Wall clock time and date at job start Tue Mar 31 2020 03:23:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 N 1.46501 * 109.46994 * 2 1
4 4 C 1.36930 * 120.00198 * 293.75653 * 3 2 1
5 5 H 1.08000 * 119.99930 * 149.38830 * 4 3 2
6 6 C 1.38817 * 120.00250 * 329.39605 * 4 3 2
7 7 N 1.31624 * 119.99899 * 337.58331 * 6 4 3
8 8 Si 1.86796 * 120.00425 * 157.58705 * 6 4 3
9 9 H 1.48510 * 109.47102 * 59.99611 * 8 6 4
10 10 H 1.48497 * 109.47283 * 179.97438 * 8 6 4
11 11 H 1.48493 * 109.47268 * 299.99918 * 8 6 4
12 12 S 1.65598 * 119.99536 * 113.76656 * 3 2 1
13 13 O 1.42100 * 106.40574 * 336.45025 * 12 3 2
14 14 O 1.42106 * 106.39816 * 203.53406 * 12 3 2
15 15 C 1.76196 * 107.22127 * 89.99820 * 12 3 2
16 16 C 1.38883 * 120.33972 * 89.99809 * 15 12 3
17 17 C 1.38293 * 118.50796 * 180.02562 * 16 15 12
18 18 C 1.39135 * 119.09816 * 359.97438 * 17 16 15
19 19 N 1.38998 * 119.70838 * 180.02562 * 18 17 16
20 20 C 1.46501 * 119.99879 * 4.98130 * 19 18 17
21 21 C 1.46499 * 120.00437 * 184.97722 * 19 18 17
22 22 N 1.32394 * 120.59025 * 359.97438 * 18 17 16
23 23 C 1.31974 * 121.61924 * 0.02562 * 22 18 17
24 24 H 1.08994 * 109.47299 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46678 * 300.00308 * 1 2 3
26 26 H 1.09002 * 109.46844 * 59.99782 * 1 2 3
27 27 H 1.09004 * 109.46678 * 239.99691 * 2 1 3
28 28 H 1.09002 * 109.46844 * 120.00218 * 2 1 3
29 29 H 0.96996 * 120.00008 * 180.02562 * 7 6 4
30 30 H 1.08004 * 120.74173 * 359.97438 * 16 15 12
31 31 H 1.08004 * 120.45052 * 180.02562 * 17 16 15
32 32 H 1.09001 * 109.47355 * 89.99804 * 20 19 18
33 33 H 1.09008 * 109.46845 * 210.00061 * 20 19 18
34 34 H 1.08999 * 109.47145 * 329.99697 * 20 19 18
35 35 H 1.09001 * 109.47292 * 89.99801 * 21 19 18
36 36 H 1.08996 * 109.47624 * 210.00053 * 21 19 18
37 37 H 1.09001 * 109.46878 * 330.00157 * 21 19 18
38 38 H 1.08002 * 119.57399 * 179.97438 * 23 22 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 1.7962 2.1860 -1.0853
5 1 1.6828 3.2519 -0.9531
6 6 1.7165 1.6319 -2.3556
7 7 2.2700 0.4629 -2.5996
8 14 0.8239 2.5452 -3.7188
9 1 1.4749 3.8613 -3.9417
10 1 0.8814 1.7470 -4.9697
11 1 -0.5937 2.7540 -3.3291
12 16 2.8393 1.9691 1.3126
13 8 2.4449 1.1735 2.4219
14 8 2.6918 3.3821 1.2781
15 6 4.5500 1.6409 1.0478
16 6 5.3495 2.5694 0.3939
17 6 6.6871 2.2726 0.2060
18 6 7.1839 1.0610 0.6761
19 7 8.5264 0.7499 0.4945
20 6 9.4348 1.7392 -0.0905
21 6 9.0330 -0.5671 0.8883
22 7 6.3895 0.2020 1.2958
23 6 5.1095 0.4588 1.4891
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 1.8933 -0.5139 -0.8900
28 1 1.8934 -0.5139 0.8900
29 1 2.2147 0.0759 -3.4873
30 1 4.9357 3.5019 0.0395
31 1 7.3374 2.9722 -0.2982
32 1 9.8708 2.3462 0.7029
33 1 10.2287 1.2267 -0.6340
34 1 8.8808 2.3806 -0.7759
35 1 8.9479 -1.2554 0.0474
36 1 10.0788 -0.4810 1.1828
37 1 8.4491 -0.9449 1.7276
38 1 4.4914 -0.2659 1.9984
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000279358769.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:23:42
Heat of formation + Delta-G solvation = -15.821711 kcal
Electronic energy + Delta-G solvation = -22969.137990 eV
Core-core repulsion = 19553.596373 eV
Total energy + Delta-G solvation = -3415.541617 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 299.109 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-39.80122 -36.33214 -36.07462 -35.81056 -34.39862 -32.04011 -31.79314 -30.13503
-29.21082 -28.21219 -25.22145 -24.85865 -22.89166 -21.52098 -21.37298 -18.45859
-17.64918 -17.01966 -16.50169 -16.32380 -15.94933 -15.23067 -14.85166 -14.45830
-14.34586 -14.00514 -13.48554 -13.16512 -12.89454 -12.82250 -12.63342 -12.39697
-12.20670 -12.12495 -11.99094 -11.89344 -11.25362 -10.96641 -10.93501 -10.72366
-10.68895 -10.51260 -10.23918 -10.04911 -9.88699 -9.75728 -9.33771 -9.30360
-8.95528 -7.88870 -7.46226 -6.48909 -4.08419 1.49266 1.81501 1.90491
3.01187 3.11992 3.15930 3.22115 3.98915 4.18032 4.55729 4.75278
4.78873 5.03262 5.14751 5.17967 5.24429 5.35778 5.46515 5.56025
5.62839 5.69916 5.86464 5.91561 6.13104 6.25164 6.29527 6.38814
6.43676 6.59309 6.72931 6.92482 6.99823 7.05383 7.23538 7.36283
7.52638 7.61193 8.31987 8.42012 8.73378 9.19216 10.41116
Molecular weight = 299.11amu
Principal moments of inertia in cm(-1)
A = 0.016610 B = 0.005627 C = 0.004984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1685.308338 B = 4974.617528 C = 5616.897647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.110 3.890
3 N -0.804 5.804
4 C -0.249 4.249
5 H 0.110 0.890
6 C 0.039 3.961
7 N -0.828 5.828
8 Si 0.921 3.079
9 H -0.268 1.268
10 H -0.282 1.282
11 H -0.268 1.268
12 S 2.555 3.445
13 O -1.005 7.005
14 O -0.987 6.987
15 C -0.756 4.756
16 C 0.060 3.940
17 C -0.262 4.262
18 C 0.420 3.580
19 N -0.621 5.621
20 C 0.096 3.904
21 C 0.100 3.900
22 N -0.558 5.558
23 C 0.232 3.768
24 H 0.045 0.955
25 H 0.043 0.957
26 H 0.060 0.940
27 H 0.105 0.895
28 H 0.057 0.943
29 H 0.274 0.726
30 H 0.142 0.858
31 H 0.130 0.870
32 H 0.050 0.950
33 H 0.069 0.931
34 H 0.072 0.928
35 H 0.045 0.955
36 H 0.059 0.941
37 H 0.080 0.920
38 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.829 -1.035 0.218 8.892
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.017 4.017
3 N -0.628 5.628
4 C -0.396 4.396
5 H 0.128 0.872
6 C -0.174 4.174
7 N -0.466 5.466
8 Si 0.746 3.254
9 H -0.193 1.193
10 H -0.208 1.208
11 H -0.193 1.193
12 S 2.654 3.346
13 O -0.995 6.995
14 O -0.977 6.977
15 C -0.839 4.839
16 C 0.034 3.966
17 C -0.287 4.287
18 C 0.186 3.814
19 N -0.336 5.336
20 C -0.047 4.047
21 C -0.043 4.043
22 N -0.276 5.276
23 C 0.072 3.928
24 H 0.064 0.936
25 H 0.062 0.938
26 H 0.079 0.921
27 H 0.122 0.878
28 H 0.075 0.925
29 H 0.084 0.916
30 H 0.160 0.840
31 H 0.148 0.852
32 H 0.068 0.932
33 H 0.087 0.913
34 H 0.091 0.909
35 H 0.064 0.936
36 H 0.078 0.922
37 H 0.098 0.902
38 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 9.263 -1.609 1.339 9.497
hybrid contribution 0.225 0.814 -1.436 1.666
sum 9.488 -0.795 -0.097 9.521
Atomic orbital electron populations
1.21886 0.97024 0.99762 1.01761 1.21439 0.93866 0.83259 1.03087
1.53756 1.54626 1.20210 1.34238 1.19714 1.41880 0.93273 0.84771
0.87246 1.25706 0.96624 0.96603 0.98502 1.69913 1.36969 1.17152
1.22563 0.86072 0.80483 0.79609 0.79211 1.19290 1.20753 1.19303
1.10059 0.73109 0.74476 0.76968 1.93339 1.81926 1.70463 1.53727
1.93341 1.85754 1.30954 1.87673 1.32808 1.31459 1.03965 1.15710
1.20977 0.91569 0.96711 0.87362 1.21409 0.97563 0.99090 1.10644
1.18412 0.84853 0.89392 0.88733 1.46207 1.04919 1.15501 1.66967
1.21681 0.93053 0.92052 0.97948 1.21530 0.98506 0.83455 1.00806
1.67142 1.06323 1.33519 1.20593 1.22036 0.89084 0.92733 0.88915
0.93581 0.93784 0.92117 0.87785 0.92478 0.91582 0.84020 0.85216
0.93186 0.91254 0.90895 0.93610 0.92234 0.90163 0.82125
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.87 9.96 37.16 0.37 -2.50 16
2 C 0.11 2.41 5.84 -4.04 -0.02 2.39 16
3 N -0.80 -19.09 2.98 -59.90 -0.18 -19.26 16
4 C -0.25 -6.07 8.67 -15.06 -0.13 -6.20 16
5 H 0.11 2.68 7.34 -52.49 -0.39 2.29 16
6 C 0.04 0.91 4.63 -17.43 -0.08 0.83 16
7 N -0.83 -19.87 11.06 55.49 0.61 -19.25 16
8 Si 0.92 18.38 29.61 -169.99 -5.03 13.34 16
9 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16
10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16
11 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16
12 S 2.55 60.40 5.64 -107.50 -0.61 59.80 16
13 O -1.00 -24.74 15.93 -57.17 -0.91 -25.65 16
14 O -0.99 -25.28 16.21 -57.17 -0.93 -26.20 16
15 C -0.76 -16.51 5.99 -39.42 -0.24 -16.75 16
16 C 0.06 1.22 9.64 -39.32 -0.38 0.84 16
17 C -0.26 -4.68 9.27 -39.23 -0.36 -5.05 16
18 C 0.42 7.61 7.37 -155.03 -1.14 6.46 16
19 N -0.62 -8.87 3.39 -189.67 -0.64 -9.51 16
20 C 0.10 0.98 10.28 59.85 0.62 1.60 16
21 C 0.10 1.20 10.50 59.85 0.63 1.83 16
22 N -0.56 -11.03 9.08 -12.44 -0.11 -11.15 16
23 C 0.23 4.81 10.68 -17.57 -0.19 4.62 16
24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16
25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16
26 H 0.06 1.24 7.41 -51.93 -0.38 0.85 16
27 H 0.10 2.41 5.52 -51.93 -0.29 2.12 16
28 H 0.06 1.19 7.03 -51.93 -0.37 0.82 16
29 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16
30 H 0.14 2.75 7.71 -52.48 -0.40 2.34 16
31 H 0.13 1.87 6.03 -52.48 -0.32 1.55 16
32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
33 H 0.07 0.55 8.07 -51.92 -0.42 0.13 16
34 H 0.07 0.74 5.98 -51.93 -0.31 0.42 16
35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
36 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16
37 H 0.08 1.07 7.30 -51.93 -0.38 0.69 16
38 H 0.16 3.11 7.62 -52.49 -0.40 2.71 16
LS Contribution 327.01 15.07 4.93 4.93
Total: -1.00 -30.32 327.01 -8.70 -39.02
By element:
Atomic # 1 Polarization: 10.75 SS G_CDS: -4.90 Total: 5.86 kcal
Atomic # 6 Polarization: -10.98 SS G_CDS: -0.93 Total: -11.91 kcal
Atomic # 7 Polarization: -58.86 SS G_CDS: -0.32 Total: -59.18 kcal
Atomic # 8 Polarization: -50.01 SS G_CDS: -1.84 Total: -51.85 kcal
Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.34 kcal
Atomic # 16 Polarization: 60.40 SS G_CDS: -0.61 Total: 59.80 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -30.32 -8.70 -39.02 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279358769.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.194 kcal
(2) G-P(sol) polarization free energy of solvation -30.319 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.822 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds