Wall clock time and date at job start Tue Mar 31 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 117.00075 * 2 1 4 4 O 1.20834 * 119.99850 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00376 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.58176 * 350.09469 * 5 3 2 7 7 C 1.53194 * 109.58954 * 110.37798 * 5 3 2 8 8 C 1.53041 * 109.31540 * 174.42267 * 7 5 3 9 9 H 1.08999 * 109.45564 * 58.64087 * 8 7 5 10 10 C 1.50689 * 109.46105 * 178.61529 * 8 7 5 11 11 O 1.20833 * 120.00277 * 359.97438 * 10 8 7 12 12 O 1.34227 * 120.00202 * 180.27765 * 10 8 7 13 13 C 1.45205 * 117.00267 * 179.72340 * 12 10 8 14 14 C 1.53035 * 109.53677 * 298.63885 * 8 7 5 15 15 C 1.53193 * 109.31703 * 61.36641 * 14 8 7 16 16 N 1.46928 * 109.58906 * 229.67280 * 5 3 2 17 17 C 1.34774 * 120.62934 * 6.57722 * 16 5 3 18 18 O 1.21686 * 120.00137 * 5.27420 * 17 16 5 19 19 C 1.46376 * 120.00088 * 185.27519 * 17 16 5 20 20 H 1.08000 * 119.99890 * 9.56118 * 19 17 16 21 21 C 1.40048 * 120.00130 * 189.56041 * 19 17 16 22 22 N 1.30673 * 119.99651 * 354.11171 * 21 19 17 23 23 Si 1.86802 * 119.99897 * 174.11726 * 21 19 17 24 24 H 1.48501 * 109.47057 * 94.98834 * 23 21 19 25 25 H 1.48503 * 109.46609 * 214.98689 * 23 21 19 26 26 H 1.48500 * 109.47117 * 334.98581 * 23 21 19 27 27 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47080 * 299.99690 * 1 2 3 29 29 H 1.09004 * 109.46956 * 60.00465 * 1 2 3 30 30 H 1.09002 * 109.49377 * 54.47478 * 7 5 3 31 31 H 1.09000 * 109.49752 * 294.37696 * 7 5 3 32 32 H 1.09004 * 109.46936 * 179.97438 * 13 12 10 33 33 H 1.08993 * 109.47196 * 299.99971 * 13 12 10 34 34 H 1.08999 * 109.46663 * 60.00374 * 13 12 10 35 35 H 1.09000 * 109.49776 * 181.31235 * 14 8 7 36 36 H 1.08997 * 109.49891 * 301.41150 * 14 8 7 37 37 H 1.09000 * 109.59040 * 185.58128 * 15 14 8 38 38 H 1.08997 * 109.59210 * 65.14779 * 15 14 8 39 39 H 0.97000 * 119.99436 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9841 0.2837 0.1776 7 6 4.0534 1.8034 -1.3523 8 6 5.5685 2.0129 -1.2981 9 1 6.0570 1.0693 -1.0553 10 6 6.0561 2.5005 -2.6380 11 8 5.2726 2.6633 -3.5434 12 8 7.3616 2.7482 -2.8276 13 6 7.7605 3.2095 -4.1453 14 6 5.9035 3.0511 -0.2249 15 6 5.4375 2.5367 1.1408 16 7 4.0109 2.1955 1.0559 17 6 3.1268 2.7174 1.9290 18 8 1.9655 2.3545 1.9093 19 6 3.5635 3.7209 2.9010 20 1 4.5486 4.1566 2.8219 21 6 2.7040 4.1162 3.9337 22 7 1.4737 3.6769 3.9638 23 14 3.3164 5.2713 5.2679 24 1 2.9596 6.6689 4.9147 25 1 2.6844 4.9112 6.5626 26 1 4.7918 5.1520 5.3871 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 3.5626 2.7519 -1.5704 31 1 3.8137 1.0812 -2.1327 32 1 8.8383 3.3719 -4.1626 33 1 7.4939 2.4588 -4.8892 34 1 7.2489 4.1446 -4.3731 35 1 6.9806 3.2170 -0.2028 36 1 5.3953 3.9878 -0.4536 37 1 5.5834 3.3123 1.8927 38 1 6.0098 1.6496 1.4119 39 1 0.8785 3.9504 4.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331091048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:51 Heat of formation + Delta-G solvation = -208.581487 kcal Electronic energy + Delta-G solvation = -25775.627172 eV Core-core repulsion = 21876.681241 eV Total energy + Delta-G solvation = -3898.945930 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.03658 -41.36175 -39.69457 -37.94742 -37.29536 -37.05061 -34.65011 -33.70351 -32.71518 -29.06596 -28.76538 -28.42252 -26.61233 -24.95838 -23.13113 -22.70920 -21.42478 -20.43138 -19.10930 -18.54802 -18.26610 -17.85259 -17.63691 -17.23908 -17.03226 -16.78969 -16.23430 -15.82408 -15.38274 -15.03308 -14.78750 -14.66038 -14.45300 -14.16606 -14.01307 -13.68517 -13.25433 -13.13772 -13.06146 -12.99640 -12.78801 -12.68149 -12.55842 -12.30636 -12.03670 -11.90363 -11.80592 -11.72685 -11.55921 -11.33032 -11.06801 -10.84918 -9.51516 -9.11470 -8.23476 -6.78365 1.13365 1.39255 1.41162 1.46440 1.57843 1.62054 2.01718 2.24768 2.50700 2.78964 3.44406 3.61734 3.70008 3.81078 3.92755 4.11300 4.13533 4.28358 4.30504 4.36457 4.37787 4.40444 4.49020 4.65336 4.67127 4.74270 4.78152 4.84690 4.97148 5.02522 5.30166 5.37614 5.43299 5.59874 5.72616 6.13694 6.28115 6.70430 6.91039 7.12594 7.39177 8.50802 8.70989 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.005724 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.779644 B = 4890.116985 C = 6611.470161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.372 6.372 3 C 0.460 3.540 4 O -0.508 6.508 5 C 0.166 3.834 6 H 0.118 0.882 7 C -0.096 4.096 8 C -0.065 4.065 9 H 0.154 0.846 10 C 0.474 3.526 11 O -0.541 6.541 12 O -0.353 6.353 13 C 0.027 3.973 14 C -0.118 4.118 15 C 0.122 3.878 16 N -0.640 5.640 17 C 0.532 3.468 18 O -0.590 6.590 19 C -0.563 4.563 20 H 0.098 0.902 21 C 0.028 3.972 22 N -0.824 5.824 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.238 1.238 27 H 0.138 0.862 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.123 0.877 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.724 -5.217 -9.877 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.290 6.290 3 C 0.302 3.698 4 O -0.394 6.394 5 C 0.061 3.939 6 H 0.136 0.864 7 C -0.135 4.135 8 C -0.084 4.084 9 H 0.171 0.829 10 C 0.318 3.682 11 O -0.431 6.431 12 O -0.268 6.268 13 C -0.066 4.066 14 C -0.157 4.157 15 C 0.000 4.000 16 N -0.380 5.380 17 C 0.338 3.662 18 O -0.475 6.475 19 C -0.600 4.600 20 H 0.116 0.884 21 C -0.186 4.186 22 N -0.454 5.454 23 Si 0.813 3.187 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.161 1.161 27 H 0.156 0.844 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.154 0.846 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.481 -5.059 -10.110 17.594 hybrid contribution -0.958 0.856 0.316 1.323 sum 12.524 -4.203 -9.794 16.445 Atomic orbital electron populations 1.23246 0.75976 1.04798 1.00969 1.86340 1.24158 1.33289 1.85210 1.23445 0.92381 0.81318 0.72627 1.90670 1.67772 1.37538 1.43437 1.20463 0.86359 0.96803 0.90295 0.86439 1.21613 0.95133 1.02098 0.94639 1.20990 0.94723 1.03497 0.89210 0.82870 1.23858 0.80685 0.73152 0.90457 1.90670 1.56977 1.49852 1.45626 1.86495 1.25782 1.77091 1.37473 1.23565 1.03017 0.99534 0.80508 1.21958 1.03864 0.96661 0.93193 1.21788 0.79117 1.01967 0.97132 1.48206 1.09330 1.49524 1.30965 1.18738 0.84169 0.82602 0.80716 1.90690 1.20007 1.64593 1.72224 1.21436 1.02997 1.23604 1.11935 0.88420 1.26971 0.93829 0.97000 1.00840 1.70234 1.06554 1.38462 1.30139 0.85073 0.80311 0.77305 0.76032 1.19589 1.20189 1.16095 0.84375 0.95165 0.92410 0.93573 0.88622 0.84634 0.91826 0.92621 0.85925 0.93415 0.88785 0.89093 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 10.56 113.37 1.20 2.77 16 2 O -0.37 -15.57 10.56 -51.35 -0.54 -16.11 16 3 C 0.46 21.94 5.08 71.23 0.36 22.30 16 4 O -0.51 -29.58 13.48 30.08 0.41 -29.18 16 5 C 0.17 6.36 3.34 44.23 0.15 6.51 16 6 H 0.12 3.64 8.14 -2.38 -0.02 3.62 16 7 C -0.10 -3.09 3.92 30.67 0.12 -2.97 16 8 C -0.07 -1.56 2.59 -11.52 -0.03 -1.59 16 9 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 10 C 0.47 11.97 7.25 71.23 0.52 12.49 16 11 O -0.54 -17.44 15.73 21.94 0.35 -17.09 16 12 O -0.35 -7.06 10.45 -51.39 -0.54 -7.60 16 13 C 0.03 0.39 10.56 113.37 1.20 1.59 16 14 C -0.12 -2.94 5.30 30.67 0.16 -2.77 16 15 C 0.12 3.73 6.35 86.36 0.55 4.28 16 16 N -0.64 -27.74 2.97 -804.22 -2.39 -30.13 16 17 C 0.53 30.52 7.22 86.36 0.62 31.14 16 18 O -0.59 -39.18 10.29 20.27 0.21 -38.97 16 19 C -0.56 -31.22 8.80 24.83 0.22 -31.00 16 20 H 0.10 4.72 5.76 -2.91 -0.02 4.70 16 21 C 0.03 1.57 5.50 85.30 0.47 2.04 16 22 N -0.82 -51.36 11.87 21.84 0.26 -51.10 16 23 Si 0.99 40.87 29.56 68.60 2.03 42.90 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 27 H 0.14 3.48 8.14 -2.38 -0.02 3.46 16 28 H 0.03 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.06 1.98 8.13 -2.38 -0.02 1.96 16 30 H 0.05 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 32 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 34 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 35 H 0.12 2.12 8.09 -2.39 -0.02 2.10 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 3.12 5.34 -2.39 -0.01 3.11 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 Total: -1.00 -89.37 327.76 6.38 -83.00 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 1.07 Total: 19.50 kcal Atomic # 6 Polarization: 39.25 SS G_CDS: 5.53 Total: 44.78 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.13 Total: -81.22 kcal Atomic # 8 Polarization: -108.83 SS G_CDS: -0.12 Total: -108.95 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -89.37 6.38 -83.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331091048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.586 kcal (2) G-P(sol) polarization free energy of solvation -89.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds