Wall clock time and date at job start Tue Mar 31 2020 03:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00469 * 2 1 4 4 O 1.20824 * 119.99804 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00337 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.44721 * 299.96381 * 5 3 2 7 7 C 1.53040 * 109.46169 * 59.92963 * 5 3 2 8 8 C 1.53194 * 109.31451 * 181.38700 * 7 5 3 9 9 N 1.46922 * 108.77358 * 305.36465 * 8 7 5 10 10 C 1.34781 * 120.63187 * 233.62942 * 9 8 7 11 11 O 1.21684 * 120.00069 * 174.76544 * 10 9 8 12 12 C 1.46382 * 119.99410 * 354.76266 * 10 9 8 13 13 H 1.07994 * 120.00350 * 5.00891 * 12 10 9 14 14 C 1.40050 * 119.99429 * 185.00834 * 12 10 9 15 15 N 1.30677 * 120.00187 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99873 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46840 * 89.99905 * 16 14 12 18 18 H 1.48493 * 109.47146 * 209.99944 * 16 14 12 19 19 H 1.48500 * 109.47059 * 330.00089 * 16 14 12 20 20 C 1.46995 * 118.75871 * 53.60655 * 9 8 7 21 21 H 1.08997 * 109.62937 * 186.61793 * 20 9 8 22 22 C 1.50708 * 109.57774 * 66.16884 * 20 9 8 23 23 O 1.20825 * 119.99974 * 340.76062 * 22 20 9 24 24 O 1.34224 * 119.99833 * 160.76279 * 22 20 9 25 25 C 1.45193 * 117.00303 * 180.02562 * 24 22 20 26 26 C 1.53039 * 109.46255 * 179.97438 * 5 3 2 27 27 H 1.09002 * 109.46795 * 60.00166 * 1 2 3 28 28 H 1.08999 * 109.47582 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46881 * 300.00562 * 1 2 3 30 30 H 1.09000 * 109.49724 * 301.33819 * 7 5 3 31 31 H 1.09000 * 109.50144 * 61.40285 * 7 5 3 32 32 H 1.08999 * 109.58452 * 65.14981 * 8 7 5 33 33 H 1.09001 * 109.58686 * 185.43419 * 8 7 5 34 34 H 0.97000 * 119.99611 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47432 * 179.97438 * 25 24 22 36 36 H 1.09012 * 109.47040 * 299.99916 * 25 24 22 37 37 H 1.09004 * 109.47481 * 59.99401 * 25 24 22 38 38 H 1.09006 * 109.49811 * 298.56609 * 26 5 3 39 39 H 1.09004 * 109.49709 * 58.62735 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9559 0.7810 0.8896 7 6 4.1129 0.5797 -1.2497 8 6 5.6438 0.6315 -1.2295 9 7 6.0677 2.0306 -1.0833 10 6 6.9334 2.5808 -1.9576 11 8 7.2034 3.7650 -1.8831 12 6 7.5488 1.7537 -2.9969 13 1 7.2491 0.7229 -3.1146 14 6 8.5262 2.2994 -3.8385 15 7 8.8892 3.5465 -3.6957 16 14 9.3121 1.2438 -5.1643 17 1 8.5243 1.3562 -6.4181 18 1 10.7009 1.7090 -5.4089 19 1 9.3357 -0.1729 -4.7198 20 6 5.5296 2.8195 0.0342 21 1 5.8456 3.8579 -0.0651 22 6 6.0343 2.2573 1.3383 23 8 6.4643 1.1291 1.3837 24 8 6.0059 3.0100 2.4493 25 6 6.5085 2.4039 3.6692 26 6 4.0001 2.7424 -0.0011 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.7841 -0.4595 -1.2610 31 1 3.7430 1.0879 -2.1402 32 1 6.0181 0.0466 -0.3893 33 1 6.0355 0.2242 -2.1616 34 1 9.5665 3.9243 -4.2784 35 1 6.4291 3.1178 4.4891 36 1 5.9212 1.5156 3.9022 37 1 7.5528 2.1233 3.5321 38 1 3.6317 3.2304 -0.9035 39 1 3.5905 3.2431 0.8762 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331091049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:54 Heat of formation + Delta-G solvation = -200.974923 kcal Electronic energy + Delta-G solvation = -25635.277388 eV Core-core repulsion = 21736.661303 eV Total energy + Delta-G solvation = -3898.616085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90877 -40.15344 -38.32286 -36.63469 -36.12460 -35.57298 -32.71969 -32.11207 -31.35919 -28.06282 -27.69100 -26.65650 -25.22761 -23.61608 -21.99172 -21.05769 -20.40985 -18.94715 -17.69638 -17.33696 -16.71595 -16.65052 -16.27541 -15.98130 -15.83825 -15.61021 -14.41753 -14.26771 -14.08773 -13.84690 -13.58089 -13.39525 -13.09261 -12.74266 -12.57312 -12.30305 -12.26021 -11.90979 -11.81922 -11.46057 -11.28276 -11.17353 -10.99483 -10.87141 -10.81236 -10.68085 -10.52443 -10.34518 -10.25407 -9.97342 -9.78204 -8.92015 -7.73671 -7.47247 -6.28587 -4.73515 2.20053 2.53443 2.69546 2.94775 3.11234 3.18490 3.21762 4.00589 4.32756 4.46121 4.62779 4.84604 4.89339 4.97429 5.05118 5.14616 5.21620 5.24982 5.30294 5.35096 5.40693 5.60958 5.62412 5.82860 5.93588 5.95404 6.07076 6.08259 6.23811 6.32604 6.44016 6.54288 6.82953 7.37295 7.39830 7.73099 7.91246 8.13792 8.22892 8.93820 9.24506 10.44017 10.64042 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.005306 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.870037 B = 5276.145481 C = 6517.676351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.507 6.507 5 C -0.081 4.081 6 H 0.105 0.895 7 C -0.125 4.125 8 C 0.115 3.885 9 N -0.620 5.620 10 C 0.559 3.441 11 O -0.573 6.573 12 C -0.537 4.537 13 H 0.076 0.924 14 C 0.087 3.913 15 N -0.765 5.765 16 Si 0.909 3.091 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.263 1.263 20 C 0.160 3.840 21 H 0.133 0.867 22 C 0.451 3.549 23 O -0.499 6.499 24 O -0.363 6.363 25 C 0.035 3.965 26 C -0.102 4.102 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.270 0.730 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 -7.100 8.957 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.394 6.394 5 C -0.100 4.100 6 H 0.123 0.877 7 C -0.163 4.163 8 C -0.009 4.009 9 N -0.359 5.359 10 C 0.366 3.634 11 O -0.455 6.455 12 C -0.573 4.573 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.393 5.393 16 Si 0.734 3.266 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.187 1.187 20 C 0.052 3.948 21 H 0.151 0.849 22 C 0.292 3.708 23 O -0.385 6.385 24 O -0.279 6.279 25 C -0.059 4.059 26 C -0.140 4.140 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.046 -6.334 8.954 15.566 hybrid contribution 0.221 -0.693 -0.314 0.792 sum -10.825 -7.026 8.640 15.531 Atomic orbital electron populations 1.23242 0.76756 1.03496 1.02448 1.86530 1.23092 1.33670 1.84123 1.23928 0.92044 0.81156 0.71696 1.90652 1.67197 1.36330 1.45258 1.21166 0.86423 0.99565 1.02862 0.87690 1.22008 0.98449 1.00512 0.95373 1.21678 0.90905 0.84381 1.03895 1.48256 1.49734 1.11507 1.26373 1.18375 0.76890 0.87459 0.80642 1.90609 1.63737 1.16529 1.74624 1.20947 1.22468 0.98039 1.15867 0.90559 1.25745 0.95614 0.94787 0.97187 1.70007 1.23700 1.12672 1.32934 0.86339 0.78586 0.80770 0.80948 1.19629 1.20419 1.18749 1.20304 0.92556 0.99954 0.82021 0.84903 1.25069 0.75169 0.84556 0.85980 1.90573 1.42616 1.19820 1.85493 1.86566 1.76466 1.46658 1.18179 1.23178 0.99625 0.99028 0.84099 1.21773 0.93307 0.93844 1.05107 0.91913 0.88232 0.92091 0.90164 0.90868 0.91091 0.88112 0.91917 0.88551 0.92326 0.92075 0.88750 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.51 10.44 -39.26 -0.41 -4.92 16 3 C 0.47 6.79 7.26 36.00 0.26 7.06 16 4 O -0.51 -8.38 15.73 -18.75 -0.29 -8.68 16 5 C -0.08 -1.20 2.43 -91.73 -0.22 -1.42 16 6 H 0.11 1.52 7.10 -51.93 -0.37 1.15 16 7 C -0.12 -1.88 5.30 -26.61 -0.14 -2.02 16 8 C 0.12 2.12 5.81 -3.71 -0.02 2.10 16 9 N -0.62 -13.71 2.54 -168.13 -0.43 -14.14 16 10 C 0.56 15.37 7.62 -12.98 -0.10 15.27 16 11 O -0.57 -17.82 14.46 5.20 0.08 -17.74 16 12 C -0.54 -14.55 8.86 -35.63 -0.32 -14.87 16 13 H 0.08 1.87 5.69 -52.49 -0.30 1.57 16 14 C 0.09 2.35 5.50 -17.36 -0.10 2.25 16 15 N -0.76 -22.28 11.84 55.55 0.66 -21.62 16 16 Si 0.91 19.57 29.56 -169.99 -5.02 14.55 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 C 0.16 3.09 3.13 -68.71 -0.22 2.88 16 21 H 0.13 2.81 7.00 -51.93 -0.36 2.45 16 22 C 0.45 8.35 6.27 36.01 0.23 8.57 16 23 O -0.50 -9.90 13.71 -18.75 -0.26 -10.15 16 24 O -0.36 -5.87 10.56 -39.24 -0.41 -6.29 16 25 C 0.03 0.43 10.56 101.05 1.07 1.49 16 26 C -0.10 -1.64 4.11 -26.61 -0.11 -1.75 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.32 6.16 -51.93 -0.32 1.00 16 33 H 0.10 1.90 5.38 -51.93 -0.28 1.62 16 34 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 38 H 0.09 1.60 8.13 -51.93 -0.42 1.18 16 39 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -34.85 328.43 -4.73 -39.58 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.98 Total: 3.51 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 1.40 Total: 20.95 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.23 Total: -35.76 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -1.30 Total: -47.78 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.85 -4.73 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331091049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.397 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds