inertia in cm(-1)
A = 0.013908 B = 0.004940 C = 0.004160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2012.718058 B = 5666.522359 C = 6729.360247
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.006 3.994
3 Si 0.882 3.118
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.277 1.277
7 C -0.243 4.243
8 H 0.090 0.910
9 N -0.743 5.743
10 C 0.189 3.811
11 H 0.060 0.940
12 C -0.146 4.146
13 C -0.122 4.122
14 C -0.114 4.114
15 C -0.070 4.070
16 H 0.083 0.917
17 C -0.054 4.054
18 C -0.082 4.082
19 C -0.120 4.120
20 C -0.085 4.085
21 C -0.182 4.182
22 C 0.508 3.492
23 F -0.181 7.181
24 F -0.179 7.179
25 F -0.174 7.174
26 C -0.066 4.066
27 H 0.259 0.741
28 H 0.360 0.640
29 H 0.053 0.947
30 H 0.077 0.923
31 H 0.064 0.936
32 H 0.058 0.942
33 H 0.061 0.939
34 H 0.066 0.934
35 H 0.133 0.867
36 H 0.132 0.868
37 H 0.133 0.867
38 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.842 -10.047 5.716 20.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.190 4.190
3 Si 0.713 3.287
4 H -0.211 1.211
5 H -0.218 1.218
6 H -0.204 1.204
7 C -0.373 4.373
8 H 0.108 0.892
9 N -0.386 5.386
10 C 0.079 3.921
11 H 0.078 0.922
12 C -0.186 4.186
13 C -0.159 4.159
14 C -0.152 4.152
15 C -0.089 4.089
16 H 0.102 0.898
17 C -0.054 4.054
18 C -0.100 4.100
19 C -0.138 4.138
20 C -0.103 4.103
21 C -0.184 4.184
22 C 0.454 3.546
23 F -0.162 7.162
24 F -0.161 7.161
25 F -0.156 7.156
26 C -0.085 4.085
27 H 0.069 0.931
28 H 0.193 0.807
29 H 0.072 0.928
30 H 0.095 0.905
31 H 0.083 0.917
32 H 0.077 0.923
33 H 0.080 0.920
34 H 0.085 0.915
35 H 0.151 0.849
36 H 0.150 0.850
37 H 0.151 0.849
38 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 16.576 -10.076 5.776 20.240
hybrid contribution 0.505 1.426 0.341 1.551
sum 17.081 -8.650 6.118 20.100
Atomic orbital electron populations
1.69694 1.05108 1.25821 1.57446 1.24659 0.95192 0.97133 1.02005
0.86582 0.79236 0.85149 0.77743 1.21088 1.21751 1.20372 1.19063
0.80537 0.94684 1.43002 0.89212 1.42858 1.03991 1.01751 1.89980
1.20863 0.88855 0.89446 0.92930 0.92206 1.23105 0.96353 0.99120
1.00061 1.22451 0.96218 1.01182 0.96073 1.22468 0.97081 1.01101
0.94510 1.21303 0.97262 0.98282 0.92078 0.89822 1.19885 0.97069
0.94175 0.94304 1.21292 0.96393 0.92976 0.99369 1.21107 1.00424
1.00230 0.91997 1.20910 0.97867 0.92938 0.98633 1.19891 1.10943
0.95675 0.91849 1.18354 0.74282 0.75959 0.85983 1.93144 1.95845
1.59219 1.67983 1.93205 1.47692 1.78422 1.96754 1.93245 1.57368
1.72081 1.92883 1.20829 0.96501 0.99864 0.91268 0.93054 0.80651
0.92814 0.90470 0.91680 0.92319 0.91979 0.91514 0.84894 0.85005
0.84875 0.85110
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16
2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16
3 Si 0.88 21.94 27.74 -169.99 -4.72 17.23 16
4 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16
5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16
6 H -0.28 -6.47 6.51 56.52 0.37 -6.10 16
7 C -0.24 -6.70 10.44 -15.06 -0.16 -6.86 16
8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16
9 N -0.74 -16.94 4.88 -52.34 -0.26 -17.19 16
10 C 0.19 3.41 3.00 -66.81 -0.20 3.21 16
11 H 0.06 1.16 7.25 -51.93 -0.38 0.78 16
12 C -0.15 -2.33 6.54 -25.08 -0.16 -2.49 16
13 C -0.12 -1.62 6.91 -24.74 -0.17 -1.79 16
14 C -0.11 -1.39 6.26 -25.08 -0.16 -1.55 16
15 C -0.07 -1.03 2.90 -90.65 -0.26 -1.29 16
16 H 0.08 1.31 7.39 -51.93 -0.38 0.93 16
17 C -0.05 -0.74 4.68 -104.62 -0.49 -1.23 16
18 C -0.08 -0.97 8.13 -39.58 -0.32 -1.29 16
19 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16
20 C -0.09 -0.95 9.43 -39.58 -0.37 -1.33 16
21 C -0.18 -2.35 5.37 -104.63 -0.56 -2.91 16
22 C 0.51 6.50 3.32 36.00 0.12 6.61 16
23 F -0.18 -2.16 15.97 2.25 0.04 -2.13 16
24 F -0.18 -2.30 17.23 2.25 0.04 -2.26 16
25 F -0.17 -2.49 17.24 2.25 0.04 -2.45 16
26 C -0.07 -0.92 9.23 -39.58 -0.37 -1.28 16
27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16
28 H 0.36 8.11 5.38 -40.82 -0.22 7.89 16
29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
30 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16
31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
34 H 0.07 0.72 6.86 -51.93 -0.36 0.36 16
35 H 0.13 1.38 7.73 -52.49 -0.41 0.98 16
36 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16
37 H 0.13 1.23 7.16 -52.49 -0.38 0.85 16
38 H 0.13 1.77 7.96 -52.49 -0.42 1.35 16
LS Contribution 324.27 15.07 4.89 4.89
Total: -1.00 -30.55 324.27 -7.45 -38.00
By element:
Atomic # 1 Polarization: 10.69 SS G_CDS: -4.66 Total: 6.03 kcal
Atomic # 6 Polarization: -10.17 SS G_CDS: -3.60 Total: -13.77 kcal
Atomic # 7 Polarization: -46.06 SS G_CDS: 0.52 Total: -45.54 kcal
Atomic # 9 Polarization: -6.96 SS G_CDS: 0.11 Total: -6.84 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.23 kcal
Total LS contribution 4.89 Total: 4.89 kcal
Total: -30.55 -7.45 -38.00 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000241693839.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -86.681 kcal
(2) G-P(sol) polarization free energy of solvation -30.551 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds