Wall clock time and date at job start Tue Mar 31 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47334 * 2 1 4 4 C 1.50704 * 109.46998 * 119.99777 * 2 1 3 5 5 H 1.08003 * 119.99999 * 119.99885 * 4 2 1 6 6 C 1.37877 * 119.99981 * 300.00078 * 4 2 1 7 7 N 1.31521 * 119.99728 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47003 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46878 * 120.00013 * 8 6 4 11 11 H 1.48497 * 109.47645 * 239.99988 * 8 6 4 12 12 N 1.46494 * 109.47135 * 239.99552 * 2 1 3 13 13 C 1.46505 * 120.00309 * 300.00240 * 12 2 1 14 14 S 1.65605 * 120.00164 * 120.00275 * 12 2 1 15 15 O 1.42096 * 106.40590 * 156.45914 * 14 12 2 16 16 O 1.42108 * 106.39755 * 23.53827 * 14 12 2 17 17 N 1.65597 * 107.21939 * 270.00117 * 14 12 2 18 18 C 1.46499 * 119.99926 * 64.71969 * 17 14 12 19 19 C 1.50700 * 109.46995 * 165.27893 * 18 17 14 20 20 C 1.38672 * 120.41584 * 269.71771 * 19 18 17 21 21 C 1.38628 * 118.41942 * 179.78496 * 20 19 18 22 22 C 1.38224 * 119.16037 * 0.51321 * 21 20 19 23 23 N 1.31855 * 120.76634 * 359.72801 * 22 21 20 24 24 C 1.31892 * 121.72314 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47334 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47308 * 300.00016 * 1 2 3 27 27 H 1.09002 * 109.46860 * 60.00586 * 1 2 3 28 28 H 0.97005 * 119.99396 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.46779 * 270.00149 * 13 12 2 30 30 H 1.09000 * 109.47139 * 29.99800 * 13 12 2 31 31 H 1.09001 * 109.47179 * 150.00293 * 13 12 2 32 32 H 0.97001 * 120.00224 * 245.00182 * 17 14 12 33 33 H 1.09007 * 109.47241 * 285.27714 * 18 17 14 34 34 H 1.08995 * 109.47308 * 45.27753 * 18 17 14 35 35 H 1.08003 * 120.79361 * 0.02562 * 20 19 18 36 36 H 1.08005 * 120.42287 * 180.22456 * 21 20 19 37 37 H 1.08007 * 119.62272 * 179.74977 * 22 21 20 38 38 H 1.07995 * 119.61823 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.1463 -2.2868 3.6040 10 1 3.1464 -0.1871 4.8165 11 1 1.1660 -1.5865 4.8162 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9705 0.1140 -2.2862 15 8 3.7119 -0.8791 -2.9813 16 8 3.5795 1.1828 -1.5748 17 7 1.9609 0.8088 -3.3998 18 6 1.0251 1.8574 -2.9864 19 6 0.4936 2.5657 -4.2058 20 6 1.1457 3.6810 -4.7098 21 6 0.6233 4.2977 -5.8361 22 6 -0.5279 3.7906 -6.4089 23 7 -1.1243 2.7307 -5.8994 24 6 -0.6525 2.1152 -4.8326 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.7086 1.1614 3.4844 29 1 2.4158 -2.7378 -0.9714 30 1 0.6904 -2.3003 -0.9845 31 1 1.6239 -2.2854 -2.5001 32 1 1.9862 0.5187 -4.3251 33 1 0.1972 1.4095 -2.4367 34 1 1.5410 2.5732 -2.3465 35 1 2.0413 4.0579 -4.2384 36 1 1.1071 5.1663 -6.2580 37 1 -0.9436 4.2677 -7.2842 38 1 -1.1686 1.2501 -4.4436 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330418638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:36 Heat of formation + Delta-G solvation = -38.169757 kcal Electronic energy + Delta-G solvation = -22700.520825 eV Core-core repulsion = 19284.010124 eV Total energy + Delta-G solvation = -3416.510701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32556 -36.75981 -36.21116 -35.58565 -35.25197 -32.60279 -32.42097 -31.22886 -29.13797 -26.05004 -25.62338 -25.16826 -23.71582 -22.13314 -20.82110 -18.89521 -17.52997 -17.24693 -16.89260 -16.50990 -16.27722 -16.07966 -15.07391 -14.90030 -14.35906 -13.94123 -13.74520 -13.43170 -13.26139 -13.19824 -12.99952 -12.80136 -12.20378 -11.97318 -11.76314 -11.52218 -11.44553 -11.34269 -11.23911 -10.99538 -10.82832 -10.46224 -10.30978 -10.05532 -9.99405 -9.62122 -9.35526 -9.27700 -9.23691 -8.48158 -8.00881 -6.10199 -4.16250 0.79891 1.08164 1.27727 3.26526 3.34961 3.38747 3.43843 3.72062 4.09164 4.25233 4.38507 4.58103 4.66312 4.82719 4.84582 5.01173 5.21304 5.24139 5.37913 5.53878 5.65281 5.66396 5.90772 5.95368 6.12929 6.14938 6.36017 6.50804 6.59949 6.72759 6.75963 6.94831 7.08720 7.44581 7.60179 7.75787 7.78391 8.00813 8.24507 8.86359 9.49889 10.95553 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.004398 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.200148 B = 6364.937131 C = 6888.306557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.265 3.735 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.779 3.221 15 O -0.995 6.995 16 O -0.973 6.973 17 N -1.131 6.131 18 C 0.161 3.839 19 C -0.142 4.142 20 C -0.059 4.059 21 C -0.175 4.175 22 C 0.097 3.903 23 N -0.487 5.487 24 C 0.114 3.886 25 H 0.035 0.965 26 H 0.094 0.906 27 H 0.012 0.988 28 H 0.263 0.737 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.409 0.591 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 4.075 -14.502 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.162 3.838 3 H 0.077 0.923 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.788 3.212 15 O -0.979 6.979 16 O -0.957 6.957 17 N -0.889 5.889 18 C 0.034 3.966 19 C -0.145 4.145 20 C -0.085 4.085 21 C -0.195 4.195 22 C -0.061 4.061 23 N -0.195 5.195 24 C -0.043 4.043 25 H 0.054 0.946 26 H 0.112 0.888 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.241 0.759 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.355 3.997 -14.537 15.445 hybrid contribution 0.629 -0.218 0.888 1.110 sum -2.726 3.779 -13.650 14.423 Atomic orbital electron populations 1.22189 0.98283 0.99893 1.00598 1.18768 0.91260 0.93036 0.80688 0.92297 1.21366 1.31489 1.12991 0.89997 0.91887 1.24901 0.94949 0.95006 0.99007 1.69861 1.36611 1.22751 1.23699 0.86444 0.78605 0.79691 0.82697 1.19742 1.20913 1.21000 1.57691 1.70051 1.19921 1.35643 1.21138 1.01690 0.81928 0.98818 1.01983 0.73548 0.73206 0.72466 1.93553 1.69515 1.60033 1.74817 1.93598 1.73781 1.55936 1.72337 1.56297 1.57020 1.51512 1.24103 1.20155 0.93474 0.89660 0.93275 1.20957 0.97305 0.97352 0.98910 1.21662 0.98734 0.93628 0.94506 1.22169 0.98163 1.01810 0.97381 1.22801 0.92331 0.92323 0.98608 1.67742 1.32164 1.08483 1.11145 1.22797 0.92687 0.98075 0.90783 0.94638 0.88774 0.96948 0.92753 0.93283 0.90942 0.93278 0.75859 0.89773 0.89146 0.84363 0.84693 0.82850 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.95 37.16 0.33 -2.85 16 2 C 0.27 6.17 2.62 -69.08 -0.18 5.99 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 4 C -0.52 -13.63 8.37 -34.44 -0.29 -13.92 16 5 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.10 11.32 55.43 0.63 -23.48 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.99 -19.62 3.12 -115.85 -0.36 -19.98 16 13 C 0.11 1.91 9.53 59.85 0.57 2.48 16 14 S 2.78 52.10 6.09 -107.50 -0.65 51.44 16 15 O -1.00 -20.15 17.21 -57.17 -0.98 -21.13 16 16 O -0.97 -21.75 16.19 -57.17 -0.93 -22.67 16 17 N -1.13 -15.78 6.05 -11.66 -0.07 -15.85 16 18 C 0.16 2.12 6.40 -5.19 -0.03 2.09 16 19 C -0.14 -1.63 5.29 -104.48 -0.55 -2.19 16 20 C -0.06 -0.61 9.86 -39.28 -0.39 -1.00 16 21 C -0.18 -1.56 10.11 -39.44 -0.40 -1.96 16 22 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 23 N -0.49 -5.77 10.36 -13.25 -0.14 -5.90 16 24 C 0.11 1.30 10.86 -17.55 -0.19 1.11 16 25 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 26 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 27 H 0.01 0.21 6.16 -51.93 -0.32 -0.11 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 31 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 32 H 0.41 4.84 8.64 -34.47 -0.30 4.54 16 33 H 0.08 1.10 6.11 -51.93 -0.32 0.78 16 34 H 0.09 1.28 7.71 -51.93 -0.40 0.88 16 35 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 36 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -32.26 328.49 -8.74 -41.00 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.74 Total: 3.73 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.42 Total: -7.92 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 0.06 Total: -65.20 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -1.91 Total: -43.81 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 52.10 SS G_CDS: -0.65 Total: 51.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.26 -8.74 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330418638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.828 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds