Wall clock time and date at job start Tue Mar 31 2020 03:23:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 N 1.46501 * 109.46994 * 2 1
4 4 C 1.36930 * 120.00198 * 293.75653 * 3 2 1
5 5 H 1.08000 * 119.99930 * 149.38830 * 4 3 2
6 6 C 1.38817 * 120.00250 * 329.39605 * 4 3 2
7 7 N 1.31624 * 119.99899 * 337.58331 * 6 4 3
8 8 Si 1.86796 * 120.00425 * 157.58705 * 6 4 3
9 9 H 1.48510 * 109.47102 * 59.99611 * 8 6 4
10 10 H 1.48497 * 109.47283 * 179.97438 * 8 6 4
11 11 H 1.48493 * 109.47268 * 299.99918 * 8 6 4
12 12 S 1.65598 * 119.99536 * 113.76656 * 3 2 1
13 13 O 1.42100 * 106.40574 * 336.45025 * 12 3 2
14 14 O 1.42106 * 106.39816 * 203.53406 * 12 3 2
15 15 C 1.76196 * 107.22127 * 89.99820 * 12 3 2
16 16 C 1.38883 * 120.33972 * 89.99809 * 15 12 3
17 17 C 1.38293 * 118.50796 * 180.02562 * 16 15 12
18 18 C 1.39135 * 119.09816 * 359.97438 * 17 16 15
19 19 N 1.38998 * 119.70838 * 180.02562 * 18 17 16
20 20 C 1.46501 * 119.99879 * 4.98130 * 19 18 17
21 21 C 1.46499 * 120.00437 * 184.97722 * 19 18 17
22 22 N 1.32394 * 120.59025 * 359.97438 * 18 17 16
23 23 C 1.31974 * 121.61924 * 0.02562 * 22 18 17
24 24 H 1.08994 * 109.47299 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46678 * 300.00308 * 1 2 3
26 26 H 1.09002 * 109.46844 * 59.99782 * 1 2 3
27 27 H 1.09004 * 109.46678 * 239.99691 * 2 1 3
28 28 H 1.09002 * 109.46844 * 120.00218 * 2 1 3
29 29 H 0.96996 * 120.00008 * 180.02562 * 7 6 4
30 30 H 1.08004 * 120.74173 * 359.97438 * 16 15 12
31 31 H 1.08004 * 120.45052 * 180.02562 * 17 16 15
32 32 H 1.09001 * 109.47355 * 89.99804 * 20 19 18
33 33 H 1.09008 * 109.46845 * 210.00061 * 20 19 18
34 34 H 1.08999 * 109.47145 * 329.99697 * 20 19 18
35 35 H 1.09001 * 109.47292 * 89.99801 * 21 19 18
36 36 H 1.08996 * 109.47624 * 210.00053 * 21 19 18
37 37 H 1.09001 * 109.46878 * 330.00157 * 21 19 18
38 38 H 1.08002 * 119.57399 * 179.97438 * 23 22 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 1.7962 2.1860 -1.0853
5 1 1.6828 3.2519 -0.9531
6 6 1.7165 1.6319 -2.3556
7 7 2.2700 0.4629 -2.5996
8 14 0.8239 2.5452 -3.7188
9 1 1.4749 3.8613 -3.9417
10 1 0.8814 1.7470 -4.9697
11 1 -0.5937 2.7540 -3.3291
12 16 2.8393 1.9691 1.3126
13 8 2.4449 1.1735 2.4219
14 8 2.6918 3.3821 1.2781
15 6 4.5500 1.6409 1.0478
16 6 5.3495 2.5694 0.3939
17 6 6.6871 2.2726 0.2060
18 6 7.1839 1.0610 0.6761
19 7 8.5264 0.7499 0.4945
20 6 9.4348 1.7392 -0.0905
21 6 9.0330 -0.5671 0.8883
22 7 6.3895 0.2020 1.2958
23 6 5.1095 0.4588 1.4891
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 1.8933 -0.5139 -0.8900
28 1 1.8934 -0.5139 0.8900
29 1 2.2147 0.0759 -3.4873
30 1 4.9357 3.5019 0.0395
31 1 7.3374 2.9722 -0.2982
32 1 9.8708 2.3462 0.7029
33 1 10.2287 1.2267 -0.6340
34 1 8.8808 2.3806 -0.7759
35 1 8.9479 -1.2554 0.0474
36 1 10.0788 -0.4810 1.1828
37 1 8.4491 -0.9449 1.7276
38 1 4.4914 -0.2659 1.9984
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000279358769.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:23:41
Heat of formation + Delta-G solvation = -35.503244 kcal
Electronic energy + Delta-G solvation = -22969.991445 eV
Core-core repulsion = 19553.596373 eV
Total energy + Delta-G solvation = -3416.395072 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 299.109 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.22445 -37.86214 -37.73642 -37.52459 -36.34910 -33.58247 -33.52401 -31.54318
-30.92119 -29.15782 -26.71089 -26.39734 -24.37175 -23.24229 -22.70411 -20.26201
-19.24518 -18.59526 -18.26788 -17.75545 -17.64466 -16.60950 -16.31753 -16.05266
-15.78823 -15.30288 -15.18141 -14.68150 -14.40468 -14.33959 -14.02743 -13.88547
-13.67408 -13.43628 -13.07815 -13.04423 -12.88560 -12.70839 -12.63992 -12.59305
-12.54885 -12.14888 -11.95740 -11.72536 -11.51593 -11.29082 -11.09229 -10.76775
-10.50093 -9.67144 -8.73223 -8.25913 -5.94097 -0.10072 0.12921 0.31676
1.52499 1.56371 1.64413 1.88716 2.32119 2.59982 2.82730 2.99874
3.31875 3.44703 3.72990 3.87132 4.10007 4.25188 4.34018 4.40960
4.43526 4.48148 4.70471 4.74340 4.76034 4.79900 4.82467 4.89973
4.92255 5.05138 5.09449 5.32404 5.44111 5.48282 5.67398 5.85270
5.91166 6.21776 6.50025 6.92294 6.96542 7.37942 8.64623
Molecular weight = 299.11amu
Principal moments of inertia in cm(-1)
A = 0.016610 B = 0.005627 C = 0.004984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1685.308338 B = 4974.617528 C = 5616.897647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.105 3.895
3 N -0.813 5.813
4 C -0.275 4.275
5 H 0.099 0.901
6 C 0.013 3.987
7 N -0.849 5.849
8 Si 0.976 3.024
9 H -0.266 1.266
10 H -0.276 1.276
11 H -0.265 1.265
12 S 2.569 3.431
13 O -1.021 7.021
14 O -1.013 7.013
15 C -0.781 4.781
16 C 0.042 3.958
17 C -0.257 4.257
18 C 0.413 3.587
19 N -0.616 5.616
20 C 0.085 3.915
21 C 0.095 3.905
22 N -0.569 5.569
23 C 0.224 3.776
24 H 0.075 0.925
25 H 0.041 0.959
26 H 0.050 0.950
27 H 0.094 0.906
28 H 0.062 0.938
29 H 0.278 0.722
30 H 0.142 0.858
31 H 0.166 0.834
32 H 0.066 0.934
33 H 0.098 0.902
34 H 0.075 0.925
35 H 0.050 0.950
36 H 0.096 0.904
37 H 0.062 0.938
38 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.699 -1.134 -0.782 10.787
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.021 4.021
3 N -0.638 5.638
4 C -0.421 4.421
5 H 0.117 0.883
6 C -0.198 4.198
7 N -0.488 5.488
8 Si 0.799 3.201
9 H -0.191 1.191
10 H -0.201 1.201
11 H -0.190 1.190
12 S 2.671 3.329
13 O -1.011 7.011
14 O -1.003 7.003
15 C -0.868 4.868
16 C 0.015 3.985
17 C -0.282 4.282
18 C 0.177 3.823
19 N -0.328 5.328
20 C -0.056 4.056
21 C -0.048 4.048
22 N -0.288 5.288
23 C 0.065 3.935
24 H 0.093 0.907
25 H 0.060 0.940
26 H 0.069 0.931
27 H 0.112 0.888
28 H 0.080 0.920
29 H 0.088 0.912
30 H 0.160 0.840
31 H 0.183 0.817
32 H 0.085 0.915
33 H 0.117 0.883
34 H 0.093 0.907
35 H 0.068 0.932
36 H 0.115 0.885
37 H 0.081 0.919
38 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 11.148 -1.711 0.325 11.284
hybrid contribution -0.096 0.790 -1.074 1.336
sum 11.053 -0.921 -0.749 11.116
Atomic orbital electron populations
1.21850 0.95444 1.01509 1.01140 1.21532 0.95278 0.82530 1.02741
1.53692 1.55498 1.20718 1.33941 1.19745 1.43759 0.93084 0.85540
0.88337 1.26307 0.96577 0.97156 0.99757 1.69981 1.37527 1.18075
1.23168 0.85238 0.79408 0.78586 0.76849 1.19083 1.20055 1.18989
1.09112 0.73608 0.73611 0.76528 1.93303 1.82719 1.70611 1.54453
1.93295 1.86571 1.32465 1.88013 1.32398 1.30439 1.05466 1.18512
1.21138 0.92847 0.96642 0.87827 1.21727 0.96902 0.99654 1.09912
1.18835 0.86443 0.89214 0.87841 1.46650 1.03707 1.16939 1.65527
1.22026 0.93005 0.91869 0.98720 1.21707 1.00197 0.82487 1.00389
1.67198 1.05924 1.34178 1.21467 1.22129 0.89879 0.92502 0.89033
0.90651 0.93975 0.93062 0.88845 0.92000 0.91221 0.84009 0.81651
0.91505 0.88303 0.90674 0.93155 0.88531 0.91907 0.81794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 27.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.52 9.96 71.98 0.72 -4.80 16
2 C 0.11 4.69 5.84 86.38 0.50 5.20 16
3 N -0.81 -39.56 2.98 -343.43 -1.02 -40.58 16
4 C -0.28 -13.68 8.67 84.04 0.73 -12.95 16
5 H 0.10 4.99 7.34 -2.91 -0.02 4.97 16
6 C 0.01 0.62 4.63 84.86 0.39 1.01 16
7 N -0.85 -40.87 11.06 21.65 0.24 -40.63 16
8 Si 0.98 37.32 29.61 68.60 2.03 39.35 16
9 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16
10 H -0.28 -10.17 7.11 99.48 0.71 -9.46 16
11 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16
12 S 2.57 125.03 5.64 -56.49 -0.32 124.71 16
13 O -1.02 -51.51 15.93 -128.00 -2.04 -53.55 16
14 O -1.01 -53.52 16.21 -128.00 -2.08 -55.60 16
15 C -0.78 -34.77 5.99 22.37 0.13 -34.63 16
16 C 0.04 1.70 9.64 22.44 0.22 1.92 16
17 C -0.26 -8.78 9.27 22.50 0.21 -8.57 16
18 C 0.41 14.27 7.37 133.07 0.98 15.25 16
19 N -0.62 -15.69 3.39 -753.98 -2.56 -18.25 16
20 C 0.09 1.39 10.28 127.77 1.31 2.70 16
21 C 0.09 2.00 10.50 127.77 1.34 3.34 16
22 N -0.57 -22.22 9.08 -193.27 -1.75 -23.97 16
23 C 0.22 9.46 10.68 84.62 0.90 10.36 16
24 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
26 H 0.05 2.09 7.41 -2.39 -0.02 2.07 16
27 H 0.09 4.40 5.52 -2.39 -0.01 4.38 16
28 H 0.06 2.63 7.03 -2.39 -0.02 2.62 16
29 H 0.28 12.50 8.31 -92.71 -0.77 11.73 16
30 H 0.14 5.61 7.71 -2.91 -0.02 5.58 16
31 H 0.17 4.28 6.03 -2.91 -0.02 4.27 16
32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
33 H 0.10 1.08 8.07 -2.38 -0.02 1.06 16
34 H 0.07 1.21 5.98 -2.39 -0.01 1.20 16
35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
36 H 0.10 1.34 8.07 -2.39 -0.02 1.32 16
37 H 0.06 1.57 7.30 -2.39 -0.02 1.55 16
38 H 0.16 6.54 7.62 -2.91 -0.02 6.52 16
Total: -1.00 -65.50 327.01 1.02 -64.48
By element:
Atomic # 1 Polarization: 24.15 SS G_CDS: 1.07 Total: 25.22 kcal
Atomic # 6 Polarization: -28.63 SS G_CDS: 7.44 Total: -21.19 kcal
Atomic # 7 Polarization: -118.34 SS G_CDS: -5.09 Total: -123.43 kcal
Atomic # 8 Polarization: -105.03 SS G_CDS: -4.11 Total: -109.15 kcal
Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal
Atomic # 16 Polarization: 125.03 SS G_CDS: -0.32 Total: 124.71 kcal
Total: -65.50 1.02 -64.48 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279358769.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.977 kcal
(2) G-P(sol) polarization free energy of solvation -65.495 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.519 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds