Wall clock time and date at job start Tue Mar 31 2020 03:40:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86800 * 119.99918 * 2 1
4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1
5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1
6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1
7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1
9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1
10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2
11 11 H 1.08999 * 110.01651 * 326.38694 * 10 9 7
12 12 C 1.54260 * 110.03206 * 87.83511 * 10 9 7
13 13 C 1.54881 * 104.19720 * 95.67417 * 12 10 9
14 14 C 1.54889 * 102.75107 * 37.94025 * 13 12 10
15 15 C 1.53881 * 110.03050 * 205.00019 * 10 9 7
16 16 H 1.08996 * 110.03479 * 0.05173 * 15 10 9
17 17 C 1.50704 * 110.03138 * 121.43015 * 15 10 9
18 18 C 1.38255 * 119.99638 * 59.99948 * 17 15 10
19 19 C 1.38221 * 119.99734 * 179.97438 * 18 17 15
20 20 C 1.38257 * 119.99780 * 359.97438 * 19 18 17
21 21 C 1.38213 * 120.00195 * 0.02562 * 20 19 18
22 22 C 1.50696 * 119.99967 * 180.02562 * 21 20 19
23 23 F 1.39902 * 109.47469 * 359.97438 * 22 21 20
24 24 F 1.39905 * 109.47389 * 119.99793 * 22 21 20
25 25 F 1.39902 * 109.47043 * 239.99469 * 22 21 20
26 26 C 1.38213 * 119.99922 * 239.72370 * 17 15 10
27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3
28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2
29 29 H 1.08999 * 110.48510 * 214.35216 * 12 10 9
30 30 H 1.09000 * 110.48728 * 336.99505 * 12 10 9
31 31 H 1.09004 * 110.76068 * 279.62695 * 13 12 10
32 32 H 1.08998 * 110.91806 * 156.32978 * 13 12 10
33 33 H 1.09001 * 110.49093 * 203.37483 * 14 13 12
34 34 H 1.09005 * 110.48254 * 80.73741 * 14 13 12
35 35 H 1.07994 * 120.00733 * 0.02562 * 18 17 15
36 36 H 1.07993 * 119.99938 * 180.02562 * 19 18 17
37 37 H 1.07996 * 119.99893 * 180.02562 * 20 19 18
38 38 H 1.07996 * 120.00260 * 0.02562 * 26 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4476 2.6526 0.7001
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 1.4702 -2.1375 -0.0005
9 7 3.3795 -1.2022 0.0051
10 6 4.1120 -2.4709 0.0107
11 1 3.5576 -3.2194 0.5768
12 6 4.3348 -2.9588 -1.4357
13 6 5.7541 -2.4523 -1.7930
14 6 6.5299 -2.6445 -0.4663
15 6 5.5077 -2.2711 0.6271
16 1 5.6398 -1.2304 0.9229
17 6 5.6780 -3.1727 1.8226
18 6 5.5810 -4.5438 1.6738
19 6 5.7377 -5.3707 2.7701
20 6 5.9919 -4.8268 4.0155
21 6 6.0889 -3.4561 4.1643
22 6 6.3666 -2.8633 5.5216
23 9 6.4854 -3.8906 6.4638
24 9 7.5582 -2.1316 5.4761
25 9 5.3135 -2.0171 5.8853
26 6 5.9368 -2.6292 3.0668
27 1 -0.4851 0.8400 0.0004
28 1 3.8646 -0.3621 0.0055
29 1 4.2954 -4.0471 -1.4815
30 1 3.5938 -2.5208 -2.1044
31 1 5.7288 -1.4001 -2.0767
32 1 6.1936 -3.0546 -2.5881
33 1 7.3909 -1.9772 -0.4275
34 1 6.8450 -3.6821 -0.3556
35 1 5.3836 -4.9688 0.7008
36 1 5.6623 -6.4417 2.6538
37 1 6.1148 -5.4729 4.8721
38 1 6.0166 -1.5584 3.1823
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000241693839.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:40:37
Heat of formation + Delta-G solvation = -140.982943 kcal
Electronic energy + Delta-G solvation = -24382.035069 eV
Core-core repulsion = 20387.305705 eV
Total energy + Delta-G solvation = -3994.729364 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 299.119 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-51.21741 -48.73391 -48.68814 -41.01815 -38.90888 -35.57475 -33.25801 -32.85284
-32.58785 -28.75758 -28.42091 -27.06632 -25.01902 -23.37236 -23.03093 -21.30281
-20.86114 -19.78098 -19.54040 -19.40853 -18.67700 -17.38361 -17.02969 -16.38035
-16.14565 -15.89372 -15.60597 -15.39259 -15.13044 -15.07591 -14.96075 -14.88084
-14.85099 -14.73397 -14.16087 -13.88098 -13.84850 -13.62166 -13.09994 -12.92217
-12.49675 -12.35102 -12.23756 -12.14967 -11.87649 -11.77006 -11.74537 -11.51697
-11.38280 -10.96759 -10.14242 -9.81328 -9.23358 -8.02004 -5.33878 -0.02993
0.29868 1.35621 1.38719 1.45742 1.62301 2.47687 2.50387 2.68783
2.98584 3.28904 3.38047 3.49176 3.71409 3.83516 3.91148 4.00297
4.17514 4.24803 4.33894 4.41236 4.57042 4.64885 4.76049 4.78619
4.90342 4.94230 4.97513 5.13176 5.19341 5.24009 5.34074 5.38450
5.47518 5.56377 5.61618 5.80379 5.85512 6.22825 7.09261 7.87094
8.04410 9.19830
Molecular weight = 299.12amu
Principal moments of inertia in cm(-1)
A = 0.013908 B = 0.004940 C = 0.004160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2012.718058 B = 5666.522359 C = 6729.360247
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.985 5.985
2 C -0.064 4.064
3 Si 0.950 3.050
4 H -0.277 1.277
5 H -0.299 1.299
6 H -0.254 1.254
7 C -0.223 4.223
8 H 0.056 0.944
9 N -0.748 5.748
10 C 0.180 3.820
11 H 0.042 0.958
12 C -0.142 4.142
13 C -0.115 4.115
14 C -0.103 4.103
15 C -0.062 4.062
16 H 0.070 0.930
17 C -0.071 4.071
18 C -0.085 4.085
19 C -0.112 4.112
20 C -0.084 4.084
21 C -0.194 4.194
22 C 0.510 3.490
23 F -0.175 7.175
24 F -0.181 7.181
25 F -0.187 7.187
26 C -0.085 4.085
27 H 0.256 0.744
28 H 0.363 0.637
29 H 0.077 0.923
30 H 0.043 0.957
31 H 0.053 0.947
32 H 0.086 0.914
33 H 0.077 0.923
34 H 0.088 0.912
35 H 0.149 0.851
36 H 0.167 0.833
37 H 0.155 0.845
38 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.653 -11.437 5.597 23.417
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.636 5.636
2 C -0.255 4.255
3 Si 0.778 3.222
4 H -0.204 1.204
5 H -0.226 1.226
6 H -0.178 1.178
7 C -0.354 4.354
8 H 0.074 0.926
9 N -0.391 5.391
10 C 0.072 3.928
11 H 0.061 0.939
12 C -0.182 4.182
13 C -0.153 4.153
14 C -0.140 4.140
15 C -0.081 4.081
16 H 0.089 0.911
17 C -0.071 4.071
18 C -0.102 4.102
19 C -0.129 4.129
20 C -0.102 4.102
21 C -0.195 4.195
22 C 0.456 3.544
23 F -0.156 7.156
24 F -0.162 7.162
25 F -0.168 7.168
26 C -0.104 4.104
27 H 0.065 0.935
28 H 0.197 0.803
29 H 0.096 0.904
30 H 0.062 0.938
31 H 0.072 0.928
32 H 0.104 0.896
33 H 0.096 0.904
34 H 0.107 0.893
35 H 0.167 0.833
36 H 0.185 0.815
37 H 0.172 0.828
38 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 19.456 -11.504 5.656 23.299
hybrid contribution -0.380 1.689 0.419 1.781
sum 19.076 -9.815 6.075 22.297
Atomic orbital electron populations
1.69876 1.07094 1.26485 1.60151 1.25442 0.96021 1.01015 1.03067
0.85479 0.78639 0.80038 0.78067 1.20360 1.22590 1.17827 1.19013
0.82701 0.93242 1.40457 0.92612 1.42881 1.02338 1.03817 1.90067
1.21133 0.90195 0.86949 0.94538 0.93943 1.22972 0.97427 1.00422
0.97401 1.22424 0.94409 1.00860 0.97588 1.22444 0.96468 1.02822
0.92315 1.21134 0.95575 0.98083 0.93334 0.91124 1.19859 0.98577
0.95012 0.93684 1.21542 0.95703 0.92247 1.00737 1.21505 0.98553
1.01857 0.91005 1.21261 0.96649 0.92371 0.99885 1.19976 1.11685
0.96516 0.91342 1.18376 0.73912 0.75845 0.86242 1.93150 1.95791
1.58834 1.67811 1.93199 1.47699 1.78532 1.96779 1.93218 1.58017
1.72574 1.93024 1.20863 0.97728 0.99816 0.91948 0.93495 0.80344
0.90438 0.93834 0.92847 0.89591 0.90447 0.89308 0.83287 0.81543
0.82771 0.85931
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -63.75 13.97 21.65 0.30 -63.45 16
2 C -0.06 -3.81 5.50 84.86 0.47 -3.35 16
3 Si 0.95 46.00 27.74 68.60 1.90 47.90 16
4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16
5 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16
6 H -0.25 -11.11 6.51 99.48 0.65 -10.46 16
7 C -0.22 -12.66 10.44 84.04 0.88 -11.79 16
8 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16
9 N -0.75 -34.25 4.88 -319.50 -1.56 -35.81 16
10 C 0.18 6.40 3.00 45.71 0.14 6.54 16
11 H 0.04 1.65 7.25 -2.39 -0.02 1.63 16
12 C -0.14 -4.35 6.54 31.66 0.21 -4.14 16
13 C -0.12 -2.74 6.91 31.88 0.22 -2.52 16
14 C -0.10 -2.17 6.26 31.67 0.20 -1.97 16
15 C -0.06 -1.73 2.90 -10.81 -0.03 -1.76 16
16 H 0.07 2.14 7.39 -2.39 -0.02 2.13 16
17 C -0.07 -1.83 4.68 -19.86 -0.09 -1.92 16
18 C -0.08 -1.74 8.13 22.27 0.18 -1.56 16
19 C -0.11 -1.92 10.05 22.27 0.22 -1.70 16
20 C -0.08 -1.63 9.43 22.27 0.21 -1.42 16
21 C -0.19 -4.71 5.37 -19.87 -0.11 -4.82 16
22 C 0.51 12.54 3.32 71.23 0.24 12.78 16
23 F -0.17 -3.90 15.97 44.97 0.72 -3.18 16
24 F -0.18 -4.48 17.23 44.97 0.78 -3.71 16
25 F -0.19 -5.30 17.24 44.97 0.78 -4.53 16
26 C -0.09 -2.29 9.23 22.27 0.21 -2.08 16
27 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16
28 H 0.36 16.12 5.38 -92.71 -0.50 15.62 16
29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
30 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16
31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
34 H 0.09 1.51 6.86 -2.38 -0.02 1.50 16
35 H 0.15 2.54 7.73 -2.91 -0.02 2.52 16
36 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16
37 H 0.15 2.31 7.16 -2.91 -0.02 2.29 16
38 H 0.12 3.35 7.96 -2.91 -0.02 3.33 16
Total: -1.00 -68.53 324.27 6.38 -62.15
By element:
Atomic # 1 Polarization: 19.80 SS G_CDS: 0.53 Total: 20.33 kcal
Atomic # 6 Polarization: -22.64 SS G_CDS: 2.93 Total: -19.71 kcal
Atomic # 7 Polarization: -98.00 SS G_CDS: -1.26 Total: -99.26 kcal
Atomic # 9 Polarization: -13.68 SS G_CDS: 2.27 Total: -11.41 kcal
Atomic # 14 Polarization: 46.00 SS G_CDS: 1.90 Total: 47.90 kcal
Total: -68.53 6.38 -62.15 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000241693839.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.834 kcal
(2) G-P(sol) polarization free energy of solvation -68.527 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.149 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds