Wall clock time and date at job start Tue Mar 31 2020 03:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 117.00075 * 2 1 4 4 O 1.20834 * 119.99850 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00376 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.58176 * 350.09469 * 5 3 2 7 7 C 1.53194 * 109.58954 * 110.37798 * 5 3 2 8 8 C 1.53041 * 109.31540 * 174.42267 * 7 5 3 9 9 H 1.08999 * 109.45564 * 58.64087 * 8 7 5 10 10 C 1.50689 * 109.46105 * 178.61529 * 8 7 5 11 11 O 1.20833 * 120.00277 * 359.97438 * 10 8 7 12 12 O 1.34227 * 120.00202 * 180.27765 * 10 8 7 13 13 C 1.45205 * 117.00267 * 179.72340 * 12 10 8 14 14 C 1.53035 * 109.53677 * 298.63885 * 8 7 5 15 15 C 1.53193 * 109.31703 * 61.36641 * 14 8 7 16 16 N 1.46928 * 109.58906 * 229.67280 * 5 3 2 17 17 C 1.34774 * 120.62934 * 6.57722 * 16 5 3 18 18 O 1.21686 * 120.00137 * 5.27420 * 17 16 5 19 19 C 1.46376 * 120.00088 * 185.27519 * 17 16 5 20 20 H 1.08000 * 119.99890 * 9.56118 * 19 17 16 21 21 C 1.40048 * 120.00130 * 189.56041 * 19 17 16 22 22 N 1.30673 * 119.99651 * 354.11171 * 21 19 17 23 23 Si 1.86802 * 119.99897 * 174.11726 * 21 19 17 24 24 H 1.48501 * 109.47057 * 94.98834 * 23 21 19 25 25 H 1.48503 * 109.46609 * 214.98689 * 23 21 19 26 26 H 1.48500 * 109.47117 * 334.98581 * 23 21 19 27 27 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47080 * 299.99690 * 1 2 3 29 29 H 1.09004 * 109.46956 * 60.00465 * 1 2 3 30 30 H 1.09002 * 109.49377 * 54.47478 * 7 5 3 31 31 H 1.09000 * 109.49752 * 294.37696 * 7 5 3 32 32 H 1.09004 * 109.46936 * 179.97438 * 13 12 10 33 33 H 1.08993 * 109.47196 * 299.99971 * 13 12 10 34 34 H 1.08999 * 109.46663 * 60.00374 * 13 12 10 35 35 H 1.09000 * 109.49776 * 181.31235 * 14 8 7 36 36 H 1.08997 * 109.49891 * 301.41150 * 14 8 7 37 37 H 1.09000 * 109.59040 * 185.58128 * 15 14 8 38 38 H 1.08997 * 109.59210 * 65.14779 * 15 14 8 39 39 H 0.97000 * 119.99436 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9841 0.2837 0.1776 7 6 4.0534 1.8034 -1.3523 8 6 5.5685 2.0129 -1.2981 9 1 6.0570 1.0693 -1.0553 10 6 6.0561 2.5005 -2.6380 11 8 5.2726 2.6633 -3.5434 12 8 7.3616 2.7482 -2.8276 13 6 7.7605 3.2095 -4.1453 14 6 5.9035 3.0511 -0.2249 15 6 5.4375 2.5367 1.1408 16 7 4.0109 2.1955 1.0559 17 6 3.1268 2.7174 1.9290 18 8 1.9655 2.3545 1.9093 19 6 3.5635 3.7209 2.9010 20 1 4.5486 4.1566 2.8219 21 6 2.7040 4.1162 3.9337 22 7 1.4737 3.6769 3.9638 23 14 3.3164 5.2713 5.2679 24 1 2.9596 6.6689 4.9147 25 1 2.6844 4.9112 6.5626 26 1 4.7918 5.1520 5.3871 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 3.5626 2.7519 -1.5704 31 1 3.8137 1.0812 -2.1327 32 1 8.8383 3.3719 -4.1626 33 1 7.4939 2.4588 -4.8892 34 1 7.2489 4.1446 -4.3731 35 1 6.9806 3.2170 -0.2028 36 1 5.3953 3.9878 -0.4536 37 1 5.5834 3.3123 1.8927 38 1 6.0098 1.6496 1.4119 39 1 0.8785 3.9504 4.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331091048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:52 Heat of formation + Delta-G solvation = -182.390292 kcal Electronic energy + Delta-G solvation = -25774.491436 eV Core-core repulsion = 21876.681241 eV Total energy + Delta-G solvation = -3897.810195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76233 -39.84630 -38.07562 -36.64973 -35.81642 -35.21703 -32.64928 -32.08946 -31.24749 -28.06572 -27.31411 -26.57026 -25.18960 -23.54496 -21.84085 -20.93619 -20.16689 -18.78738 -17.70033 -17.19625 -16.67113 -16.39837 -16.17997 -15.83514 -15.44869 -15.13182 -14.54257 -14.24779 -14.01353 -13.75058 -13.57001 -13.33543 -12.81967 -12.61659 -12.46044 -12.29236 -12.17116 -11.68067 -11.43257 -11.40372 -11.24636 -11.07976 -10.91833 -10.88348 -10.77739 -10.62180 -10.43318 -10.26593 -9.97058 -9.82318 -9.26238 -8.83500 -7.53537 -7.26002 -6.20087 -4.66477 2.19626 2.62030 3.11965 3.15628 3.20791 3.23550 3.53898 4.04890 4.37499 4.56427 4.63816 4.85457 4.90365 4.96880 5.04619 5.23715 5.34468 5.40084 5.52092 5.61741 5.64417 5.72118 5.73340 5.87008 5.95344 5.98171 6.04751 6.17537 6.28465 6.32794 6.38676 6.55707 7.26439 7.39988 7.44061 7.72601 7.99964 8.22502 8.86667 9.00673 9.29944 10.52567 10.71355 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.005724 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.779644 B = 4890.116985 C = 6611.470161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.374 6.374 3 C 0.467 3.533 4 O -0.455 6.455 5 C 0.169 3.831 6 H 0.081 0.919 7 C -0.107 4.107 8 C -0.072 4.072 9 H 0.112 0.888 10 C 0.467 3.533 11 O -0.506 6.506 12 O -0.358 6.358 13 C 0.035 3.965 14 C -0.130 4.130 15 C 0.128 3.872 16 N -0.635 5.635 17 C 0.552 3.448 18 O -0.541 6.541 19 C -0.540 4.540 20 H 0.074 0.926 21 C 0.088 3.912 22 N -0.763 5.763 23 Si 0.907 3.093 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.263 1.263 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.008 -4.548 -9.686 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.292 6.292 3 C 0.307 3.693 4 O -0.337 6.337 5 C 0.063 3.937 6 H 0.099 0.901 7 C -0.146 4.146 8 C -0.091 4.091 9 H 0.130 0.870 10 C 0.310 3.690 11 O -0.393 6.393 12 O -0.274 6.274 13 C -0.059 4.059 14 C -0.168 4.168 15 C 0.004 3.996 16 N -0.377 5.377 17 C 0.358 3.642 18 O -0.422 6.422 19 C -0.576 4.576 20 H 0.092 0.908 21 C -0.132 4.132 22 N -0.392 5.392 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.204 1.204 26 H -0.188 1.188 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.673 -4.360 -9.883 14.500 hybrid contribution 0.188 0.714 0.388 0.834 sum 9.861 -3.646 -9.495 14.166 Atomic orbital electron populations 1.23005 0.77381 1.01974 1.02412 1.86346 1.22668 1.34385 1.85820 1.22540 0.90705 0.81579 0.74440 1.90704 1.66295 1.35718 1.40966 1.20112 0.88665 0.95435 0.89519 0.90111 1.21754 0.92849 1.03854 0.96108 1.21025 0.97048 1.01680 0.89351 0.87020 1.23919 0.80187 0.73939 0.90925 1.90668 1.55951 1.48262 1.44460 1.86517 1.27441 1.77578 1.35912 1.23240 1.00965 0.99887 0.81833 1.22055 1.01900 0.97993 0.94877 1.21491 0.81855 1.00508 0.95723 1.48384 1.07833 1.49824 1.31696 1.18334 0.84042 0.82136 0.79666 1.90724 1.17736 1.63113 1.70652 1.20855 1.01796 1.23321 1.11642 0.90832 1.25712 0.94058 0.95379 0.98082 1.70031 1.04507 1.35908 1.28735 0.86375 0.79754 0.80544 0.80217 1.19863 1.20445 1.18751 0.89442 0.91577 0.93040 0.89663 0.90239 0.88214 0.92061 0.91964 0.89961 0.90725 0.87569 0.92931 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 10.56 101.05 1.07 1.89 16 2 O -0.37 -7.73 10.56 -39.24 -0.41 -8.14 16 3 C 0.47 10.81 5.08 36.00 0.18 10.99 16 4 O -0.45 -12.45 13.48 -27.27 -0.37 -12.82 16 5 C 0.17 3.29 3.34 -68.75 -0.23 3.06 16 6 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 7 C -0.11 -1.77 3.92 -26.61 -0.10 -1.87 16 8 C -0.07 -0.97 2.59 -91.74 -0.24 -1.21 16 9 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 10 C 0.47 6.50 7.25 36.00 0.26 6.76 16 11 O -0.51 -8.43 15.73 -18.76 -0.29 -8.72 16 12 O -0.36 -4.23 10.45 -39.25 -0.41 -4.64 16 13 C 0.03 0.31 10.56 101.05 1.07 1.37 16 14 C -0.13 -1.80 5.30 -26.61 -0.14 -1.94 16 15 C 0.13 2.12 6.35 -3.71 -0.02 2.10 16 16 N -0.64 -13.86 2.97 -168.18 -0.50 -14.36 16 17 C 0.55 15.35 7.22 -12.99 -0.09 15.26 16 18 O -0.54 -17.05 10.29 -20.50 -0.21 -17.26 16 19 C -0.54 -14.72 8.80 -35.63 -0.31 -15.04 16 20 H 0.07 1.80 5.76 -52.49 -0.30 1.49 16 21 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 22 N -0.76 -22.74 11.87 55.55 0.66 -22.08 16 23 Si 0.91 19.78 29.56 -169.99 -5.03 14.75 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.34 8.13 -51.93 -0.42 0.91 16 29 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.08 1.65 8.13 -51.93 -0.42 1.23 16 31 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 35 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.11 1.87 5.34 -51.93 -0.28 1.59 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -37.52 327.76 -5.49 -43.01 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.20 Total: 1.64 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 1.34 Total: 23.68 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.16 Total: -36.44 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -1.70 Total: -51.58 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.52 -5.49 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331091048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.382 kcal (2) G-P(sol) polarization free energy of solvation -37.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds